Gvermi2172.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2172.t1
Unique NameGvermi2172.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length460
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_52contigScGOVlb_52:46664..48043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.E7BWL6
Preferred namednaK
PFAMsHSP70
Max annot lvl2759|Eukaryota
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
GOsGO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006605,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008144,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0010035,GO:0010038,GO:0015031,GO:0015833,GO:0017076,GO:0030554,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042221,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045184,GO:0046686,GO:0046907,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072596,GO:0072598,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue1.38e-210
EggNOG OGsCOG0443@1|root,KOG0102@2759|Eukaryota,2XAKJ@2836|Bacillariophyta
Descriptionheat shock
COG categoryO
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2172Gvermi2172Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_52 46664..48505 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2172.t1.stop1Gvermi2172.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_52 46664..46666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2172.t1.CDS1Gvermi2172.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_52 46664..48043 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2172.t1.exon1Gvermi2172.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_52 46664..48043 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2172.t1.start1Gvermi2172.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_52 48041..48043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2172.t1Gvermi2172.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_52 46664..48043 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2172.t1 ID=Gvermi2172.t1|Name=Gvermi2172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=460bp
MDAGKIAGIEVLRIINEPTAASLAYGLDKKQNETILVFDLGGGTFDVSIL
EVGDGIFEVLSTAGDTTLGGDDFDNLLVKWLMNDFKEKEGIDLSSDIQAL
QRLTEAAEKAKIELSTVEKTTIHLPFITADKTGPKHIEKELTRDIFEKLC
QELINRCRIPVEKSLNDARLDKSDINEIVLVGGSTRIPAVQKLVESLTGK
KPNQSVNPDEVVAIGAAIQAGILAGEIKDILLLDVTPLSLGVETLGGVMT
KIIARNTTIPVKKSETFSTAVENQTNVEIHILQGERELVSGNKSLGNFRL
DGIPPADRGVPQIEVTFDIDVDGILSVKAREKETGVEQSVTIQGASNLNE
AEVEGMLEEAEKFASADKEKRQTIDLKNQAEALCFEAEKELSLLEDTGSE
ETKQKVTKLIETIRQEIQVDNFENLKLQVEELKTEMKNMVEAKMNSESNS
DPMSNLNDL*
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spliced messenger RNA

>Gvermi2172.t1 ID=Gvermi2172.t1|Name=Gvermi2172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at ScGOVlb_52:46664..48043- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCTGGAAAAATTGCCGGTATTGAAGTGTTACGTATTATTAATGA
ACCAACAGCTGCTTCATTAGCTTATGGTTTAGATAAAAAACAAAATGAAA
CTATATTAGTTTTTGATTTAGGTGGGGGAACATTTGATGTTTCAATTTTA
GAAGTTGGTGATGGTATTTTTGAGGTTTTATCAACAGCTGGAGATACAAC
ATTAGGTGGTGATGACTTTGATAATCTTCTTGTTAAGTGGTTAATGAATG
ATTTCAAAGAAAAAGAAGGAATTGATTTAAGTAGTGATATTCAAGCTTTA
CAACGTCTAACAGAAGCTGCTGAAAAAGCAAAAATTGAATTATCAACTGT
TGAAAAAACGACTATTCATTTACCTTTTATTACGGCAGATAAGACAGGTC
CAAAACATATTGAAAAAGAATTAACTCGAGATATTTTTGAGAAGCTATGT
CAAGAATTAATTAACCGTTGCCGAATTCCTGTTGAGAAATCATTAAATGA
TGCTAGGCTTGATAAATCGGATATTAATGAAATTGTTTTAGTTGGTGGTT
CAACACGAATCCCAGCAGTTCAAAAATTAGTTGAATCATTAACTGGTAAA
AAGCCTAATCAGTCTGTCAACCCAGATGAAGTTGTTGCAATTGGAGCTGC
AATTCAAGCAGGTATTTTAGCGGGTGAAATTAAAGATATTTTACTATTAG
ATGTAACTCCATTATCTTTAGGTGTTGAAACACTTGGTGGTGTAATGACA
AAAATTATTGCTCGAAATACAACAATCCCTGTTAAAAAATCTGAAACCTT
TTCAACAGCGGTTGAAAATCAAACAAATGTAGAAATTCATATTTTACAAG
GTGAACGAGAATTAGTTTCGGGAAATAAAAGTCTAGGAAACTTTAGATTA
GATGGAATTCCACCTGCTGATCGTGGCGTTCCTCAAATTGAAGTTACATT
TGATATTGATGTTGATGGTATTCTATCAGTAAAAGCAAGAGAAAAAGAAA
CAGGTGTTGAACAATCGGTAACAATTCAAGGGGCATCAAATTTAAACGAA
GCAGAAGTTGAGGGAATGTTAGAAGAAGCAGAAAAATTTGCTTCAGCTGA
TAAAGAAAAACGTCAAACCATTGATCTAAAAAATCAAGCTGAAGCATTAT
GTTTCGAAGCTGAAAAAGAACTTTCTCTTTTAGAAGATACGGGCTCAGAG
GAGACGAAACAAAAGGTTACAAAATTAATTGAAACTATTCGCCAAGAAAT
TCAAGTTGATAATTTTGAAAATTTAAAATTACAAGTTGAAGAATTAAAAA
CTGAAATGAAAAATATGGTAGAAGCAAAAATGAATAGTGAATCAAATTCA
GACCCAATGTCGAATTTAAATGATTTATAA
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protein sequence of Gvermi2172.t1

>Gvermi2172.t1 ID=Gvermi2172.t1|Name=Gvermi2172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=460bp
MDAGKIAGIEVLRIINEPTAASLAYGLDKKQNETILVFDLGGGTFDVSIL
EVGDGIFEVLSTAGDTTLGGDDFDNLLVKWLMNDFKEKEGIDLSSDIQAL
QRLTEAAEKAKIELSTVEKTTIHLPFITADKTGPKHIEKELTRDIFEKLC
QELINRCRIPVEKSLNDARLDKSDINEIVLVGGSTRIPAVQKLVESLTGK
KPNQSVNPDEVVAIGAAIQAGILAGEIKDILLLDVTPLSLGVETLGGVMT
KIIARNTTIPVKKSETFSTAVENQTNVEIHILQGERELVSGNKSLGNFRL
DGIPPADRGVPQIEVTFDIDVDGILSVKAREKETGVEQSVTIQGASNLNE
AEVEGMLEEAEKFASADKEKRQTIDLKNQAEALCFEAEKELSLLEDTGSE
ETKQKVTKLIETIRQEIQVDNFENLKLQVEELKTEMKNMVEAKMNSESNS
DPMSNLNDL*
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mRNA from alignment at ScGOVlb_52:46664..48043-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2172.t1 ID=Gvermi2172.t1|Name=Gvermi2172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at ScGOVlb_52:46664..48043- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGCTGGAAAAATTGCCGGTATTGAAGTGTTACGTATTATTAATGA
ACCAACAGCTGCTTCATTAGCTTATGGTTTAGATAAAAAACAAAATGAAA
CTATATTAGTTTTTGATTTAGGTGGGGGAACATTTGATGTTTCAATTTTA
GAAGTTGGTGATGGTATTTTTGAGGTTTTATCAACAGCTGGAGATACAAC
ATTAGGTGGTGATGACTTTGATAATCTTCTTGTTAAGTGGTTAATGAATG
ATTTCAAAGAAAAAGAAGGAATTGATTTAAGTAGTGATATTCAAGCTTTA
CAACGTCTAACAGAAGCTGCTGAAAAAGCAAAAATTGAATTATCAACTGT
TGAAAAAACGACTATTCATTTACCTTTTATTACGGCAGATAAGACAGGTC
CAAAACATATTGAAAAAGAATTAACTCGAGATATTTTTGAGAAGCTATGT
CAAGAATTAATTAACCGTTGCCGAATTCCTGTTGAGAAATCATTAAATGA
TGCTAGGCTTGATAAATCGGATATTAATGAAATTGTTTTAGTTGGTGGTT
CAACACGAATCCCAGCAGTTCAAAAATTAGTTGAATCATTAACTGGTAAA
AAGCCTAATCAGTCTGTCAACCCAGATGAAGTTGTTGCAATTGGAGCTGC
AATTCAAGCAGGTATTTTAGCGGGTGAAATTAAAGATATTTTACTATTAG
ATGTAACTCCATTATCTTTAGGTGTTGAAACACTTGGTGGTGTAATGACA
AAAATTATTGCTCGAAATACAACAATCCCTGTTAAAAAATCTGAAACCTT
TTCAACAGCGGTTGAAAATCAAACAAATGTAGAAATTCATATTTTACAAG
GTGAACGAGAATTAGTTTCGGGAAATAAAAGTCTAGGAAACTTTAGATTA
GATGGAATTCCACCTGCTGATCGTGGCGTTCCTCAAATTGAAGTTACATT
TGATATTGATGTTGATGGTATTCTATCAGTAAAAGCAAGAGAAAAAGAAA
CAGGTGTTGAACAATCGGTAACAATTCAAGGGGCATCAAATTTAAACGAA
GCAGAAGTTGAGGGAATGTTAGAAGAAGCAGAAAAATTTGCTTCAGCTGA
TAAAGAAAAACGTCAAACCATTGATCTAAAAAATCAAGCTGAAGCATTAT
GTTTCGAAGCTGAAAAAGAACTTTCTCTTTTAGAAGATACGGGCTCAGAG
GAGACGAAACAAAAGGTTACAAAATTAATTGAAACTATTCGCCAAGAAAT
TCAAGTTGATAATTTTGAAAATTTAAAATTACAAGTTGAAGAATTAAAAA
CTGAAATGAAAAATATGGTAGAAGCAAAAATGAATAGTGAATCAAATTCA
GACCCAATGTCGAATTTAAATGATTTATAA
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Coding sequence (CDS) from alignment at ScGOVlb_52:46664..48043-

>Gvermi2172.t1 ID=Gvermi2172.t1|Name=Gvermi2172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1380bp|location=Sequence derived from alignment at ScGOVlb_52:46664..48043- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGCTGGAAAAATTGCCGGTATTGAAGTGTTACGTATTATTAATGA
ACCAACAGCTGCTTCATTAGCTTATGGTTTAGATAAAAAACAAAATGAAA
CTATATTAGTTTTTGATTTAGGTGGGGGAACATTTGATGTTTCAATTTTA
GAAGTTGGTGATGGTATTTTTGAGGTTTTATCAACAGCTGGAGATACAAC
ATTAGGTGGTGATGACTTTGATAATCTTCTTGTTAAGTGGTTAATGAATG
ATTTCAAAGAAAAAGAAGGAATTGATTTAAGTAGTGATATTCAAGCTTTA
CAACGTCTAACAGAAGCTGCTGAAAAAGCAAAAATTGAATTATCAACTGT
TGAAAAAACGACTATTCATTTACCTTTTATTACGGCAGATAAGACAGGTC
CAAAACATATTGAAAAAGAATTAACTCGAGATATTTTTGAGAAGCTATGT
CAAGAATTAATTAACCGTTGCCGAATTCCTGTTGAGAAATCATTAAATGA
TGCTAGGCTTGATAAATCGGATATTAATGAAATTGTTTTAGTTGGTGGTT
CAACACGAATCCCAGCAGTTCAAAAATTAGTTGAATCATTAACTGGTAAA
AAGCCTAATCAGTCTGTCAACCCAGATGAAGTTGTTGCAATTGGAGCTGC
AATTCAAGCAGGTATTTTAGCGGGTGAAATTAAAGATATTTTACTATTAG
ATGTAACTCCATTATCTTTAGGTGTTGAAACACTTGGTGGTGTAATGACA
AAAATTATTGCTCGAAATACAACAATCCCTGTTAAAAAATCTGAAACCTT
TTCAACAGCGGTTGAAAATCAAACAAATGTAGAAATTCATATTTTACAAG
GTGAACGAGAATTAGTTTCGGGAAATAAAAGTCTAGGAAACTTTAGATTA
GATGGAATTCCACCTGCTGATCGTGGCGTTCCTCAAATTGAAGTTACATT
TGATATTGATGTTGATGGTATTCTATCAGTAAAAGCAAGAGAAAAAGAAA
CAGGTGTTGAACAATCGGTAACAATTCAAGGGGCATCAAATTTAAACGAA
GCAGAAGTTGAGGGAATGTTAGAAGAAGCAGAAAAATTTGCTTCAGCTGA
TAAAGAAAAACGTCAAACCATTGATCTAAAAAATCAAGCTGAAGCATTAT
GTTTCGAAGCTGAAAAAGAACTTTCTCTTTTAGAAGATACGGGCTCAGAG
GAGACGAAACAAAAGGTTACAAAATTAATTGAAACTATTCGCCAAGAAAT
TCAAGTTGATAATTTTGAAAATTTAAAATTACAAGTTGAAGAATTAAAAA
CTGAAATGAAAAATATGGTAGAAGCAAAAATGAATAGTGAATCAAATTCA
GACCCAATGTCGAATTTAAATGATTTATAA
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