Gvermi2177.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2177.t1
Unique NameGvermi2177.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_52contigScGOVlb_52:81006..81353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.AAC35603
Preferred namepsbW
PFAMsPsb28
Max annot lvl2759|Eukaryota
KEGG koko:K08903
KEGG Pathwayko00195,ko01100,map00195,map01100
Evalue6.09e-57
EggNOG OGs2AR4E@1|root,2RMFI@2759|Eukaryota
Descriptionphotosynthesis
COG categoryS
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2177Gvermi2177Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_52 81006..81353 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2177.t1.stop1Gvermi2177.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_52 81006..81008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2177.t1.CDS1Gvermi2177.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_52 81006..81353 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2177.t1.exon1Gvermi2177.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_52 81006..81353 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2177.t1.start1Gvermi2177.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_52 81351..81353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2177.t1Gvermi2177.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_52 81006..81353 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2177.t1 ID=Gvermi2177.t1|Name=Gvermi2177.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=116bp
MEAKIQFIKGIDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDRKTAKEG
EITGMYLIDEEGTLETRDVNARFVNGKPQAIESIYVMKNPEAWDRFIRFM
ERYVETNGLVFTKAN*
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spliced messenger RNA

>Gvermi2177.t1 ID=Gvermi2177.t1|Name=Gvermi2177.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=348bp|location=Sequence derived from alignment at ScGOVlb_52:81006..81353- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCCAAAATTCAATTTATAAAAGGTATAGATGAAAAGGTATTACC
AGATGTTCGTTTAACTCGTTCAAGAGATGGAAGTACTGGGACGGCTACAT
TTCGTTTTAAAAATCCAAATATTTTAGATAGAAAGACAGCAAAAGAAGGT
GAAATTACAGGTATGTATCTAATTGATGAAGAAGGAACATTAGAAACTCG
TGATGTAAATGCAAGATTTGTCAATGGAAAACCTCAGGCAATTGAATCAA
TTTATGTTATGAAGAATCCAGAAGCTTGGGATAGGTTTATACGGTTTATG
GAGAGATATGTTGAAACAAATGGTTTAGTTTTTACGAAAGCGAATTAA
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protein sequence of Gvermi2177.t1

>Gvermi2177.t1 ID=Gvermi2177.t1|Name=Gvermi2177.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=116bp
MEAKIQFIKGIDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDRKTAKEG
EITGMYLIDEEGTLETRDVNARFVNGKPQAIESIYVMKNPEAWDRFIRFM
ERYVETNGLVFTKAN*
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mRNA from alignment at ScGOVlb_52:81006..81353-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2177.t1 ID=Gvermi2177.t1|Name=Gvermi2177.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=348bp|location=Sequence derived from alignment at ScGOVlb_52:81006..81353- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGCCAAAATTCAATTTATAAAAGGTATAGATGAAAAGGTATTACC
AGATGTTCGTTTAACTCGTTCAAGAGATGGAAGTACTGGGACGGCTACAT
TTCGTTTTAAAAATCCAAATATTTTAGATAGAAAGACAGCAAAAGAAGGT
GAAATTACAGGTATGTATCTAATTGATGAAGAAGGAACATTAGAAACTCG
TGATGTAAATGCAAGATTTGTCAATGGAAAACCTCAGGCAATTGAATCAA
TTTATGTTATGAAGAATCCAGAAGCTTGGGATAGGTTTATACGGTTTATG
GAGAGATATGTTGAAACAAATGGTTTAGTTTTTACGAAAGCGAATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_52:81006..81353-

>Gvermi2177.t1 ID=Gvermi2177.t1|Name=Gvermi2177.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=348bp|location=Sequence derived from alignment at ScGOVlb_52:81006..81353- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGCCAAAATTCAATTTATAAAAGGTATAGATGAAAAGGTATTACC
AGATGTTCGTTTAACTCGTTCAAGAGATGGAAGTACTGGGACGGCTACAT
TTCGTTTTAAAAATCCAAATATTTTAGATAGAAAGACAGCAAAAGAAGGT
GAAATTACAGGTATGTATCTAATTGATGAAGAAGGAACATTAGAAACTCG
TGATGTAAATGCAAGATTTGTCAATGGAAAACCTCAGGCAATTGAATCAA
TTTATGTTATGAAGAATCCAGAAGCTTGGGATAGGTTTATACGGTTTATG
GAGAGATATGTTGAAACAAATGGTTTAGTTTTTACGAAAGCGAATTAA
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