Gvermi2174.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi2174.t1
Unique Name	Gvermi2174.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	317

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_52	contig	ScGOVlb_52:60490..61440 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.E7BWN9
Preferred name	rpoA
PFAMs	RNA_pol_A_CTD,RNA_pol_A_bac,RNA_pol_L
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC02795
KEGG ko	ko:K03040
KEGG Reaction	R00435,R00441,R00442,R00443
KEGG Pathway	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG Module	M00183
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	1.89e-138
EggNOG OGs	COG0202@1\|root,2RZXA@2759\|Eukaryota
EC	2.7.7.6
Description	DNA-directed 5'-3' RNA polymerase activity
COG category	K
BRITE	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi2174	Gvermi2174	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_52 60490..61440 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2174.t1.start1	Gvermi2174.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_52 60490..60492 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2174.t1.CDS1	Gvermi2174.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_52 60490..61440 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2174.t1.exon1	Gvermi2174.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_52 60490..61440 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2174.t1.stop1	Gvermi2174.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_52 61438..61440 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2174.t1	Gvermi2174.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_52 60490..61440 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_52:60490..61440+
coding sequence from alignment at ScGOVlb_52:60490..61440+

mRNA sequence

>Gvermi2174.t1 ID=Gvermi2174.t1|Name=Gvermi2174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=317bp
MNNISIKCLKSEQIQSGACHGQFVINSLRIGQGITIGNQLRRVLLGDLGG
IAISAVRIAGITHEFSTIPGVREDILEILLNLKGIVFKSKTKDIQFGRLK
IQGPSVITADLIQLPSNLEIVNPNHYISTLSTSNILEIEFKFEYGRGYKL
ATQSFSDEDENYLQLDAIFMPVQKVDFKIENIYDNANNISERLFLDIWTN
GSILPSDALESAAQIIIDLFGLLLNNKNTNEINQLDSKIQSISIEPYTNI
AIEELQLSVRAYNCLKKAQINTVGDLLKYSPEKLQELKNFGRKSADEVFS
TLKKKLGIIQEDLVDR*

spliced messenger RNA

>Gvermi2174.t1 ID=Gvermi2174.t1|Name=Gvermi2174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=951bp|location=Sequence derived from alignment at ScGOVlb_52:60490..61440+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAACATTTCTATTAAGTGTCTTAAATCAGAACAGATCCAATCAGG
TGCTTGTCATGGTCAATTTGTAATTAATTCTTTACGTATAGGACAAGGAA
TAACAATTGGAAATCAGTTAAGACGAGTTCTTTTAGGTGATTTGGGTGGT
ATAGCTATTTCGGCCGTTCGGATTGCAGGAATAACTCATGAGTTTTCAAC
AATTCCTGGAGTTCGAGAAGATATTTTAGAAATTTTGTTAAATCTAAAAG
GTATTGTTTTTAAAAGTAAAACAAAAGATATTCAATTTGGTCGATTAAAA
ATTCAAGGGCCAAGTGTTATCACAGCGGATTTAATTCAACTTCCATCAAA
TTTAGAAATTGTAAATCCAAATCATTATATTTCAACACTATCAACATCCA
ATATTCTTGAAATTGAATTTAAATTTGAATATGGAAGGGGATATAAATTA
GCTACTCAATCTTTTTCAGATGAAGATGAAAATTATCTCCAATTGGATGC
AATTTTTATGCCTGTTCAAAAGGTAGATTTTAAAATAGAAAATATTTATG
ATAATGCTAATAATATTAGTGAAAGGTTATTCTTAGATATTTGGACAAAT
GGTAGTATATTACCAAGTGATGCTCTTGAATCAGCAGCTCAAATTATTAT
TGACTTATTTGGATTATTGCTGAACAATAAAAATACGAATGAAATTAATC
AATTAGATTCAAAAATTCAATCAATTAGTATTGAACCATATACTAACATT
GCAATTGAAGAATTGCAATTATCTGTTCGAGCCTATAATTGTTTGAAAAA
AGCTCAAATAAATACCGTCGGTGATTTATTAAAATATTCTCCAGAAAAAC
TCCAAGAACTTAAAAATTTTGGGCGTAAATCTGCGGATGAAGTTTTCTCT
ACACTAAAAAAGAAATTAGGTATAATCCAGGAAGACCTGGTCGATCGTTA
A

protein sequence of Gvermi2174.t1

>Gvermi2174.t1 ID=Gvermi2174.t1|Name=Gvermi2174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=317bp
MNNISIKCLKSEQIQSGACHGQFVINSLRIGQGITIGNQLRRVLLGDLGG
IAISAVRIAGITHEFSTIPGVREDILEILLNLKGIVFKSKTKDIQFGRLK
IQGPSVITADLIQLPSNLEIVNPNHYISTLSTSNILEIEFKFEYGRGYKL
ATQSFSDEDENYLQLDAIFMPVQKVDFKIENIYDNANNISERLFLDIWTN
GSILPSDALESAAQIIIDLFGLLLNNKNTNEINQLDSKIQSISIEPYTNI
AIEELQLSVRAYNCLKKAQINTVGDLLKYSPEKLQELKNFGRKSADEVFS
TLKKKLGIIQEDLVDR*

mRNA from alignment at ScGOVlb_52:60490..61440+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi2174.t1 ID=Gvermi2174.t1|Name=Gvermi2174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=951bp|location=Sequence derived from alignment at ScGOVlb_52:60490..61440+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATAACATTTCTATTAAGTGTCTTAAATCAGAACAGATCCAATCAGG
TGCTTGTCATGGTCAATTTGTAATTAATTCTTTACGTATAGGACAAGGAA
TAACAATTGGAAATCAGTTAAGACGAGTTCTTTTAGGTGATTTGGGTGGT
ATAGCTATTTCGGCCGTTCGGATTGCAGGAATAACTCATGAGTTTTCAAC
AATTCCTGGAGTTCGAGAAGATATTTTAGAAATTTTGTTAAATCTAAAAG
GTATTGTTTTTAAAAGTAAAACAAAAGATATTCAATTTGGTCGATTAAAA
ATTCAAGGGCCAAGTGTTATCACAGCGGATTTAATTCAACTTCCATCAAA
TTTAGAAATTGTAAATCCAAATCATTATATTTCAACACTATCAACATCCA
ATATTCTTGAAATTGAATTTAAATTTGAATATGGAAGGGGATATAAATTA
GCTACTCAATCTTTTTCAGATGAAGATGAAAATTATCTCCAATTGGATGC
AATTTTTATGCCTGTTCAAAAGGTAGATTTTAAAATAGAAAATATTTATG
ATAATGCTAATAATATTAGTGAAAGGTTATTCTTAGATATTTGGACAAAT
GGTAGTATATTACCAAGTGATGCTCTTGAATCAGCAGCTCAAATTATTAT
TGACTTATTTGGATTATTGCTGAACAATAAAAATACGAATGAAATTAATC
AATTAGATTCAAAAATTCAATCAATTAGTATTGAACCATATACTAACATT
GCAATTGAAGAATTGCAATTATCTGTTCGAGCCTATAATTGTTTGAAAAA
AGCTCAAATAAATACCGTCGGTGATTTATTAAAATATTCTCCAGAAAAAC
TCCAAGAACTTAAAAATTTTGGGCGTAAATCTGCGGATGAAGTTTTCTCT
ACACTAAAAAAGAAATTAGGTATAATCCAGGAAGACCTGGTCGATCGTTA
A

Coding sequence (CDS) from alignment at ScGOVlb_52:60490..61440+

>Gvermi2174.t1 ID=Gvermi2174.t1|Name=Gvermi2174.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=951bp|location=Sequence derived from alignment at ScGOVlb_52:60490..61440+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATAACATTTCTATTAAGTGTCTTAAATCAGAACAGATCCAATCAGG
TGCTTGTCATGGTCAATTTGTAATTAATTCTTTACGTATAGGACAAGGAA
TAACAATTGGAAATCAGTTAAGACGAGTTCTTTTAGGTGATTTGGGTGGT
ATAGCTATTTCGGCCGTTCGGATTGCAGGAATAACTCATGAGTTTTCAAC
AATTCCTGGAGTTCGAGAAGATATTTTAGAAATTTTGTTAAATCTAAAAG
GTATTGTTTTTAAAAGTAAAACAAAAGATATTCAATTTGGTCGATTAAAA
ATTCAAGGGCCAAGTGTTATCACAGCGGATTTAATTCAACTTCCATCAAA
TTTAGAAATTGTAAATCCAAATCATTATATTTCAACACTATCAACATCCA
ATATTCTTGAAATTGAATTTAAATTTGAATATGGAAGGGGATATAAATTA
GCTACTCAATCTTTTTCAGATGAAGATGAAAATTATCTCCAATTGGATGC
AATTTTTATGCCTGTTCAAAAGGTAGATTTTAAAATAGAAAATATTTATG
ATAATGCTAATAATATTAGTGAAAGGTTATTCTTAGATATTTGGACAAAT
GGTAGTATATTACCAAGTGATGCTCTTGAATCAGCAGCTCAAATTATTAT
TGACTTATTTGGATTATTGCTGAACAATAAAAATACGAATGAAATTAATC
AATTAGATTCAAAAATTCAATCAATTAGTATTGAACCATATACTAACATT
GCAATTGAAGAATTGCAATTATCTGTTCGAGCCTATAATTGTTTGAAAAA
AGCTCAAATAAATACCGTCGGTGATTTATTAAAATATTCTCCAGAAAAAC
TCCAAGAACTTAAAAATTTTGGGCGTAAATCTGCGGATGAAGTTTTCTCT
ACACTAAAAAAGAAATTAGGTATAATCCAGGAAGACCTGGTCGATCGTTA
A