Gvermi2018.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2018.t1
Unique NameGvermi2018.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2736034..2736645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2018Gvermi2018Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2736034..2736645 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2018.t1.start1Gvermi2018.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2736034..2736036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2018.t1.CDS1Gvermi2018.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2736034..2736645 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2018.t1.exon1Gvermi2018.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2736034..2736645 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2018.t1.stop1Gvermi2018.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2736643..2736645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2018.t1Gvermi2018.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2736034..2736645 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2018.t1 ID=Gvermi2018.t1|Name=Gvermi2018.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=204bp
MAFVRHWIYRTFDPNDLGAMQPLYEQSHPRAWLYGNASPFENPFQIISNA
DPKQAPLFLLTSLLLISLLNIARYGYRLQQLRAFVSSSFGRHISEDNLKA
IIRIYQSDGYHPKNISEEARRAEFYIDTIHERNATLLPAVINPERMKWSD
PPAPVQIGTPSEVFYVVHVSHTLFSRIPGAIERLKRRFGENPDYNFDLQE
RHQ*
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spliced messenger RNA

>Gvermi2018.t1 ID=Gvermi2018.t1|Name=Gvermi2018.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=612bp|location=Sequence derived from alignment at ScGOVlb_1622:2736034..2736645+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTCGTCAGACATTGGATATACCGCACGTTTGACCCCAATGACCT
GGGCGCCATGCAGCCGTTGTACGAGCAGTCACATCCAAGGGCATGGCTGT
ATGGCAACGCCTCTCCTTTCGAAAACCCATTTCAAATCATTTCTAATGCT
GACCCGAAACAAGCTCCTCTTTTTTTACTTACTTCTTTATTACTCATCAG
CCTACTAAACATAGCTAGGTATGGGTATAGGCTACAACAGCTCCGGGCTT
TTGTATCCTCAAGCTTCGGCCGCCACATATCCGAGGACAATCTGAAAGCA
ATTATTCGCATTTATCAATCAGATGGCTATCATCCAAAAAATATCTCAGA
GGAGGCGCGTCGCGCAGAATTTTACATTGACACTATCCACGAGCGGAACG
CTACTCTACTTCCCGCCGTCATCAATCCAGAACGAATGAAGTGGAGTGAT
CCTCCGGCGCCCGTACAGATTGGAACGCCTTCTGAGGTCTTTTACGTCGT
TCATGTTTCTCATACATTGTTCTCACGCATACCGGGAGCCATTGAGAGAC
TGAAACGTCGCTTTGGAGAAAACCCAGATTATAATTTTGATTTGCAAGAA
AGGCATCAGTAA
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protein sequence of Gvermi2018.t1

>Gvermi2018.t1 ID=Gvermi2018.t1|Name=Gvermi2018.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=204bp
MAFVRHWIYRTFDPNDLGAMQPLYEQSHPRAWLYGNASPFENPFQIISNA
DPKQAPLFLLTSLLLISLLNIARYGYRLQQLRAFVSSSFGRHISEDNLKA
IIRIYQSDGYHPKNISEEARRAEFYIDTIHERNATLLPAVINPERMKWSD
PPAPVQIGTPSEVFYVVHVSHTLFSRIPGAIERLKRRFGENPDYNFDLQE
RHQ*
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mRNA from alignment at ScGOVlb_1622:2736034..2736645+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2018.t1 ID=Gvermi2018.t1|Name=Gvermi2018.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=612bp|location=Sequence derived from alignment at ScGOVlb_1622:2736034..2736645+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATTCGTCAGACATTGGATATACCGCACGTTTGACCCCAATGACCT
GGGCGCCATGCAGCCGTTGTACGAGCAGTCACATCCAAGGGCATGGCTGT
ATGGCAACGCCTCTCCTTTCGAAAACCCATTTCAAATCATTTCTAATGCT
GACCCGAAACAAGCTCCTCTTTTTTTACTTACTTCTTTATTACTCATCAG
CCTACTAAACATAGCTAGGTATGGGTATAGGCTACAACAGCTCCGGGCTT
TTGTATCCTCAAGCTTCGGCCGCCACATATCCGAGGACAATCTGAAAGCA
ATTATTCGCATTTATCAATCAGATGGCTATCATCCAAAAAATATCTCAGA
GGAGGCGCGTCGCGCAGAATTTTACATTGACACTATCCACGAGCGGAACG
CTACTCTACTTCCCGCCGTCATCAATCCAGAACGAATGAAGTGGAGTGAT
CCTCCGGCGCCCGTACAGATTGGAACGCCTTCTGAGGTCTTTTACGTCGT
TCATGTTTCTCATACATTGTTCTCACGCATACCGGGAGCCATTGAGAGAC
TGAAACGTCGCTTTGGAGAAAACCCAGATTATAATTTTGATTTGCAAGAA
AGGCATCAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2736034..2736645+

>Gvermi2018.t1 ID=Gvermi2018.t1|Name=Gvermi2018.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=612bp|location=Sequence derived from alignment at ScGOVlb_1622:2736034..2736645+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATTCGTCAGACATTGGATATACCGCACGTTTGACCCCAATGACCT
GGGCGCCATGCAGCCGTTGTACGAGCAGTCACATCCAAGGGCATGGCTGT
ATGGCAACGCCTCTCCTTTCGAAAACCCATTTCAAATCATTTCTAATGCT
GACCCGAAACAAGCTCCTCTTTTTTTACTTACTTCTTTATTACTCATCAG
CCTACTAAACATAGCTAGGTATGGGTATAGGCTACAACAGCTCCGGGCTT
TTGTATCCTCAAGCTTCGGCCGCCACATATCCGAGGACAATCTGAAAGCA
ATTATTCGCATTTATCAATCAGATGGCTATCATCCAAAAAATATCTCAGA
GGAGGCGCGTCGCGCAGAATTTTACATTGACACTATCCACGAGCGGAACG
CTACTCTACTTCCCGCCGTCATCAATCCAGAACGAATGAAGTGGAGTGAT
CCTCCGGCGCCCGTACAGATTGGAACGCCTTCTGAGGTCTTTTACGTCGT
TCATGTTTCTCATACATTGTTCTCACGCATACCGGGAGCCATTGAGAGAC
TGAAACGTCGCTTTGGAGAAAACCCAGATTATAATTTTGATTTGCAAGAA
AGGCATCAGTAA
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