Gvermi2106.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2106.t1
Unique NameGvermi2106.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:182636..184198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2106Gvermi2106Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 182636..184198 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2106.t1.stop1Gvermi2106.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 182636..182638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2106.t1.CDS1Gvermi2106.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 182636..184198 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2106.t1.exon1Gvermi2106.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 182636..184198 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2106.t1.start1Gvermi2106.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 184196..184198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2106.t1Gvermi2106.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 182636..184198 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2106.t1 ID=Gvermi2106.t1|Name=Gvermi2106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=521bp
MANNGLNSISFGFLEDNKKLENLFERGFGRVGEAKRFLSRISQAQLSGQE
AVRTIPNTREHQDLLMKARSAGHFFHITGGGGLANSADALIAFERKDMLK
KAAALEKAKEKLVEFQSKNIGPAKQTINNKVYKDWKCPELRIVVDYLRGP
SIPENEVATSKMKHGELKRLFETKYKDTKKPAWKKWGSRQERKLRKLKSG
DINSMKETAIYGRAIETTNEYFLERLLALRPTRRKSILESFLMMVDPVEK
QFYIDVLQNGQGEHDSHSLSSSSGSGDSDDSFSTLGSFGFGRDDVDSSDS
IARSQQEQVLSISGSQESENEHLSLLDERKRSASVGSSDSDTSSSDDDGL
DTAAHFDVSKVRKDLSLGERKRSAFVGSSDSDNSSSDDTAAHFDAFKAKK
DVSKRSSSVGSSDSDKSSSDDDSNGVAVRFDALKAKKAYAAEHKEKFDSL
NKVVERMESNSRLRTPDYVVLLEARGVEVPIRSNTKALWKQHKDDPLIWE
QVEWTEADEKILLELEAAMN*
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spliced messenger RNA

>Gvermi2106.t1 ID=Gvermi2106.t1|Name=Gvermi2106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at ScGOVlb_191:182636..184198- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAACAATGGCCTTAATTCGATTTCTTTTGGCTTTCTTGAAGACAA
CAAGAAGCTGGAAAATTTGTTCGAACGTGGCTTCGGTCGAGTTGGTGAAG
CCAAGAGATTCCTATCGCGGATCTCGCAAGCCCAACTGAGTGGCCAGGAA
GCAGTACGAACAATTCCTAATACACGCGAGCATCAAGATCTTCTTATGAA
GGCGCGTTCGGCAGGGCATTTCTTCCACATAACAGGCGGTGGCGGATTGG
CGAACTCAGCCGATGCGCTGATTGCATTCGAGCGCAAGGACATGTTAAAA
AAAGCGGCAGCTCTGGAAAAAGCGAAAGAGAAGCTTGTCGAGTTCCAAAG
CAAAAACATTGGGCCCGCGAAACAAACTATCAACAACAAAGTCTACAAAG
ACTGGAAGTGTCCTGAGCTCCGCATCGTCGTTGACTATCTTCGAGGACCA
TCGATACCAGAGAACGAAGTCGCCACGTCGAAGATGAAGCATGGAGAACT
TAAGCGCCTCTTCGAAACGAAGTACAAGGATACGAAGAAGCCAGCATGGA
AGAAATGGGGCAGCCGGCAGGAAAGAAAGCTGCGAAAGCTGAAGTCTGGA
GATATCAACTCAATGAAAGAAACTGCAATCTACGGCAGGGCGATCGAGAC
AACAAACGAGTACTTTTTAGAAAGGCTCCTGGCGCTTCGGCCGACGCGGC
GAAAGTCCATACTGGAGAGCTTTTTGATGATGGTAGATCCAGTCGAAAAG
CAGTTCTACATCGATGTCTTACAGAACGGACAGGGTGAACACGACAGCCA
TAGTCTTTCGTCCAGTAGCGGCAGCGGCGACAGCGACGACAGCTTTTCAA
CGCTGGGCAGTTTTGGTTTTGGTCGTGATGACGTCGATTCTTCCGACAGC
ATCGCACGCAGTCAACAAGAACAAGTCCTTTCAATATCGGGCAGTCAAGA
ATCGGAAAACGAACATTTGAGCTTATTGGATGAACGCAAGCGTTCCGCTT
CTGTTGGCAGCAGTGACTCCGACACTAGTAGCAGCGACGATGACGGCCTT
GACACTGCAGCCCATTTTGATGTATCGAAGGTTCGGAAAGATTTGAGCTT
GGGCGAACGCAAGCGGTCAGCCTTCGTCGGCAGCAGTGACTCCGACAACA
GCAGTAGCGACGACACTGCCGCCCACTTCGATGCTTTTAAGGCAAAGAAA
GATGTGAGCAAGCGTTCGTCCTCTGTCGGCAGCAGTGACTCCGACAAGAG
CAGCAGCGACGATGACAGCAATGGCGTTGCCGTCCGTTTTGATGCCTTAA
AGGCAAAGAAAGCGTATGCCGCCGAGCATAAAGAGAAATTTGATAGTCTC
AACAAGGTAGTGGAAAGAATGGAATCTAACTCGAGGCTTAGGACCCCAGA
CTACGTTGTGTTGCTGGAAGCTCGTGGTGTGGAGGTCCCAATTCGTTCAA
ACACTAAAGCTCTATGGAAACAGCACAAGGACGATCCTTTGATCTGGGAG
CAGGTTGAGTGGACTGAGGCCGACGAAAAGATCTTATTGGAACTGGAGGC
CGCTATGAATTGA
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protein sequence of Gvermi2106.t1

>Gvermi2106.t1 ID=Gvermi2106.t1|Name=Gvermi2106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=521bp
MANNGLNSISFGFLEDNKKLENLFERGFGRVGEAKRFLSRISQAQLSGQE
AVRTIPNTREHQDLLMKARSAGHFFHITGGGGLANSADALIAFERKDMLK
KAAALEKAKEKLVEFQSKNIGPAKQTINNKVYKDWKCPELRIVVDYLRGP
SIPENEVATSKMKHGELKRLFETKYKDTKKPAWKKWGSRQERKLRKLKSG
DINSMKETAIYGRAIETTNEYFLERLLALRPTRRKSILESFLMMVDPVEK
QFYIDVLQNGQGEHDSHSLSSSSGSGDSDDSFSTLGSFGFGRDDVDSSDS
IARSQQEQVLSISGSQESENEHLSLLDERKRSASVGSSDSDTSSSDDDGL
DTAAHFDVSKVRKDLSLGERKRSAFVGSSDSDNSSSDDTAAHFDAFKAKK
DVSKRSSSVGSSDSDKSSSDDDSNGVAVRFDALKAKKAYAAEHKEKFDSL
NKVVERMESNSRLRTPDYVVLLEARGVEVPIRSNTKALWKQHKDDPLIWE
QVEWTEADEKILLELEAAMN*
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mRNA from alignment at ScGOVlb_191:182636..184198-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2106.t1 ID=Gvermi2106.t1|Name=Gvermi2106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at ScGOVlb_191:182636..184198- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAAACAATGGCCTTAATTCGATTTCTTTTGGCTTTCTTGAAGACAA
CAAGAAGCTGGAAAATTTGTTCGAACGTGGCTTCGGTCGAGTTGGTGAAG
CCAAGAGATTCCTATCGCGGATCTCGCAAGCCCAACTGAGTGGCCAGGAA
GCAGTACGAACAATTCCTAATACACGCGAGCATCAAGATCTTCTTATGAA
GGCGCGTTCGGCAGGGCATTTCTTCCACATAACAGGCGGTGGCGGATTGG
CGAACTCAGCCGATGCGCTGATTGCATTCGAGCGCAAGGACATGTTAAAA
AAAGCGGCAGCTCTGGAAAAAGCGAAAGAGAAGCTTGTCGAGTTCCAAAG
CAAAAACATTGGGCCCGCGAAACAAACTATCAACAACAAAGTCTACAAAG
ACTGGAAGTGTCCTGAGCTCCGCATCGTCGTTGACTATCTTCGAGGACCA
TCGATACCAGAGAACGAAGTCGCCACGTCGAAGATGAAGCATGGAGAACT
TAAGCGCCTCTTCGAAACGAAGTACAAGGATACGAAGAAGCCAGCATGGA
AGAAATGGGGCAGCCGGCAGGAAAGAAAGCTGCGAAAGCTGAAGTCTGGA
GATATCAACTCAATGAAAGAAACTGCAATCTACGGCAGGGCGATCGAGAC
AACAAACGAGTACTTTTTAGAAAGGCTCCTGGCGCTTCGGCCGACGCGGC
GAAAGTCCATACTGGAGAGCTTTTTGATGATGGTAGATCCAGTCGAAAAG
CAGTTCTACATCGATGTCTTACAGAACGGACAGGGTGAACACGACAGCCA
TAGTCTTTCGTCCAGTAGCGGCAGCGGCGACAGCGACGACAGCTTTTCAA
CGCTGGGCAGTTTTGGTTTTGGTCGTGATGACGTCGATTCTTCCGACAGC
ATCGCACGCAGTCAACAAGAACAAGTCCTTTCAATATCGGGCAGTCAAGA
ATCGGAAAACGAACATTTGAGCTTATTGGATGAACGCAAGCGTTCCGCTT
CTGTTGGCAGCAGTGACTCCGACACTAGTAGCAGCGACGATGACGGCCTT
GACACTGCAGCCCATTTTGATGTATCGAAGGTTCGGAAAGATTTGAGCTT
GGGCGAACGCAAGCGGTCAGCCTTCGTCGGCAGCAGTGACTCCGACAACA
GCAGTAGCGACGACACTGCCGCCCACTTCGATGCTTTTAAGGCAAAGAAA
GATGTGAGCAAGCGTTCGTCCTCTGTCGGCAGCAGTGACTCCGACAAGAG
CAGCAGCGACGATGACAGCAATGGCGTTGCCGTCCGTTTTGATGCCTTAA
AGGCAAAGAAAGCGTATGCCGCCGAGCATAAAGAGAAATTTGATAGTCTC
AACAAGGTAGTGGAAAGAATGGAATCTAACTCGAGGCTTAGGACCCCAGA
CTACGTTGTGTTGCTGGAAGCTCGTGGTGTGGAGGTCCCAATTCGTTCAA
ACACTAAAGCTCTATGGAAACAGCACAAGGACGATCCTTTGATCTGGGAG
CAGGTTGAGTGGACTGAGGCCGACGAAAAGATCTTATTGGAACTGGAGGC
CGCTATGAATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_191:182636..184198-

>Gvermi2106.t1 ID=Gvermi2106.t1|Name=Gvermi2106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1563bp|location=Sequence derived from alignment at ScGOVlb_191:182636..184198- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAAACAATGGCCTTAATTCGATTTCTTTTGGCTTTCTTGAAGACAA
CAAGAAGCTGGAAAATTTGTTCGAACGTGGCTTCGGTCGAGTTGGTGAAG
CCAAGAGATTCCTATCGCGGATCTCGCAAGCCCAACTGAGTGGCCAGGAA
GCAGTACGAACAATTCCTAATACACGCGAGCATCAAGATCTTCTTATGAA
GGCGCGTTCGGCAGGGCATTTCTTCCACATAACAGGCGGTGGCGGATTGG
CGAACTCAGCCGATGCGCTGATTGCATTCGAGCGCAAGGACATGTTAAAA
AAAGCGGCAGCTCTGGAAAAAGCGAAAGAGAAGCTTGTCGAGTTCCAAAG
CAAAAACATTGGGCCCGCGAAACAAACTATCAACAACAAAGTCTACAAAG
ACTGGAAGTGTCCTGAGCTCCGCATCGTCGTTGACTATCTTCGAGGACCA
TCGATACCAGAGAACGAAGTCGCCACGTCGAAGATGAAGCATGGAGAACT
TAAGCGCCTCTTCGAAACGAAGTACAAGGATACGAAGAAGCCAGCATGGA
AGAAATGGGGCAGCCGGCAGGAAAGAAAGCTGCGAAAGCTGAAGTCTGGA
GATATCAACTCAATGAAAGAAACTGCAATCTACGGCAGGGCGATCGAGAC
AACAAACGAGTACTTTTTAGAAAGGCTCCTGGCGCTTCGGCCGACGCGGC
GAAAGTCCATACTGGAGAGCTTTTTGATGATGGTAGATCCAGTCGAAAAG
CAGTTCTACATCGATGTCTTACAGAACGGACAGGGTGAACACGACAGCCA
TAGTCTTTCGTCCAGTAGCGGCAGCGGCGACAGCGACGACAGCTTTTCAA
CGCTGGGCAGTTTTGGTTTTGGTCGTGATGACGTCGATTCTTCCGACAGC
ATCGCACGCAGTCAACAAGAACAAGTCCTTTCAATATCGGGCAGTCAAGA
ATCGGAAAACGAACATTTGAGCTTATTGGATGAACGCAAGCGTTCCGCTT
CTGTTGGCAGCAGTGACTCCGACACTAGTAGCAGCGACGATGACGGCCTT
GACACTGCAGCCCATTTTGATGTATCGAAGGTTCGGAAAGATTTGAGCTT
GGGCGAACGCAAGCGGTCAGCCTTCGTCGGCAGCAGTGACTCCGACAACA
GCAGTAGCGACGACACTGCCGCCCACTTCGATGCTTTTAAGGCAAAGAAA
GATGTGAGCAAGCGTTCGTCCTCTGTCGGCAGCAGTGACTCCGACAAGAG
CAGCAGCGACGATGACAGCAATGGCGTTGCCGTCCGTTTTGATGCCTTAA
AGGCAAAGAAAGCGTATGCCGCCGAGCATAAAGAGAAATTTGATAGTCTC
AACAAGGTAGTGGAAAGAATGGAATCTAACTCGAGGCTTAGGACCCCAGA
CTACGTTGTGTTGCTGGAAGCTCGTGGTGTGGAGGTCCCAATTCGTTCAA
ACACTAAAGCTCTATGGAAACAGCACAAGGACGATCCTTTGATCTGGGAG
CAGGTTGAGTGGACTGAGGCCGACGAAAAGATCTTATTGGAACTGGAGGC
CGCTATGAATTGA
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