Gvermi2084.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2084.t1
Unique NameGvermi2084.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length267
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:97205..98005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2084Gvermi2084Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 97205..98005 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2084.t1.stop1Gvermi2084.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 97205..97207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2084.t1.CDS1Gvermi2084.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 97205..98005 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2084.t1.exon1Gvermi2084.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 97205..98005 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2084.t1.start1Gvermi2084.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 98003..98005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2084.t1Gvermi2084.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 97205..98005 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2084.t1 ID=Gvermi2084.t1|Name=Gvermi2084.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=267bp
MREESFANFLDRVCGMEQGSNAVKALEGQGIKTLGPFLDQPFSSFSNLVY
LDGDDNQIKLYDWEVAMLRWARQYCVRMANDLKVGVLTCPQLDAIEEAEV
SLYRRDLDVELIKDDPVPSSRRDKTRSGNASTDTNVEFPPPMTEEERTLV
EFRKGVKRDMSVFPLLKDDSGYEAYSRTLHAIAHAQGVGDVLNGDFVPAS
DKASKDLFKEKNIFMYAVFNTTIXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXFAPCSPERC*
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spliced messenger RNA

>Gvermi2084.t1 ID=Gvermi2084.t1|Name=Gvermi2084.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=801bp|location=Sequence derived from alignment at ScGOVlb_191:97205..98005- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGAGGAGTCCTTTGCCAACTTCTTGGACAGAGTGTGTGGTATGGA
GCAGGGCAGCAATGCTGTAAAGGCACTAGAAGGACAGGGAATTAAGACTC
TAGGCCCATTTCTTGATCAACCTTTTTCTAGCTTCTCAAACCTTGTGTAC
CTAGATGGTGATGACAACCAGATTAAACTATATGACTGGGAGGTCGCTAT
GTTGCGCTGGGCACGTCAGTACTGTGTGCGTATGGCCAATGATCTCAAGG
TCGGCGTTCTCACTTGCCCACAACTAGACGCGATTGAGGAAGCAGAAGTT
TCGCTCTATCGACGTGATCTTGACGTCGAATTGATCAAGGATGACCCTGT
GCCCAGTTCGCGACGTGACAAAACGCGTAGTGGCAATGCGAGTACTGACA
CCAACGTTGAATTCCCACCACCTATGACTGAAGAAGAACGAACCCTGGTT
GAATTTCGGAAGGGAGTCAAACGTGACATGAGCGTATTCCCACTGCTCAA
AGACGATAGCGGCTACGAAGCGTACTCGCGAACACTGCACGCTATTGCGC
ACGCCCAAGGCGTTGGCGATGTCCTCAACGGTGATTTTGTACCTGCTAGC
GACAAGGCATCAAAGGATTTGTTCAAGGAAAAGAACATATTCATGTACGC
GGTATTCAACACCACTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCATTTGCGCCGTGCTCCCCAGAACGCTGCTG
A
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protein sequence of Gvermi2084.t1

>Gvermi2084.t1 ID=Gvermi2084.t1|Name=Gvermi2084.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=267bp
MREESFANFLDRVCGMEQGSNAVKALEGQGIKTLGPFLDQPFSSFSNLVY
LDGDDNQIKLYDWEVAMLRWARQYCVRMANDLKVGVLTCPQLDAIEEAEV
SLYRRDLDVELIKDDPVPSSRRDKTRSGNASTDTNVEFPPPMTEEERTLV
EFRKGVKRDMSVFPLLKDDSGYEAYSRTLHAIAHAQGVGDVLNGDFVPAS
DKASKDLFKEKNIFMYAVFNTTIXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXFAPCSPERC*
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mRNA from alignment at ScGOVlb_191:97205..98005-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2084.t1 ID=Gvermi2084.t1|Name=Gvermi2084.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=801bp|location=Sequence derived from alignment at ScGOVlb_191:97205..98005- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTGAGGAGTCCTTTGCCAACTTCTTGGACAGAGTGTGTGGTATGGA
GCAGGGCAGCAATGCTGTAAAGGCACTAGAAGGACAGGGAATTAAGACTC
TAGGCCCATTTCTTGATCAACCTTTTTCTAGCTTCTCAAACCTTGTGTAC
CTAGATGGTGATGACAACCAGATTAAACTATATGACTGGGAGGTCGCTAT
GTTGCGCTGGGCACGTCAGTACTGTGTGCGTATGGCCAATGATCTCAAGG
TCGGCGTTCTCACTTGCCCACAACTAGACGCGATTGAGGAAGCAGAAGTT
TCGCTCTATCGACGTGATCTTGACGTCGAATTGATCAAGGATGACCCTGT
GCCCAGTTCGCGACGTGACAAAACGCGTAGTGGCAATGCGAGTACTGACA
CCAACGTTGAATTCCCACCACCTATGACTGAAGAAGAACGAACCCTGGTT
GAATTTCGGAAGGGAGTCAAACGTGACATGAGCGTATTCCCACTGCTCAA
AGACGATAGCGGCTACGAAGCGTACTCGCGAACACTGCACGCTATTGCGC
ACGCCCAAGGCGTTGGCGATGTCCTCAACGGTGATTTTGTACCTGCTAGC
GACAAGGCATCAAAGGATTTGTTCAAGGAAAAGAACATATTCATGTACGC
GGTATTCAACACCACTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCATTTGCGCCGTGCTCCCCAGAACGCTGCTG
A
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Coding sequence (CDS) from alignment at ScGOVlb_191:97205..98005-

>Gvermi2084.t1 ID=Gvermi2084.t1|Name=Gvermi2084.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=801bp|location=Sequence derived from alignment at ScGOVlb_191:97205..98005- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTGAGGAGTCCTTTGCCAACTTCTTGGACAGAGTGTGTGGTATGGA
GCAGGGCAGCAATGCTGTAAAGGCACTAGAAGGACAGGGAATTAAGACTC
TAGGCCCATTTCTTGATCAACCTTTTTCTAGCTTCTCAAACCTTGTGTAC
CTAGATGGTGATGACAACCAGATTAAACTATATGACTGGGAGGTCGCTAT
GTTGCGCTGGGCACGTCAGTACTGTGTGCGTATGGCCAATGATCTCAAGG
TCGGCGTTCTCACTTGCCCACAACTAGACGCGATTGAGGAAGCAGAAGTT
TCGCTCTATCGACGTGATCTTGACGTCGAATTGATCAAGGATGACCCTGT
GCCCAGTTCGCGACGTGACAAAACGCGTAGTGGCAATGCGAGTACTGACA
CCAACGTTGAATTCCCACCACCTATGACTGAAGAAGAACGAACCCTGGTT
GAATTTCGGAAGGGAGTCAAACGTGACATGAGCGTATTCCCACTGCTCAA
AGACGATAGCGGCTACGAAGCGTACTCGCGAACACTGCACGCTATTGCGC
ACGCCCAAGGCGTTGGCGATGTCCTCAACGGTGATTTTGTACCTGCTAGC
GACAAGGCATCAAAGGATTTGTTCAAGGAAAAGAACATATTCATGTACGC
GGTATTCAACACCACTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCATTTGCGCCGTGCTCCCCAGAACGCTGCTG
A
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