Gvermi2198.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2198.t1
Unique NameGvermi2198.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_295contigScGOVlb_295:2005..2538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0QYM4
Max annot lvl2836|Bacillariophyta
Evalue1.58e-07
EggNOG OGs2EVM1@1|root,2SXJU@2759|Eukaryota,2XHRT@2836|Bacillariophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2198Gvermi2198Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_295 2005..2538 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2198.t1.stop1Gvermi2198.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_295 2005..2007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2198.t1.CDS1Gvermi2198.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_295 2005..2538 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2198.t1.exon1Gvermi2198.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_295 2005..2538 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2198.t1.start1Gvermi2198.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_295 2536..2538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2198.t1Gvermi2198.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_295 2005..2538 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2198.t1 ID=Gvermi2198.t1|Name=Gvermi2198.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=178bp
MARKKMDWGQSASKSILRADILRGFVTDASDKKAVFNGHVEHKKWNFGNW
KKGCTRLLNALECDRGRMQRDAVSYGHDLAIVQSQRTEAADAAWHRSPAY
QLLKKDVDDGLHEQLAPMDLWNTRPEYLVFELRCFRKHIYQEVDSRPKRA
IRFEKKKQNWQWPELHADHPRLQHSDT*
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spliced messenger RNA

>Gvermi2198.t1 ID=Gvermi2198.t1|Name=Gvermi2198.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=534bp|location=Sequence derived from alignment at ScGOVlb_295:2005..2538- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGGAAGAAGATGGACTGGGGGCAAAGTGCCTCAAAGTCTATTCT
GCGAGCCGATATTCTCCGTGGATTTGTTACCGACGCAAGCGACAAAAAAG
CAGTTTTCAACGGGCATGTTGAACACAAGAAATGGAACTTTGGCAACTGG
AAAAAAGGCTGCACAAGGCTATTAAATGCATTGGAATGCGACCGAGGTAG
AATGCAGAGAGATGCTGTCTCTTATGGCCATGATCTTGCGATCGTTCAGT
CGCAAAGAACTGAAGCAGCGGACGCCGCTTGGCATCGATCTCCCGCCTAT
CAATTGCTCAAGAAAGATGTTGATGATGGCCTGCATGAACAGCTAGCTCC
TATGGATCTATGGAATACACGCCCAGAGTACTTGGTATTTGAGTTGCGGT
GCTTCCGGAAGCACATATACCAAGAGGTTGACAGTCGACCCAAACGGGCG
ATCCGTTTTGAAAAGAAGAAGCAGAATTGGCAATGGCCAGAGCTCCACGC
AGACCACCCAAGACTCCAGCACAGTGACACGTAG
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protein sequence of Gvermi2198.t1

>Gvermi2198.t1 ID=Gvermi2198.t1|Name=Gvermi2198.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=178bp
MARKKMDWGQSASKSILRADILRGFVTDASDKKAVFNGHVEHKKWNFGNW
KKGCTRLLNALECDRGRMQRDAVSYGHDLAIVQSQRTEAADAAWHRSPAY
QLLKKDVDDGLHEQLAPMDLWNTRPEYLVFELRCFRKHIYQEVDSRPKRA
IRFEKKKQNWQWPELHADHPRLQHSDT*
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mRNA from alignment at ScGOVlb_295:2005..2538-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2198.t1 ID=Gvermi2198.t1|Name=Gvermi2198.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=534bp|location=Sequence derived from alignment at ScGOVlb_295:2005..2538- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGGAAGAAGATGGACTGGGGGCAAAGTGCCTCAAAGTCTATTCT
GCGAGCCGATATTCTCCGTGGATTTGTTACCGACGCAAGCGACAAAAAAG
CAGTTTTCAACGGGCATGTTGAACACAAGAAATGGAACTTTGGCAACTGG
AAAAAAGGCTGCACAAGGCTATTAAATGCATTGGAATGCGACCGAGGTAG
AATGCAGAGAGATGCTGTCTCTTATGGCCATGATCTTGCGATCGTTCAGT
CGCAAAGAACTGAAGCAGCGGACGCCGCTTGGCATCGATCTCCCGCCTAT
CAATTGCTCAAGAAAGATGTTGATGATGGCCTGCATGAACAGCTAGCTCC
TATGGATCTATGGAATACACGCCCAGAGTACTTGGTATTTGAGTTGCGGT
GCTTCCGGAAGCACATATACCAAGAGGTTGACAGTCGACCCAAACGGGCG
ATCCGTTTTGAAAAGAAGAAGCAGAATTGGCAATGGCCAGAGCTCCACGC
AGACCACCCAAGACTCCAGCACAGTGACACGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_295:2005..2538-

>Gvermi2198.t1 ID=Gvermi2198.t1|Name=Gvermi2198.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=534bp|location=Sequence derived from alignment at ScGOVlb_295:2005..2538- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGGAAGAAGATGGACTGGGGGCAAAGTGCCTCAAAGTCTATTCT
GCGAGCCGATATTCTCCGTGGATTTGTTACCGACGCAAGCGACAAAAAAG
CAGTTTTCAACGGGCATGTTGAACACAAGAAATGGAACTTTGGCAACTGG
AAAAAAGGCTGCACAAGGCTATTAAATGCATTGGAATGCGACCGAGGTAG
AATGCAGAGAGATGCTGTCTCTTATGGCCATGATCTTGCGATCGTTCAGT
CGCAAAGAACTGAAGCAGCGGACGCCGCTTGGCATCGATCTCCCGCCTAT
CAATTGCTCAAGAAAGATGTTGATGATGGCCTGCATGAACAGCTAGCTCC
TATGGATCTATGGAATACACGCCCAGAGTACTTGGTATTTGAGTTGCGGT
GCTTCCGGAAGCACATATACCAAGAGGTTGACAGTCGACCCAAACGGGCG
ATCCGTTTTGAAAAGAAGAAGCAGAATTGGCAATGGCCAGAGCTCCACGC
AGACCACCCAAGACTCCAGCACAGTGACACGTAG
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