|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 157072.XP_008873240.1 |
| Max annot lvl | 157072.XP_008873240.1|- |
| Evalue | 8.06e-30 |
| EggNOG OGs | 2CMKC@1|root,2QQNW@2759|Eukaryota |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi2086.t1 ID=Gvermi2086.t1|Name=Gvermi2086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=734bp MAGSADAPPAGPVPKKRKKADLTHDERRDIVKRLLQEVIPGSLDGRLKRG AIKNLAREVGRDKSTISRVWARAKANKTAEDGGTAAYNASPRRVGRCGRK QLYNRDDVREAILKVPTHRRKTLRSLSSAIGIPTTSLWEMKHDKDDPVIV PHSNAIKPALTEANKYWRFEYAKFFLADPNNVYNFNDMYQWVHVDEKWFF LTEEMLHMYLVPGEKAPQRKCKHKSHIIKVMFLCAIAKPSDDENPEESRR LHMHFAQAEIRLNEDNRSHQEADNADHNGNGDDIQLTAGLDSTVSFPWIP VLYGLDRTVCGATVKSEKGARCIWAHWAKFCKERSRPAHADPVDSTNLSP TTPVGLDLYRKESFTQFNSDENSFDKPLIGSFFSFLLSTNCTSNILTKAK TFLNAHLRAECKLRMMAVGNPNQDLGMAKVGCISSVKSCVEKALGETSQK SMDQCRDLHALLDRHMSEHEIRDMLESVFLPKPGGQVEQMDPINRINFGS TFTASQQDVRRGDEHYRQFLVQRFLRLCRKIGSMPGTIMSGIITRFAKHN KYGRLEQMGTVPHLDAIRDAEAFFGLSLLFRIIGLGEKISFLDYKKLYAV ASFRSTESGNVQISQETYRANWRKFFSDSKVNVNKLTSIWRLQAFHEMDD DGVPDGHKARVSGHRSQQHDSSAAQRDCYQTMPSVKGMVSRACGDPDRPR AHSPSWRAYGREKVCYESVLKQSHHSNKKSTSA* back to topspliced messenger RNA >Gvermi2086.t1 ID=Gvermi2086.t1|Name=Gvermi2086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2202bp|location=Sequence derived from alignment at ScGOVlb_191:102441..105923- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCGGTTCTGCTGATGCTCCGCCTGCAGGCCCTGTCCCAAAGAAAAG GAAGAAGGCTGACCTAACTCACGATGAAAGGAGAGATATTGTCAAACGTC TCCTACAGGAGGTCATACCTGGGTCTCTTGATGGCCGTCTCAAAAGAGGT GCCATTAAAAATTTGGCGCGCGAAGTCGGGCGAGACAAATCCACGATTTC GCGGGTGTGGGCGCGCGCCAAGGCGAACAAAACGGCGGAGGATGGTGGAA CGGCAGCCTACAATGCATCACCCAGGAGAGTGGGTAGATGTGGGAGAAAG CAGCTATACAACAGAGATGATGTCAGGGAGGCTATCTTAAAGGTCCCAAC ACACAGGCGTAAGACACTGCGTTCGCTTTCATCTGCCATTGGCATTCCGA CCACAAGCCTTTGGGAAATGAAACATGACAAAGATGATCCTGTAATCGTT CCCCATTCGAACGCAATTAAGCCAGCCCTGACAGAGGCAAACAAGTATTG GCGCTTCGAATACGCTAAATTCTTTCTTGCTGATCCCAACAATGTCTACA ACTTCAATGACATGTATCAGTGGGTACACGTGGACGAAAAATGGTTCTTT TTGACGGAAGAGATGCTTCACATGTATCTCGTGCCGGGAGAAAAAGCTCC CCAGCGCAAGTGCAAACACAAGAGCCATATTATCAAAGTCATGTTCTTGT GTGCAATTGCAAAGCCCAGCGACGACGAAAATCCGGAAGAGAGCCGTCGC CTCCATATGCATTTTGCTCAGGCCGAGATTCGACTGAACGAAGATAACCG CAGCCACCAAGAAGCAGATAATGCTGACCACAATGGCAACGGCGACGACA TTCAATTGACTGCTGGCCTCGACTCAACGGTTTCCTTCCCTTGGATTCCA GTTCTATATGGTCTTGATCGCACAGTATGCGGAGCTACTGTCAAATCTGA AAAGGGCGCCAGATGCATCTGGGCGCACTGGGCCAAATTCTGCAAAGAAA GGAGCAGACCTGCCCATGCAGATCCAGTCGACAGCACCAATCTTAGTCCA ACCACCCCGGTTGGCTTGGATTTGTACCGCAAGGAGTCCTTTACCCAATT CAATAGTGACGAAAATTCCTTTGACAAGCCGTTGATTGGTTCTTTTTTTT CCTTCCTTCTGAGCACCAACTGCACGTCGAACATTCTTACCAAAGCAAAG ACGTTTCTCAATGCCCATTTAAGAGCCGAGTGCAAGCTTCGTATGATGGC AGTCGGCAACCCCAATCAGGATTTGGGAATGGCAAAGGTCGGTTGCATCA GCTCAGTCAAGAGCTGTGTGGAGAAAGCACTTGGCGAGACATCCCAAAAA TCAATGGACCAATGCAGAGACTTGCACGCTCTCTTAGACCGCCACATGTC CGAACACGAGATCCGAGACATGCTGGAGTCTGTCTTCTTGCCAAAACCAG GGGGGCAAGTGGAACAGATGGATCCTATTAACAGAATCAATTTTGGTTCG ACCTTCACTGCATCACAACAAGACGTCAGACGCGGCGATGAACATTACCG CCAGTTTCTCGTACAGCGCTTCCTCCGCCTGTGCAGGAAGATTGGATCTA TGCCAGGGACCATTATGTCAGGCATCATTACTCGATTTGCCAAACATAAT AAGTATGGCCGCCTGGAGCAGATGGGTACTGTTCCCCATCTGGATGCAAT TCGAGACGCGGAAGCGTTTTTCGGACTTAGCCTACTGTTCCGCATCATTG GATTGGGCGAGAAGATCAGCTTCTTGGATTACAAAAAACTATATGCCGTT GCATCCTTCCGCTCCACGGAAAGTGGAAATGTCCAAATCTCCCAGGAGAC TTACCGTGCCAACTGGCGCAAGTTTTTTTCTGACAGTAAGGTCAACGTTA ACAAGCTCACTTCTATCTGGCGGCTTCAGGCTTTTCACGAGATGGACGAC GACGGTGTGCCCGACGGCCACAAAGCCCGTGTTTCTGGGCACCGCAGCCA GCAGCACGACAGCTCAGCAGCCCAGAGAGATTGCTACCAGACCATGCCTT CGGTAAAAGGAATGGTCTCCCGTGCGTGTGGTGATCCAGACCGCCCGAGA GCCCACTCTCCTTCCTGGAGGGCTTATGGTCGAGAAAAAGTGTGCTATGA GTCTGTACTCAAACAATCCCATCATTCAAACAAGAAGTCAACCAGCGCCT AG back to topprotein sequence of Gvermi2086.t1 >Gvermi2086.t1 ID=Gvermi2086.t1|Name=Gvermi2086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=734bp
MAGSADAPPAGPVPKKRKKADLTHDERRDIVKRLLQEVIPGSLDGRLKRG AIKNLAREVGRDKSTISRVWARAKANKTAEDGGTAAYNASPRRVGRCGRK QLYNRDDVREAILKVPTHRRKTLRSLSSAIGIPTTSLWEMKHDKDDPVIV PHSNAIKPALTEANKYWRFEYAKFFLADPNNVYNFNDMYQWVHVDEKWFF LTEEMLHMYLVPGEKAPQRKCKHKSHIIKVMFLCAIAKPSDDENPEESRR LHMHFAQAEIRLNEDNRSHQEADNADHNGNGDDIQLTAGLDSTVSFPWIP VLYGLDRTVCGATVKSEKGARCIWAHWAKFCKERSRPAHADPVDSTNLSP TTPVGLDLYRKESFTQFNSDENSFDKPLIGSFFSFLLSTNCTSNILTKAK TFLNAHLRAECKLRMMAVGNPNQDLGMAKVGCISSVKSCVEKALGETSQK SMDQCRDLHALLDRHMSEHEIRDMLESVFLPKPGGQVEQMDPINRINFGS TFTASQQDVRRGDEHYRQFLVQRFLRLCRKIGSMPGTIMSGIITRFAKHN KYGRLEQMGTVPHLDAIRDAEAFFGLSLLFRIIGLGEKISFLDYKKLYAV ASFRSTESGNVQISQETYRANWRKFFSDSKVNVNKLTSIWRLQAFHEMDD DGVPDGHKARVSGHRSQQHDSSAAQRDCYQTMPSVKGMVSRACGDPDRPR AHSPSWRAYGREKVCYESVLKQSHHSNKKSTSA* back to topmRNA from alignment at ScGOVlb_191:102441..105923- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi2086.t1 ID=Gvermi2086.t1|Name=Gvermi2086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3483bp|location=Sequence derived from alignment at ScGOVlb_191:102441..105923- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCCGGTTCTGCTGATGCTCCGCCTGCAGGCCCTGTCCCAAAGAAAAG
GAAGAAGGCTGACCTAACTCACGATGAAAGGAGAGATATTGTCAAACGTC
TCCTACAGGAGGTCATACCTGGGTCTCTTGATGGCCGTCTCAAAAGAGGT
GCCATTAAAAATTTGGCGCGCGAAGTCGGGCGAGACAAATCCACGATTTC
GCGGGTGTGGGCGCGCGCCAAGGCGAACAAAACGGCGGAGGATGGTGGAA
CGGCAGCCTACAATGCATCACCCAGGAGAGTGGGTAGATGTGGGAGAAAG
CAGCTATACAACAGAGATGATGTCAGGGAGGCTATCTTAAAGGTCCCAAC
ACACAGGCGTAAGACACTGCGTTCGCTTTCATCTGCCATTGGCATTCCGA
CCACAAGCCTTTGGGAAATGAAACATGACAAAGATGATCCTGTAATCGTT
CCCCATTCGAACGCAATTAAGCCAGCCCTGACAGAGGCAAACAAGTATTG
GCGCTTCGAATACGCTAAATTCTTTCTTGCTGATCCCAACAATGTCTACA
ACTTCAATGACATGTATCAGTGGGTACACGTGGACGAAAAATGGTTCTTT
TTGACGGAAGAGATGCTTCACATGTATCTCGTGCCGGGAGAAAAAGCTCC
CCAGCGCAAGTGCAAACACAAGAGCCATATTATCAAAGTCATGTTCTTGT
GTGCAATTGCAAAGCCCAGGTACGATGAAGAAGGAAACTGCACGTTCGAC
GGAAAGATAGGCATGTGGCCATTCATCGAGGAACACGTCGCAAAAAGAAG
CTCTGCCAAACGCCCAGCGGGAACTATTGAATGGAAGTGTCAGACAGTGA
CAAAAAAGGTGTACCGAGACTATATGATTAACAAGGTTTTGCCCGCACTC
AACAGCAAGTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNACGCGATTAGCCAGGGGAGTTTTAGACGAATTTTGCA
ATTCCCCGCTGCTCCCAGTACGACTGCTGCACATGCGTTGTGTTCAAAGG
AGAGTGTCCTACTGGGACTGAACATCAATCGCGCGAACAAAGAGAATGTC
CTACTGGGATCGAACATCAACCGCGCAACCACACGTCTTTTGTTTGACGG
AAAACACTGTGGCAGTCACATCGACCTATGGGGAGCTCACGTTGACAATA
AATGTCGTGGTCGATACAGTGGAGGAAAAGGTTTTGTGACGACCAATCGA
AGACATTTTGGAGTTGTGATGCACATGTCTACATTTTGTGTACCACAGAC
GCTCGGACACCTCGAGAGGTTTACGAAGATACGTGGGCGCATTAGTGGTC
ATATTGAAGAAGACATTCATCTTGACATTTTGGAAGATCCAGTGAGTTTG
TGTCGCGACATACTTATTGAGGAATCGCTGACCGGCATTCTAGGGAATCC
GATGAGTTTATGTGTGACGTCACCCGCGGCAAAACTTCCGTGCTATTTTT
TGGCTGATTTTCTCGTGTCGGTCACGCTCTCAGCGTGACGCGTGACCGTC
AGCATATCATACCCATCATCAACCAAAAACAGAACCCGACAACAACATAG
AACAATGTACTTCAATCATGTGCTGATGTGCTTGGAATATGCCACAACAA
CTGCGACCTTGAGCTGTGAGCTTTGAGCTGTGAAGATAAAGACTGTTACA
GACCGTTCTGATTTGCTTGAATCCGCCATCAGCAAATAGTAGTAGTATGC
CAAGTCGTCGTGGCCGTGGTGTTCGCTCGGGAGCCAGCAGGCCCACACGC
TCCGGGCAGCGCCACAATCTTTGGTCCAGTCTTTTGCCAGACGAGCCTGC
CTGTGATGACAGCGACGACGAAAATCCGGAAGAGAGCCGTCGCCTCCATA
TGCATTTTGCTCAGGCCGAGATTCGACTGAACGAAGATAACCGCAGCCAC
CAAGAAGCAGATAATGCTGACCACAATGGCAACGGCGACGACATTCAATT
GACTGCTGGCCTCGACTCAACGGTTTCCTTCCCTTGGATTCCAGTTCTAT
ATGGTCTTGATCGCACAGTATGCGGAGCTACTGTCAAATCTGAAAAGGGC
GCCAGATGCATCTGGGCGCACTGGGCCAAATTCTGCAAAGAAAGGAGCAG
ACCTGCCCATGCAGATCCAGTCGACAGCACCAATCTTAGTCCAACCACCC
CGGTTGGCTTGGATTTGTACCGCAAGGAGTCCTTTACCCAATTCAATAGT
GACGAAAATTCCTTTGACAAGCCGTTGATTGGTTCTTTTTTTTCCTTCCT
TCTGAGCACCAACTGCACGTCGAACATTCTTACCAAAGCAAAGACGTTTC
TCAATGCCCATTTAAGAGCCGAGTGCAAGCTTCGTATGATGGCAGTCGGC
AACCCCAATCAGGATTTGGGAATGGCAAAGGTCGGTTGCATCAGCTCAGT
CAAGAGCTGTGTGGAGAAAGCACTTGGCGAGACATCCCAAAAATCAATGG
ACCAATGCAGAGACTTGCACGCTCTCTTAGACCGCCACATGTCCGAACAC
GAGATCCGAGGTAAGCCACTGTTTGATTTAATGCGCTTCACTCATGTGGC
CAAAGAAACATACTAACACACATAATGTTTTGTCGTGGTGTGCTTTAGAC
ATGCTGGAGTCTGTCTTCTTGCCAAAACCAGGGGGGCAAGTGGAACAGAT
GGATCCTATTAACAGAATCAATTTTGGTTCGACCTTCACTGCATCACAAC
AAGACGTCAGACGCGGCGATGAACATTACCGCCAGTTTCTCGTACAGCGC
TTCCTCCGCCTGTGCAGGAAGATTGGATCTATGCCAGGGACCATTATGTC
AGGCATCATTACTCGATTTGCCAAACATAATAAGTATGGCCGCCTGGAGC
AGATGGGTACTGTTCCCCATCTGGATGCAATTCGAGACGCGGAAGCGTTT
TTCGGACTTAGCCTACTGTTCCGCATCATTGGATTGGGCGAGAAGATCAG
CTTCTTGGATTACAAAAAACTATATGCCGTTGCATCCTTCCGCTCCACGG
AAAGTGGAAATGTCCAAATCTCCCAGGAGACTTACCGTGCCAACTGGCGC
AAGTTTTTTTCTGACAGTAAGGTCAACGTTAACAAGCTCACTTCTATCTG
GCGGCTTCAGGCTTTTCACGAGATGGACGACGACGGTGTGCCCGACGGCC
ACAAAGCCCGTGTTTCTGGGCACCGCAGCCAGCAGCACGACAGCTCAGCA
GCCCAGAGAGATTGCTACCAGACCATGCCTTCGGTAAAAGGAATGGTCTC
CCGTGCGTGTGGTGATCCAGACCGCCCGAGAGCCCACTCTCCTTCCTGGA
GGGCTTATGGTCGAGAAAAAGTGTGCTATGAGTCTGTACTCAAACAATCC
CATCATTCAAACAAGAAGTCAACCAGCGCCTAG back to topCoding sequence (CDS) from alignment at ScGOVlb_191:102441..105923- >Gvermi2086.t1 ID=Gvermi2086.t1|Name=Gvermi2086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2202bp|location=Sequence derived from alignment at ScGOVlb_191:102441..105923- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCCGGTTCTGCTGATGCTCCGCCTGCAGGCCCTGTCCCAAAGAAAAG GAAGAAGGCTGACCTAACTCACGATGAAAGGAGAGATATTGTCAAACGTC TCCTACAGGAGGTCATACCTGGGTCTCTTGATGGCCGTCTCAAAAGAGGT GCCATTAAAAATTTGGCGCGCGAAGTCGGGCGAGACAAATCCACGATTTC GCGGGTGTGGGCGCGCGCCAAGGCGAACAAAACGGCGGAGGATGGTGGAA CGGCAGCCTACAATGCATCACCCAGGAGAGTGGGTAGATGTGGGAGAAAG CAGCTATACAACAGAGATGATGTCAGGGAGGCTATCTTAAAGGTCCCAAC ACACAGGCGTAAGACACTGCGTTCGCTTTCATCTGCCATTGGCATTCCGA CCACAAGCCTTTGGGAAATGAAACATGACAAAGATGATCCTGTAATCGTT CCCCATTCGAACGCAATTAAGCCAGCCCTGACAGAGGCAAACAAGTATTG GCGCTTCGAATACGCTAAATTCTTTCTTGCTGATCCCAACAATGTCTACA ACTTCAATGACATGTATCAGTGGGTACACGTGGACGAAAAATGGTTCTTT TTGACGGAAGAGATGCTTCACATGTATCTCGTGCCGGGAGAAAAAGCTCC CCAGCGCAAGTGCAAACACAAGAGCCATATTATCAAAGTCATGTTCTTGT GTGCAATTGCAAAGCCCAGCGACGACGAAAATCCGGAAGAGAGCCGTCGC CTCCATATGCATTTTGCTCAGGCCGAGATTCGACTGAACGAAGATAACCG CAGCCACCAAGAAGCAGATAATGCTGACCACAATGGCAACGGCGACGACA TTCAATTGACTGCTGGCCTCGACTCAACGGTTTCCTTCCCTTGGATTCCA GTTCTATATGGTCTTGATCGCACAGTATGCGGAGCTACTGTCAAATCTGA AAAGGGCGCCAGATGCATCTGGGCGCACTGGGCCAAATTCTGCAAAGAAA GGAGCAGACCTGCCCATGCAGATCCAGTCGACAGCACCAATCTTAGTCCA ACCACCCCGGTTGGCTTGGATTTGTACCGCAAGGAGTCCTTTACCCAATT CAATAGTGACGAAAATTCCTTTGACAAGCCGTTGATTGGTTCTTTTTTTT CCTTCCTTCTGAGCACCAACTGCACGTCGAACATTCTTACCAAAGCAAAG ACGTTTCTCAATGCCCATTTAAGAGCCGAGTGCAAGCTTCGTATGATGGC AGTCGGCAACCCCAATCAGGATTTGGGAATGGCAAAGGTCGGTTGCATCA GCTCAGTCAAGAGCTGTGTGGAGAAAGCACTTGGCGAGACATCCCAAAAA TCAATGGACCAATGCAGAGACTTGCACGCTCTCTTAGACCGCCACATGTC CGAACACGAGATCCGAGACATGCTGGAGTCTGTCTTCTTGCCAAAACCAG GGGGGCAAGTGGAACAGATGGATCCTATTAACAGAATCAATTTTGGTTCG ACCTTCACTGCATCACAACAAGACGTCAGACGCGGCGATGAACATTACCG CCAGTTTCTCGTACAGCGCTTCCTCCGCCTGTGCAGGAAGATTGGATCTA TGCCAGGGACCATTATGTCAGGCATCATTACTCGATTTGCCAAACATAAT AAGTATGGCCGCCTGGAGCAGATGGGTACTGTTCCCCATCTGGATGCAAT TCGAGACGCGGAAGCGTTTTTCGGACTTAGCCTACTGTTCCGCATCATTG GATTGGGCGAGAAGATCAGCTTCTTGGATTACAAAAAACTATATGCCGTT GCATCCTTCCGCTCCACGGAAAGTGGAAATGTCCAAATCTCCCAGGAGAC TTACCGTGCCAACTGGCGCAAGTTTTTTTCTGACAGTAAGGTCAACGTTA ACAAGCTCACTTCTATCTGGCGGCTTCAGGCTTTTCACGAGATGGACGAC GACGGTGTGCCCGACGGCCACAAAGCCCGTGTTTCTGGGCACCGCAGCCA GCAGCACGACAGCTCAGCAGCCCAGAGAGATTGCTACCAGACCATGCCTT CGGTAAAAGGAATGGTCTCCCGTGCGTGTGGTGATCCAGACCGCCCGAGA GCCCACTCTCCTTCCTGGAGGGCTTATGGTCGAGAAAAAGTGTGCTATGA GTCTGTACTCAAACAATCCCATCATTCAAACAAGAAGTCAACCAGCGCCT AG back to top
|