Gvermi14533.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi14533.t1
Unique NameGvermi14533.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2230contigScGOVlb_2230:360..1445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi14533Gvermi14533Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2230 360..1445 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14533.t1.stop1Gvermi14533.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2230 360..362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14533.t1.CDS1Gvermi14533.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2230 360..1445 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14533.t1.exon1Gvermi14533.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2230 360..1445 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14533.t1.start1Gvermi14533.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2230 1443..1445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14533.t1Gvermi14533.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2230 360..1445 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi14533.t1 ID=Gvermi14533.t1|Name=Gvermi14533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=362bp
LEAWKKSEKGNDTRRKLRKLQDSSASSDSDGDPPTENEQEDSCSDEDSNG
EQGDDSNGGHGKDSPEGEQPEESNSKQADDESTEGDDESKEGYAAEYDPW
LVCFSHGDQLDQQGETLSALARNMAIAYVYVQVLGAPEPLEWKGRGGTIP
AIKTMLKIPKGTTIEPVVRHVWACNIAGIQYNGNTMCTKKKMPRKKRGRK
RTLGPSSEEAEIIVNAIESGYSFRHAHDFVNTYLRSKQKRILTFHQVYSL
VQRLNPTSSPIGYQKQGSGDVNSTWCRARYNFTTHLLVRFGVSDGLNLTK
TRVKEDGTTEEYIPDYWNVDKVSPIKLERTAFFDETHTKCKIGGRQGTGE
TKGLQLKLLLT*
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spliced messenger RNA

>Gvermi14533.t1 ID=Gvermi14533.t1|Name=Gvermi14533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at ScGOVlb_2230:360..1445- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGAAGCATGGAAAAAGAGTGAAAAAGGAAACGACACCCGACGAAAGCT
CAGAAAGCTCCAGGACAGCTCCGCAAGCTCTGACTCTGACGGTGACCCAC
CTACTGAAAATGAGCAGGAAGATTCCTGTTCTGATGAGGACTCAAATGGA
GAGCAAGGTGATGACTCAAATGGAGGACATGGTAAAGATTCACCAGAGGG
AGAGCAACCTGAAGAATCAAACAGCAAGCAAGCAGATGATGAATCGACAG
AAGGAGATGATGAATCAAAAGAAGGATATGCAGCGGAGTATGATCCTTGG
CTGGTGTGTTTCTCCCACGGGGATCAACTTGATCAACAAGGAGAGACTCT
TTCAGCATTGGCACGGAACATGGCCATTGCATATGTTTACGTTCAGGTAC
TCGGTGCTCCTGAACCTTTGGAATGGAAGGGAAGGGGTGGAACCATCCCT
GCGATCAAAACCATGTTGAAAATTCCAAAAGGGACAACTATCGAACCAGT
GGTTCGTCATGTGTGGGCATGCAACATAGCAGGCATTCAGTACAACGGGA
ACACCATGTGTACTAAAAAGAAAATGCCAAGGAAAAAGCGGGGACGCAAA
AGGACACTCGGTCCGTCGAGCGAAGAGGCTGAGATCATTGTGAATGCGAT
CGAGAGTGGTTACAGTTTCAGACACGCACACGACTTCGTAAACACCTATT
TGAGATCGAAGCAAAAGAGAATATTGACTTTCCATCAAGTTTACTCTTTA
GTGCAACGGTTGAATCCTACATCAAGTCCTATCGGGTACCAGAAACAGGG
AAGTGGCGATGTGAACAGTACGTGGTGTCGAGCCAGGTACAATTTCACAA
CACACCTGCTTGTCAGGTTTGGAGTCAGTGATGGATTGAATCTAACAAAG
ACTAGGGTGAAAGAAGATGGAACCACCGAGGAATACATACCCGATTACTG
GAATGTTGACAAAGTGTCGCCAATAAAGCTTGAGCGAACAGCTTTTTTCG
ACGAAACACACACAAAGTGTAAGATCGGAGGGCGACAAGGGACTGGCGAA
ACGAAAGGCTTACAGCTTAAGCTGCTTTTAACGTAA
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protein sequence of Gvermi14533.t1

>Gvermi14533.t1 ID=Gvermi14533.t1|Name=Gvermi14533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=362bp
LEAWKKSEKGNDTRRKLRKLQDSSASSDSDGDPPTENEQEDSCSDEDSNG
EQGDDSNGGHGKDSPEGEQPEESNSKQADDESTEGDDESKEGYAAEYDPW
LVCFSHGDQLDQQGETLSALARNMAIAYVYVQVLGAPEPLEWKGRGGTIP
AIKTMLKIPKGTTIEPVVRHVWACNIAGIQYNGNTMCTKKKMPRKKRGRK
RTLGPSSEEAEIIVNAIESGYSFRHAHDFVNTYLRSKQKRILTFHQVYSL
VQRLNPTSSPIGYQKQGSGDVNSTWCRARYNFTTHLLVRFGVSDGLNLTK
TRVKEDGTTEEYIPDYWNVDKVSPIKLERTAFFDETHTKCKIGGRQGTGE
TKGLQLKLLLT*
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mRNA from alignment at ScGOVlb_2230:360..1445-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi14533.t1 ID=Gvermi14533.t1|Name=Gvermi14533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at ScGOVlb_2230:360..1445- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGAAGCATGGAAAAAGAGTGAAAAAGGAAACGACACCCGACGAAAGCT
CAGAAAGCTCCAGGACAGCTCCGCAAGCTCTGACTCTGACGGTGACCCAC
CTACTGAAAATGAGCAGGAAGATTCCTGTTCTGATGAGGACTCAAATGGA
GAGCAAGGTGATGACTCAAATGGAGGACATGGTAAAGATTCACCAGAGGG
AGAGCAACCTGAAGAATCAAACAGCAAGCAAGCAGATGATGAATCGACAG
AAGGAGATGATGAATCAAAAGAAGGATATGCAGCGGAGTATGATCCTTGG
CTGGTGTGTTTCTCCCACGGGGATCAACTTGATCAACAAGGAGAGACTCT
TTCAGCATTGGCACGGAACATGGCCATTGCATATGTTTACGTTCAGGTAC
TCGGTGCTCCTGAACCTTTGGAATGGAAGGGAAGGGGTGGAACCATCCCT
GCGATCAAAACCATGTTGAAAATTCCAAAAGGGACAACTATCGAACCAGT
GGTTCGTCATGTGTGGGCATGCAACATAGCAGGCATTCAGTACAACGGGA
ACACCATGTGTACTAAAAAGAAAATGCCAAGGAAAAAGCGGGGACGCAAA
AGGACACTCGGTCCGTCGAGCGAAGAGGCTGAGATCATTGTGAATGCGAT
CGAGAGTGGTTACAGTTTCAGACACGCACACGACTTCGTAAACACCTATT
TGAGATCGAAGCAAAAGAGAATATTGACTTTCCATCAAGTTTACTCTTTA
GTGCAACGGTTGAATCCTACATCAAGTCCTATCGGGTACCAGAAACAGGG
AAGTGGCGATGTGAACAGTACGTGGTGTCGAGCCAGGTACAATTTCACAA
CACACCTGCTTGTCAGGTTTGGAGTCAGTGATGGATTGAATCTAACAAAG
ACTAGGGTGAAAGAAGATGGAACCACCGAGGAATACATACCCGATTACTG
GAATGTTGACAAAGTGTCGCCAATAAAGCTTGAGCGAACAGCTTTTTTCG
ACGAAACACACACAAAGTGTAAGATCGGAGGGCGACAAGGGACTGGCGAA
ACGAAAGGCTTACAGCTTAAGCTGCTTTTAACGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2230:360..1445-

>Gvermi14533.t1 ID=Gvermi14533.t1|Name=Gvermi14533.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1086bp|location=Sequence derived from alignment at ScGOVlb_2230:360..1445- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGAAGCATGGAAAAAGAGTGAAAAAGGAAACGACACCCGACGAAAGCT
CAGAAAGCTCCAGGACAGCTCCGCAAGCTCTGACTCTGACGGTGACCCAC
CTACTGAAAATGAGCAGGAAGATTCCTGTTCTGATGAGGACTCAAATGGA
GAGCAAGGTGATGACTCAAATGGAGGACATGGTAAAGATTCACCAGAGGG
AGAGCAACCTGAAGAATCAAACAGCAAGCAAGCAGATGATGAATCGACAG
AAGGAGATGATGAATCAAAAGAAGGATATGCAGCGGAGTATGATCCTTGG
CTGGTGTGTTTCTCCCACGGGGATCAACTTGATCAACAAGGAGAGACTCT
TTCAGCATTGGCACGGAACATGGCCATTGCATATGTTTACGTTCAGGTAC
TCGGTGCTCCTGAACCTTTGGAATGGAAGGGAAGGGGTGGAACCATCCCT
GCGATCAAAACCATGTTGAAAATTCCAAAAGGGACAACTATCGAACCAGT
GGTTCGTCATGTGTGGGCATGCAACATAGCAGGCATTCAGTACAACGGGA
ACACCATGTGTACTAAAAAGAAAATGCCAAGGAAAAAGCGGGGACGCAAA
AGGACACTCGGTCCGTCGAGCGAAGAGGCTGAGATCATTGTGAATGCGAT
CGAGAGTGGTTACAGTTTCAGACACGCACACGACTTCGTAAACACCTATT
TGAGATCGAAGCAAAAGAGAATATTGACTTTCCATCAAGTTTACTCTTTA
GTGCAACGGTTGAATCCTACATCAAGTCCTATCGGGTACCAGAAACAGGG
AAGTGGCGATGTGAACAGTACGTGGTGTCGAGCCAGGTACAATTTCACAA
CACACCTGCTTGTCAGGTTTGGAGTCAGTGATGGATTGAATCTAACAAAG
ACTAGGGTGAAAGAAGATGGAACCACCGAGGAATACATACCCGATTACTG
GAATGTTGACAAAGTGTCGCCAATAAAGCTTGAGCGAACAGCTTTTTTCG
ACGAAACACACACAAAGTGTAAGATCGGAGGGCGACAAGGGACTGGCGAA
ACGAAAGGCTTACAGCTTAAGCTGCTTTTAACGTAA
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