Gvermi2190.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi2190.t1
Unique Name	Gvermi2190.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	476

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_52	contig	ScGOVlb_52:161818..163245 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.E7BWD8
Preferred name	atpB
PFAMs	ATP-synt_ab,ATP-synt_ab_N
Max annot lvl	2836\|Bacillariophyta
KEGG ko	ko:K02112
KEGG TC	3.A.2.1
KEGG Pathway	ko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG Module	M00157
Evalue	6.54e-308
EggNOG OGs	COG0055@1\|root,KOG1350@2759\|Eukaryota,2XE2T@2836\|Bacillariophyta
EC	3.6.3.14
Description	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
COG category	C
BRITE	ko00000,ko00001,ko00002,ko00194,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi2190	Gvermi2190	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_52 161818..163245 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2190.t1.start1	Gvermi2190.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_52 161818..161820 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2190.t1.CDS1	Gvermi2190.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_52 161818..163245 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2190.t1.exon1	Gvermi2190.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_52 161818..163245 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2190.t1.stop1	Gvermi2190.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_52 163243..163245 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2190.t1	Gvermi2190.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_52 161818..163245 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_52:161818..163245+
coding sequence from alignment at ScGOVlb_52:161818..163245+

mRNA sequence

>Gvermi2190.t1 ID=Gvermi2190.t1|Name=Gvermi2190.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=476bp
MVKTNLNKGYVTQIIGPVLDIQFPQDKLPPIYSAVKIALEDGTETIVEVQ
QLLGDNRVRAVSMRSTDGLKRGVEAIDLGTPIIVPVGTPTLGRIFNVIGE
PVDEQGEVIFDETLPIHRDAPAFTELETKPSIFETGIKVVDLLAPYRRGG
KIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYEEM
KESGVINEKNFPDSKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQ
DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITST
TQGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRNLAAKGIYPAVD
PLDSTSTMLQVGIVTAEHYEIAETVKETLQRYKELQDIIAILGIDELSEE
DRLTVARARKVERFLSQPFFVAEIFTGSPGEYVSLEDTIKGFSMTLNGEL
DDLPEQAFYLVGNIDQVIAKAETLK*

spliced messenger RNA

>Gvermi2190.t1 ID=Gvermi2190.t1|Name=Gvermi2190.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at ScGOVlb_52:161818..163245+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAAAAACTAATTTAAATAAAGGTTATGTTACTCAAATTATTGGTCC
TGTATTAGATATTCAATTCCCTCAGGATAAATTACCTCCTATTTATAGTG
CAGTTAAAATTGCATTAGAAGATGGTACAGAAACAATCGTTGAAGTACAA
CAACTATTAGGTGATAATCGCGTCCGAGCAGTATCAATGCGTTCAACTGA
TGGTTTAAAACGTGGGGTTGAAGCTATTGATTTAGGTACTCCAATTATTG
TACCTGTTGGTACTCCAACCTTAGGACGAATTTTTAATGTAATTGGTGAG
CCTGTTGATGAGCAAGGTGAAGTTATATTTGATGAAACCTTACCAATCCA
TAGAGATGCGCCAGCATTTACTGAATTAGAAACAAAACCATCAATTTTTG
AAACTGGTATTAAAGTTGTTGATTTATTAGCGCCTTACCGTCGTGGTGGT
AAAATTGGATTATTCGGTGGGGCTGGTGTAGGTAAAACTGTATTAATCAT
GGAATTAATCAATAATATTGCAAAAGCTCACGGTGGTGTGTCTGTTTTTG
GTGGTGTAGGTGAACGTACACGTGAAGGAAACGATTTATACGAAGAAATG
AAAGAATCAGGCGTAATTAATGAAAAGAACTTTCCTGATTCAAAAGTAGC
TTTAGTTTATGGTCAAATGAATGAACCACCAGGGGCACGGATGCGTGTTG
GTTTAACAGCATTAACAATGGCAGAATACTTCCGTGATGTAAACAAGCAA
GATGTATTATTATTCATTGATAATATTTTCCGTTTCACACAAGCTGGTTC
AGAAGTATCTGCATTATTAGGTCGTATGCCATCGGCTGTAGGGTACCAAC
CAACTTTAGCTACAGAAATGGGTGCATTGCAAGAGCGTATTACATCAACA
ACGCAAGGTTCAATCACATCAATTCAAGCTGTATATGTACCTGCTGATGA
TTTAACCGATCCTGCTCCGGCAACAACATTTGCCCACTTAGATGCAACAA
CAGTATTATCACGTAATTTAGCAGCAAAAGGTATTTACCCTGCTGTAGAT
CCATTAGATTCAACTTCAACAATGTTACAAGTAGGTATTGTTACTGCAGA
ACATTATGAAATTGCTGAAACGGTAAAAGAAACATTACAACGATATAAAG
AATTGCAAGATATTATTGCAATTTTAGGGATTGATGAATTATCAGAAGAA
GATCGTTTAACTGTTGCCCGAGCACGTAAAGTAGAACGTTTCTTATCACA
ACCATTCTTCGTTGCTGAAATTTTTACAGGTTCACCAGGTGAATATGTAA
GTTTAGAAGATACAATTAAAGGTTTTTCAATGACATTAAATGGGGAATTA
GATGATTTACCTGAGCAGGCTTTTTATCTTGTAGGGAACATTGATCAAGT
AATTGCGAAAGCAGAAACTCTAAAATAA

protein sequence of Gvermi2190.t1

>Gvermi2190.t1 ID=Gvermi2190.t1|Name=Gvermi2190.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=476bp
MVKTNLNKGYVTQIIGPVLDIQFPQDKLPPIYSAVKIALEDGTETIVEVQ
QLLGDNRVRAVSMRSTDGLKRGVEAIDLGTPIIVPVGTPTLGRIFNVIGE
PVDEQGEVIFDETLPIHRDAPAFTELETKPSIFETGIKVVDLLAPYRRGG
KIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYEEM
KESGVINEKNFPDSKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQ
DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITST
TQGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRNLAAKGIYPAVD
PLDSTSTMLQVGIVTAEHYEIAETVKETLQRYKELQDIIAILGIDELSEE
DRLTVARARKVERFLSQPFFVAEIFTGSPGEYVSLEDTIKGFSMTLNGEL
DDLPEQAFYLVGNIDQVIAKAETLK*

mRNA from alignment at ScGOVlb_52:161818..163245+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi2190.t1 ID=Gvermi2190.t1|Name=Gvermi2190.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at ScGOVlb_52:161818..163245+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAAAAACTAATTTAAATAAAGGTTATGTTACTCAAATTATTGGTCC
TGTATTAGATATTCAATTCCCTCAGGATAAATTACCTCCTATTTATAGTG
CAGTTAAAATTGCATTAGAAGATGGTACAGAAACAATCGTTGAAGTACAA
CAACTATTAGGTGATAATCGCGTCCGAGCAGTATCAATGCGTTCAACTGA
TGGTTTAAAACGTGGGGTTGAAGCTATTGATTTAGGTACTCCAATTATTG
TACCTGTTGGTACTCCAACCTTAGGACGAATTTTTAATGTAATTGGTGAG
CCTGTTGATGAGCAAGGTGAAGTTATATTTGATGAAACCTTACCAATCCA
TAGAGATGCGCCAGCATTTACTGAATTAGAAACAAAACCATCAATTTTTG
AAACTGGTATTAAAGTTGTTGATTTATTAGCGCCTTACCGTCGTGGTGGT
AAAATTGGATTATTCGGTGGGGCTGGTGTAGGTAAAACTGTATTAATCAT
GGAATTAATCAATAATATTGCAAAAGCTCACGGTGGTGTGTCTGTTTTTG
GTGGTGTAGGTGAACGTACACGTGAAGGAAACGATTTATACGAAGAAATG
AAAGAATCAGGCGTAATTAATGAAAAGAACTTTCCTGATTCAAAAGTAGC
TTTAGTTTATGGTCAAATGAATGAACCACCAGGGGCACGGATGCGTGTTG
GTTTAACAGCATTAACAATGGCAGAATACTTCCGTGATGTAAACAAGCAA
GATGTATTATTATTCATTGATAATATTTTCCGTTTCACACAAGCTGGTTC
AGAAGTATCTGCATTATTAGGTCGTATGCCATCGGCTGTAGGGTACCAAC
CAACTTTAGCTACAGAAATGGGTGCATTGCAAGAGCGTATTACATCAACA
ACGCAAGGTTCAATCACATCAATTCAAGCTGTATATGTACCTGCTGATGA
TTTAACCGATCCTGCTCCGGCAACAACATTTGCCCACTTAGATGCAACAA
CAGTATTATCACGTAATTTAGCAGCAAAAGGTATTTACCCTGCTGTAGAT
CCATTAGATTCAACTTCAACAATGTTACAAGTAGGTATTGTTACTGCAGA
ACATTATGAAATTGCTGAAACGGTAAAAGAAACATTACAACGATATAAAG
AATTGCAAGATATTATTGCAATTTTAGGGATTGATGAATTATCAGAAGAA
GATCGTTTAACTGTTGCCCGAGCACGTAAAGTAGAACGTTTCTTATCACA
ACCATTCTTCGTTGCTGAAATTTTTACAGGTTCACCAGGTGAATATGTAA
GTTTAGAAGATACAATTAAAGGTTTTTCAATGACATTAAATGGGGAATTA
GATGATTTACCTGAGCAGGCTTTTTATCTTGTAGGGAACATTGATCAAGT
AATTGCGAAAGCAGAAACTCTAAAATAA

Coding sequence (CDS) from alignment at ScGOVlb_52:161818..163245+

>Gvermi2190.t1 ID=Gvermi2190.t1|Name=Gvermi2190.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1428bp|location=Sequence derived from alignment at ScGOVlb_52:161818..163245+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAAAAACTAATTTAAATAAAGGTTATGTTACTCAAATTATTGGTCC
TGTATTAGATATTCAATTCCCTCAGGATAAATTACCTCCTATTTATAGTG
CAGTTAAAATTGCATTAGAAGATGGTACAGAAACAATCGTTGAAGTACAA
CAACTATTAGGTGATAATCGCGTCCGAGCAGTATCAATGCGTTCAACTGA
TGGTTTAAAACGTGGGGTTGAAGCTATTGATTTAGGTACTCCAATTATTG
TACCTGTTGGTACTCCAACCTTAGGACGAATTTTTAATGTAATTGGTGAG
CCTGTTGATGAGCAAGGTGAAGTTATATTTGATGAAACCTTACCAATCCA
TAGAGATGCGCCAGCATTTACTGAATTAGAAACAAAACCATCAATTTTTG
AAACTGGTATTAAAGTTGTTGATTTATTAGCGCCTTACCGTCGTGGTGGT
AAAATTGGATTATTCGGTGGGGCTGGTGTAGGTAAAACTGTATTAATCAT
GGAATTAATCAATAATATTGCAAAAGCTCACGGTGGTGTGTCTGTTTTTG
GTGGTGTAGGTGAACGTACACGTGAAGGAAACGATTTATACGAAGAAATG
AAAGAATCAGGCGTAATTAATGAAAAGAACTTTCCTGATTCAAAAGTAGC
TTTAGTTTATGGTCAAATGAATGAACCACCAGGGGCACGGATGCGTGTTG
GTTTAACAGCATTAACAATGGCAGAATACTTCCGTGATGTAAACAAGCAA
GATGTATTATTATTCATTGATAATATTTTCCGTTTCACACAAGCTGGTTC
AGAAGTATCTGCATTATTAGGTCGTATGCCATCGGCTGTAGGGTACCAAC
CAACTTTAGCTACAGAAATGGGTGCATTGCAAGAGCGTATTACATCAACA
ACGCAAGGTTCAATCACATCAATTCAAGCTGTATATGTACCTGCTGATGA
TTTAACCGATCCTGCTCCGGCAACAACATTTGCCCACTTAGATGCAACAA
CAGTATTATCACGTAATTTAGCAGCAAAAGGTATTTACCCTGCTGTAGAT
CCATTAGATTCAACTTCAACAATGTTACAAGTAGGTATTGTTACTGCAGA
ACATTATGAAATTGCTGAAACGGTAAAAGAAACATTACAACGATATAAAG
AATTGCAAGATATTATTGCAATTTTAGGGATTGATGAATTATCAGAAGAA
GATCGTTTAACTGTTGCCCGAGCACGTAAAGTAGAACGTTTCTTATCACA
ACCATTCTTCGTTGCTGAAATTTTTACAGGTTCACCAGGTGAATATGTAA
GTTTAGAAGATACAATTAAAGGTTTTTCAATGACATTAAATGGGGAATTA
GATGATTTACCTGAGCAGGCTTTTTATCTTGTAGGGAACATTGATCAAGT
AATTGCGAAAGCAGAAACTCTAAAATAA