Gvermi14131.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi14131.t1
Unique NameGvermi14131.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_6448contigScGOVlb_6448:56..787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi14131Gvermi14131Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_6448 56..787 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14131.t1.start1Gvermi14131.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_6448 56..58 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14131.t1.CDS1Gvermi14131.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_6448 56..787 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14131.t1.exon1Gvermi14131.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_6448 56..787 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14131.t1.stop1Gvermi14131.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_6448 785..787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14131.t1Gvermi14131.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_6448 56..787 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi14131.t1 ID=Gvermi14131.t1|Name=Gvermi14131.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=244bp
MDFGAALATLRNGQTVAVDVREKDILHELKLVGKRSGRRFNVLRVDQNFP
DSVDKTFKLIKNNIGAGDKNQVLRGIYEQWSGPLNTCSWSKRRYIGGGAD
EGITFDIRNPATALLDTQQAPRDKAIQRLSGNSMDRFIRIRADVEIGPRH
CWFDIFSSEAGIDTKKGNGVFYTDAYFRGVKSSPGRFYPRQYMKVNSILD
VVVVKAGTLFVADVWNGHYSYAKGVAAGRRLQNTEGAVRADLN*
back to top

spliced messenger RNA

>Gvermi14131.t1 ID=Gvermi14131.t1|Name=Gvermi14131.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=732bp|location=Sequence derived from alignment at ScGOVlb_6448:56..787+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atggactttggggcggcattggccacgctgcggaacggccaaacggtcgc
ggtggatgttcgggagaAGGACATTCTCCACGAACTGAAGCTGGTGGGAA
AGCGTTCTGGGAGACGTTTTAACGTGCTCCGCGTGGACCAGAACTTCCCG
GATAGCGTGGACAAAACATTCAAGCTGATCAAGAATAACATCGGCGCCGG
CGACAAGAATCAGGTGCTGCGCGGAATATACGAGCAGTGGAGTGGTCCTC
TCAACACATGCTCTTGGTCCAAAAGGCGTTATATCGGCGGGGGTGCCGAT
GAAGGTATCACATTTGATATCCGAAACCCAGCAACCGCTTTGCTTGACAC
ACAACAAGCACCGCGGGACAAAGCGATCCAGAGGCTGTCCGGAAACAGCA
TGGATCGATTCATTCGCATAAGAGCGGATGTGGAAATCGGTCCCAGGCAT
TGTTGGTTTGACATATTCTCAAGCGAGGCTGGAATCGACACGAAGAAGGG
TAACGGCGTGTTTTACACGGATGCGTATTTTAGGGGGGTGAAGAGCTCGC
CTGGGAGGTTCTACCCACGTCAGTATATGAAAGTGAACAGTATTCTGGAC
GTTGTGGTTGTGAAGGCGGGAACGTTGTTTGTGGCGGACGTGTGGAATGG
GCACTATTCGTACGCGAAAGGAGTGGCTGCAGGGCGGCGCTTGcagaaca
ccgagggcgccgtccgcgccgacttgaactga
back to top

protein sequence of Gvermi14131.t1

>Gvermi14131.t1 ID=Gvermi14131.t1|Name=Gvermi14131.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=244bp
MDFGAALATLRNGQTVAVDVREKDILHELKLVGKRSGRRFNVLRVDQNFP
DSVDKTFKLIKNNIGAGDKNQVLRGIYEQWSGPLNTCSWSKRRYIGGGAD
EGITFDIRNPATALLDTQQAPRDKAIQRLSGNSMDRFIRIRADVEIGPRH
CWFDIFSSEAGIDTKKGNGVFYTDAYFRGVKSSPGRFYPRQYMKVNSILD
VVVVKAGTLFVADVWNGHYSYAKGVAAGRRLQNTEGAVRADLN*
back to top

mRNA from alignment at ScGOVlb_6448:56..787+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi14131.t1 ID=Gvermi14131.t1|Name=Gvermi14131.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=732bp|location=Sequence derived from alignment at ScGOVlb_6448:56..787+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggactttggggcggcattggccacgctgcggaacggccaaacggtcgc
ggtggatgttcgggagaAGGACATTCTCCACGAACTGAAGCTGGTGGGAA
AGCGTTCTGGGAGACGTTTTAACGTGCTCCGCGTGGACCAGAACTTCCCG
GATAGCGTGGACAAAACATTCAAGCTGATCAAGAATAACATCGGCGCCGG
CGACAAGAATCAGGTGCTGCGCGGAATATACGAGCAGTGGAGTGGTCCTC
TCAACACATGCTCTTGGTCCAAAAGGCGTTATATCGGCGGGGGTGCCGAT
GAAGGTATCACATTTGATATCCGAAACCCAGCAACCGCTTTGCTTGACAC
ACAACAAGCACCGCGGGACAAAGCGATCCAGAGGCTGTCCGGAAACAGCA
TGGATCGATTCATTCGCATAAGAGCGGATGTGGAAATCGGTCCCAGGCAT
TGTTGGTTTGACATATTCTCAAGCGAGGCTGGAATCGACACGAAGAAGGG
TAACGGCGTGTTTTACACGGATGCGTATTTTAGGGGGGTGAAGAGCTCGC
CTGGGAGGTTCTACCCACGTCAGTATATGAAAGTGAACAGTATTCTGGAC
GTTGTGGTTGTGAAGGCGGGAACGTTGTTTGTGGCGGACGTGTGGAATGG
GCACTATTCGTACGCGAAAGGAGTGGCTGCAGGGCGGCGCTTGcagaaca
ccgagggcgccgtccgcgccgacttgaactga
back to top

Coding sequence (CDS) from alignment at ScGOVlb_6448:56..787+

>Gvermi14131.t1 ID=Gvermi14131.t1|Name=Gvermi14131.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=732bp|location=Sequence derived from alignment at ScGOVlb_6448:56..787+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggactttggggcggcattggccacgctgcggaacggccaaacggtcgc
ggtggatgttcgggagaAGGACATTCTCCACGAACTGAAGCTGGTGGGAA
AGCGTTCTGGGAGACGTTTTAACGTGCTCCGCGTGGACCAGAACTTCCCG
GATAGCGTGGACAAAACATTCAAGCTGATCAAGAATAACATCGGCGCCGG
CGACAAGAATCAGGTGCTGCGCGGAATATACGAGCAGTGGAGTGGTCCTC
TCAACACATGCTCTTGGTCCAAAAGGCGTTATATCGGCGGGGGTGCCGAT
GAAGGTATCACATTTGATATCCGAAACCCAGCAACCGCTTTGCTTGACAC
ACAACAAGCACCGCGGGACAAAGCGATCCAGAGGCTGTCCGGAAACAGCA
TGGATCGATTCATTCGCATAAGAGCGGATGTGGAAATCGGTCCCAGGCAT
TGTTGGTTTGACATATTCTCAAGCGAGGCTGGAATCGACACGAAGAAGGG
TAACGGCGTGTTTTACACGGATGCGTATTTTAGGGGGGTGAAGAGCTCGC
CTGGGAGGTTCTACCCACGTCAGTATATGAAAGTGAACAGTATTCTGGAC
GTTGTGGTTGTGAAGGCGGGAACGTTGTTTGTGGCGGACGTGTGGAATGG
GCACTATTCGTACGCGAAAGGAGTGGCTGCAGGGCGGCGCTTGcagaaca
ccgagggcgccgtccgcgccgacttgaactga
back to top