Gvermi13980.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13980.t1
Unique Name	Gvermi13980.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	356

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_647	contig	ScGOVlb_647:1381571..1382638 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705591.1
PFAMs	PHM7_cyt,RSN1_7TM,RSN1_TM
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K21989
Evalue	3.8e-29
EggNOG OGs	COG5594@1\|root,KOG1134@2759\|Eukaryota
Description	ion transport
COG category	I
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13980	Gvermi13980	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_647 1381571..1382638 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13980.t1.start1	Gvermi13980.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_647 1381571..1381573 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13980.t1.CDS1	Gvermi13980.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_647 1381571..1382638 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13980.t1.exon1	Gvermi13980.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_647 1381571..1382638 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13980.t1.stop1	Gvermi13980.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_647 1382636..1382638 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13980.t1	Gvermi13980.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_647 1381571..1382638 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_647:1381571..1382638+
coding sequence from alignment at ScGOVlb_647:1381571..1382638+

mRNA sequence

>Gvermi13980.t1 ID=Gvermi13980.t1|Name=Gvermi13980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=356bp
MAIFWTVPATSIQALNNLQELADRWPESFLTSFIENNPGFARFLQGILPP
LILYVLLLIVPLVIRLVVNFERIHSRVLLEAKIRNFIFFFYIMSNFFYVV
VIGSVFQKLKDLFENPTQIVAILSVSVPAQSTFLMKYVLINAFLGSTLNL
LNIGRIIVRPFLLLRAKTDRERRNSDEIFSQYPFAKIYALCCMVSLISFV
YSTIAPVICAVATLYYSIAYLCHKQQLLYSHKPQFEGGGYMFRDAWTGLL
VGLYFHQLSMIGIFGLKVATPQAILSVFSLLVSIWFHNYCRKTLLFRAKH
GSLIDQAEMDDEEGLRDEIPEHFAELYLHPGLRSVDVIKDDELAGISYES
KPAAA*

spliced messenger RNA

>Gvermi13980.t1 ID=Gvermi13980.t1|Name=Gvermi13980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at ScGOVlb_647:1381571..1382638+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATCTTCTGGACCGTCCCGGCCACCTCCATCCAGGCGCTCAACAA
CCTGCAGGAGCTCGCGGACAGGTGGCCAGAGTCCTTCCTCACGTCGTTCA
TCGAGAACAACCCCGGCTTTGCGCGCTTCCTGCAGGGCATTCTGCCGCCG
CTCATTCTGTACGTGCTGCTGCTCATCGTGCCGCTCGTCATCCGCCTCGT
CGTCAACTTTGAGCGCATCCACAGCCGCGTGCTGCTGGAGGCCAAGATCC
GCAACTTCATCTTCTTTTTCTACATCATGTCCAACTTTTTCTACGTCGTC
GTCATCGGCTCGGTGTTCCAAAAGCTCAAGGATCTGTTTGAAAACCCCAC
GCAGATCGTGGCCATCCTGTCCGTGTCCGTGCCGGCGCAGTCCACGTTCC
TCATGAAGTACGTGCTCATCAACGCCTTTCTGGGCAGCACGCTCAACCTG
CTCAACATCGGCCGCATCATTGTGCGCCCGTTCCTGCTGCTGCGCGCCAA
GACCGACCGCGAGCGGCGCAACTCGGACGAGATCTTCTCGCAGTACCCGT
TCGCCAAGATTTACGCGCTGTGCTGCATGGTGTCGCTCATTTCGTTTGTG
TACAGCACGATTGCGCCCGTCATCTGTGCCGTGGCCACGCTCTACTACTC
CATTGCGTACCTGTGCCACAAGCAGCAGCTGCTCTACTCGCACAAGCCGC
AGTTTGAAGGCGGCGGCTACATGTTTCGCGACGCGTGGACTGGCCTGTTG
GTCGGCCTCTACTTTCACCAGCTGTCCATGATCGGCATTTTCGGGTTGAA
GGTGGCCACCCCGCAGGCCATTCTATCTGTGTTTTCGCTGTTGGTCTCTA
TCTGGTTTCACAACTACTGCCGGAAAACGTTGCTTTTTCGAGCCAAGCAC
GGCAGCTTAATTGACCAGGCCGAGATGGACGATGAGGAGGGCCTTCGTGA
CGAGATTCCCGAGCACTTTGCCGAGCTGTACTTGCATCCCGGCCTCAGAT
CCGTCGACGTCATCAAGGACGATGAGCTCGCCGGGATCAGCTACGAGAGC
AAGCCCGCAGCGGCCTAA

protein sequence of Gvermi13980.t1

>Gvermi13980.t1 ID=Gvermi13980.t1|Name=Gvermi13980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=356bp
MAIFWTVPATSIQALNNLQELADRWPESFLTSFIENNPGFARFLQGILPP
LILYVLLLIVPLVIRLVVNFERIHSRVLLEAKIRNFIFFFYIMSNFFYVV
VIGSVFQKLKDLFENPTQIVAILSVSVPAQSTFLMKYVLINAFLGSTLNL
LNIGRIIVRPFLLLRAKTDRERRNSDEIFSQYPFAKIYALCCMVSLISFV
YSTIAPVICAVATLYYSIAYLCHKQQLLYSHKPQFEGGGYMFRDAWTGLL
VGLYFHQLSMIGIFGLKVATPQAILSVFSLLVSIWFHNYCRKTLLFRAKH
GSLIDQAEMDDEEGLRDEIPEHFAELYLHPGLRSVDVIKDDELAGISYES
KPAAA*

mRNA from alignment at ScGOVlb_647:1381571..1382638+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13980.t1 ID=Gvermi13980.t1|Name=Gvermi13980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at ScGOVlb_647:1381571..1382638+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCATCTTCTGGACCGTCCCGGCCACCTCCATCCAGGCGCTCAACAA
CCTGCAGGAGCTCGCGGACAGGTGGCCAGAGTCCTTCCTCACGTCGTTCA
TCGAGAACAACCCCGGCTTTGCGCGCTTCCTGCAGGGCATTCTGCCGCCG
CTCATTCTGTACGTGCTGCTGCTCATCGTGCCGCTCGTCATCCGCCTCGT
CGTCAACTTTGAGCGCATCCACAGCCGCGTGCTGCTGGAGGCCAAGATCC
GCAACTTCATCTTCTTTTTCTACATCATGTCCAACTTTTTCTACGTCGTC
GTCATCGGCTCGGTGTTCCAAAAGCTCAAGGATCTGTTTGAAAACCCCAC
GCAGATCGTGGCCATCCTGTCCGTGTCCGTGCCGGCGCAGTCCACGTTCC
TCATGAAGTACGTGCTCATCAACGCCTTTCTGGGCAGCACGCTCAACCTG
CTCAACATCGGCCGCATCATTGTGCGCCCGTTCCTGCTGCTGCGCGCCAA
GACCGACCGCGAGCGGCGCAACTCGGACGAGATCTTCTCGCAGTACCCGT
TCGCCAAGATTTACGCGCTGTGCTGCATGGTGTCGCTCATTTCGTTTGTG
TACAGCACGATTGCGCCCGTCATCTGTGCCGTGGCCACGCTCTACTACTC
CATTGCGTACCTGTGCCACAAGCAGCAGCTGCTCTACTCGCACAAGCCGC
AGTTTGAAGGCGGCGGCTACATGTTTCGCGACGCGTGGACTGGCCTGTTG
GTCGGCCTCTACTTTCACCAGCTGTCCATGATCGGCATTTTCGGGTTGAA
GGTGGCCACCCCGCAGGCCATTCTATCTGTGTTTTCGCTGTTGGTCTCTA
TCTGGTTTCACAACTACTGCCGGAAAACGTTGCTTTTTCGAGCCAAGCAC
GGCAGCTTAATTGACCAGGCCGAGATGGACGATGAGGAGGGCCTTCGTGA
CGAGATTCCCGAGCACTTTGCCGAGCTGTACTTGCATCCCGGCCTCAGAT
CCGTCGACGTCATCAAGGACGATGAGCTCGCCGGGATCAGCTACGAGAGC
AAGCCCGCAGCGGCCTAA

Coding sequence (CDS) from alignment at ScGOVlb_647:1381571..1382638+

>Gvermi13980.t1 ID=Gvermi13980.t1|Name=Gvermi13980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1068bp|location=Sequence derived from alignment at ScGOVlb_647:1381571..1382638+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCATCTTCTGGACCGTCCCGGCCACCTCCATCCAGGCGCTCAACAA
CCTGCAGGAGCTCGCGGACAGGTGGCCAGAGTCCTTCCTCACGTCGTTCA
TCGAGAACAACCCCGGCTTTGCGCGCTTCCTGCAGGGCATTCTGCCGCCG
CTCATTCTGTACGTGCTGCTGCTCATCGTGCCGCTCGTCATCCGCCTCGT
CGTCAACTTTGAGCGCATCCACAGCCGCGTGCTGCTGGAGGCCAAGATCC
GCAACTTCATCTTCTTTTTCTACATCATGTCCAACTTTTTCTACGTCGTC
GTCATCGGCTCGGTGTTCCAAAAGCTCAAGGATCTGTTTGAAAACCCCAC
GCAGATCGTGGCCATCCTGTCCGTGTCCGTGCCGGCGCAGTCCACGTTCC
TCATGAAGTACGTGCTCATCAACGCCTTTCTGGGCAGCACGCTCAACCTG
CTCAACATCGGCCGCATCATTGTGCGCCCGTTCCTGCTGCTGCGCGCCAA
GACCGACCGCGAGCGGCGCAACTCGGACGAGATCTTCTCGCAGTACCCGT
TCGCCAAGATTTACGCGCTGTGCTGCATGGTGTCGCTCATTTCGTTTGTG
TACAGCACGATTGCGCCCGTCATCTGTGCCGTGGCCACGCTCTACTACTC
CATTGCGTACCTGTGCCACAAGCAGCAGCTGCTCTACTCGCACAAGCCGC
AGTTTGAAGGCGGCGGCTACATGTTTCGCGACGCGTGGACTGGCCTGTTG
GTCGGCCTCTACTTTCACCAGCTGTCCATGATCGGCATTTTCGGGTTGAA
GGTGGCCACCCCGCAGGCCATTCTATCTGTGTTTTCGCTGTTGGTCTCTA
TCTGGTTTCACAACTACTGCCGGAAAACGTTGCTTTTTCGAGCCAAGCAC
GGCAGCTTAATTGACCAGGCCGAGATGGACGATGAGGAGGGCCTTCGTGA
CGAGATTCCCGAGCACTTTGCCGAGCTGTACTTGCATCCCGGCCTCAGAT
CCGTCGACGTCATCAAGGACGATGAGCTCGCCGGGATCAGCTACGAGAGC
AAGCCCGCAGCGGCCTAA