Gvermi13966.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13966.t1
Unique Name	Gvermi13966.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	518

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_647	contig	ScGOVlb_647:1171630..1173183 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13037.EHJ69829
Preferred name	SETD3
PFAMs	Rubis-subs-bind,SET
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00003,RC00060,RC00181,RC00496
KEGG ko	ko:K19199
KEGG Reaction	R03875,R04866,R04867
KEGG Pathway	ko00310,map00310
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0001085,GO:0001102,GO:0001558,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008283,GO:0008757,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010452,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018026,GO:0018027,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0033613,GO:0034968,GO:0036211,GO:0040008,GO:0042054,GO:0042800,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045893,GO:0045935,GO:0045944,GO:0046975,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051147,GO:0051149,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue	8.36e-45
EggNOG OGs	KOG1337@1\|root,KOG1337@2759\|Eukaryota,38GWP@33154\|Opisthokonta,3BDB6@33208\|Metazoa,3CXWT@33213\|Bilateria,41XYW@6656\|Arthropoda,3SJUH@50557\|Insecta,446JM@7088\|Lepidoptera
EC	2.1.1.43
Description	Histone-lysine N-methyltransferase setd3-like
COG category	S
BRITE	ko00000,ko00001,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13966	Gvermi13966	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_647 1171630..1173183 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13966.t1.start1	Gvermi13966.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_647 1171630..1171632 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13966.t1.CDS1	Gvermi13966.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_647 1171630..1173183 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13966.t1.exon1	Gvermi13966.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_647 1171630..1173183 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13966.t1.stop1	Gvermi13966.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_647 1173181..1173183 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13966.t1	Gvermi13966.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_647 1171630..1173183 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_647:1171630..1173183+
coding sequence from alignment at ScGOVlb_647:1171630..1173183+

mRNA sequence

>Gvermi13966.t1 ID=Gvermi13966.t1|Name=Gvermi13966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=518bp
MPKTRVRSKAAGRKLSSKHSKTFKASPAILKAVESLQRFVEDHHRWAAED
ESLLLQQLQQMLLNLQKLQNAEQQSVIPKRTSHSFTAFTAWLSANGVNLD
DAPFRIDFTPGTDTNDATLFATRLINADELIMSIPSSVMLTATNSPIKAL
EVQMPALATMPSLSLGLYLLHEASNPNSSFKPYIDILPSTFTTPFANFTP
QHLLSLRPSHASGAAIKSLRAQVRNYTYIYRTVSSQRVPVISPRVLTFSN
FVWALSVVMTRQNALPSTDPPTLALVPLWDLCNHEPGHFTTQVLVDTTVT
VECSAMRTFQSGEPITIFYGARPNVKLLLFSGFVQPNNAYDTLPVSLTIS
REEQLAPLKARALAKLGFDVQANVDENEPEQQNGHKGWSCAVGIGRGIVA
EALAVARVLAMDKPAFTDWLKRGASLPERAAVEPDIEADARRRVADVVRE
QLKLYPPLEDVTNEMRKSSSEMSPEVYQLLLSEKKLLEVDLDILENPNYD
QDESVEVEGVQRCGCCH*

spliced messenger RNA

>Gvermi13966.t1 ID=Gvermi13966.t1|Name=Gvermi13966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at ScGOVlb_647:1171630..1173183+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAAAACCAGAGTTCGTTCCAAGGCTGCGGGGCGAAAATTGTCATC
CAAGCATTCCAAAACATTCAAGGCCTCCCCAGCTATTCTTAAAGCCGTGG
AATCGCTCCAGCGTTTCGTCGAGGATCACCATCGGTGGGCGGCTGAAGAT
GAAAGTCTGCTTCTCCAACAACTTCAACAGATGCTTTTGAATCTGCAAAA
GCTGCAGAACGCAGAACAACAAAGCGTCATTCCGAAAAGAACCTCACACA
GTTTTACGGCTTTCACCGCTTGGTTATCCGCCAACGGCGTCAATCTTGAT
GACGCTCCGTTTCGGATTGACTTCACCCCAGGCACCGACACAAACGATGC
AACTTTGTTTGCCACACGATTGATCAACGCCGATGAGCTCATCATGTCAA
TCCCGTCTTCAGTCATGCTCACAGCCACCAATTCCCCAATCAAGGCATTG
GAAGTTCAAATGCCGGCCCTCGCCACCATGCCATCTCTGTCACTGGGCTT
GTACCTTTTGCATGAAGCATCCAACCCCAATAGTAGTTTCAAGCCATACA
TTGATATTCTTCCCAGCACGTTCACCACCCCATTTGCTAACTTCACTCCG
CAACATTTGCTCTCATTGCGACCGTCCCACGCTTCTGGCGCCGCGATAAA
GTCACTTCGTGCCCAGGTCCGCAACTACACTTACATCTATCGCACCGTAT
CCTCACAGCGAGTACCGGTCATTTCACCTCGGGTTCTCACGTTTTCCAAC
TTTGTATGGGCTCTTTCTGTCGTTATGACTCGCCAGAACGCCTTGCCGTC
TACGGACCCACCTACGCTGGCGCTCGTACCCCTCTGGGATCTTTGCAACC
ACGAGCCCGGTCATTTTACAACCCAAGTCTTGGTGGATACCACAGTGACT
GTCGAATGCTCGGCGATGAGGACATTCCAATCTGGAGAACCAATTACCAT
ATTCTACGGTGCAAGGCCAAATGTCAAACTTCTTTTGTTTTCTGGGTTCG
TTCAACCAAACAATGCCTATGATACGCTTCCTGTGTCGTTAACGATATCT
CGCGAAGAGCAGCTCGCACCCTTGAAAGCAAGGGCTCTTGCAAAGCTGGG
CTTTGATGTGCAGGCCAATGTCGACGAAAATGAGCCTGAGCAACAGAATG
GTCACAAAGGCTGGTCGTGTGCTGTCGGGATAGGCAGGGGAATTGTTGCA
GAAGCATTGGCTGTAGCCAGGGTGCTTGCCATGGACAAACCTGCCTTCAC
TGACTGGCTGAAAAGAGGAGCGTCCTTACCAGAGCGCGCCGCGGTTGAGC
CTGACATTGAAGCAGATGCGAGAAGAAGAGTCGCAGATGTTGTGCGGGAA
CAATTAAAACTGTATCCCCCCCTCGAGGATGTGACCAACGAAATGAGAAA
GAGCTCATCAGAGATGAGCCCGGAAGTGTACCAATTGCTTTTAAGTGAGA
AGAAGTTGCTTGAAGTCGACTTGGACATCTTGGAGAATCCAAATTACGAC
CAAGACGAATCTGTCGAAGTTGAGGGCGTTCAGCGTTGTGGTTGTTGTCA
CTAA

protein sequence of Gvermi13966.t1

>Gvermi13966.t1 ID=Gvermi13966.t1|Name=Gvermi13966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=518bp
MPKTRVRSKAAGRKLSSKHSKTFKASPAILKAVESLQRFVEDHHRWAAED
ESLLLQQLQQMLLNLQKLQNAEQQSVIPKRTSHSFTAFTAWLSANGVNLD
DAPFRIDFTPGTDTNDATLFATRLINADELIMSIPSSVMLTATNSPIKAL
EVQMPALATMPSLSLGLYLLHEASNPNSSFKPYIDILPSTFTTPFANFTP
QHLLSLRPSHASGAAIKSLRAQVRNYTYIYRTVSSQRVPVISPRVLTFSN
FVWALSVVMTRQNALPSTDPPTLALVPLWDLCNHEPGHFTTQVLVDTTVT
VECSAMRTFQSGEPITIFYGARPNVKLLLFSGFVQPNNAYDTLPVSLTIS
REEQLAPLKARALAKLGFDVQANVDENEPEQQNGHKGWSCAVGIGRGIVA
EALAVARVLAMDKPAFTDWLKRGASLPERAAVEPDIEADARRRVADVVRE
QLKLYPPLEDVTNEMRKSSSEMSPEVYQLLLSEKKLLEVDLDILENPNYD
QDESVEVEGVQRCGCCH*

mRNA from alignment at ScGOVlb_647:1171630..1173183+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13966.t1 ID=Gvermi13966.t1|Name=Gvermi13966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at ScGOVlb_647:1171630..1173183+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCAAAACCAGAGTTCGTTCCAAGGCTGCGGGGCGAAAATTGTCATC
CAAGCATTCCAAAACATTCAAGGCCTCCCCAGCTATTCTTAAAGCCGTGG
AATCGCTCCAGCGTTTCGTCGAGGATCACCATCGGTGGGCGGCTGAAGAT
GAAAGTCTGCTTCTCCAACAACTTCAACAGATGCTTTTGAATCTGCAAAA
GCTGCAGAACGCAGAACAACAAAGCGTCATTCCGAAAAGAACCTCACACA
GTTTTACGGCTTTCACCGCTTGGTTATCCGCCAACGGCGTCAATCTTGAT
GACGCTCCGTTTCGGATTGACTTCACCCCAGGCACCGACACAAACGATGC
AACTTTGTTTGCCACACGATTGATCAACGCCGATGAGCTCATCATGTCAA
TCCCGTCTTCAGTCATGCTCACAGCCACCAATTCCCCAATCAAGGCATTG
GAAGTTCAAATGCCGGCCCTCGCCACCATGCCATCTCTGTCACTGGGCTT
GTACCTTTTGCATGAAGCATCCAACCCCAATAGTAGTTTCAAGCCATACA
TTGATATTCTTCCCAGCACGTTCACCACCCCATTTGCTAACTTCACTCCG
CAACATTTGCTCTCATTGCGACCGTCCCACGCTTCTGGCGCCGCGATAAA
GTCACTTCGTGCCCAGGTCCGCAACTACACTTACATCTATCGCACCGTAT
CCTCACAGCGAGTACCGGTCATTTCACCTCGGGTTCTCACGTTTTCCAAC
TTTGTATGGGCTCTTTCTGTCGTTATGACTCGCCAGAACGCCTTGCCGTC
TACGGACCCACCTACGCTGGCGCTCGTACCCCTCTGGGATCTTTGCAACC
ACGAGCCCGGTCATTTTACAACCCAAGTCTTGGTGGATACCACAGTGACT
GTCGAATGCTCGGCGATGAGGACATTCCAATCTGGAGAACCAATTACCAT
ATTCTACGGTGCAAGGCCAAATGTCAAACTTCTTTTGTTTTCTGGGTTCG
TTCAACCAAACAATGCCTATGATACGCTTCCTGTGTCGTTAACGATATCT
CGCGAAGAGCAGCTCGCACCCTTGAAAGCAAGGGCTCTTGCAAAGCTGGG
CTTTGATGTGCAGGCCAATGTCGACGAAAATGAGCCTGAGCAACAGAATG
GTCACAAAGGCTGGTCGTGTGCTGTCGGGATAGGCAGGGGAATTGTTGCA
GAAGCATTGGCTGTAGCCAGGGTGCTTGCCATGGACAAACCTGCCTTCAC
TGACTGGCTGAAAAGAGGAGCGTCCTTACCAGAGCGCGCCGCGGTTGAGC
CTGACATTGAAGCAGATGCGAGAAGAAGAGTCGCAGATGTTGTGCGGGAA
CAATTAAAACTGTATCCCCCCCTCGAGGATGTGACCAACGAAATGAGAAA
GAGCTCATCAGAGATGAGCCCGGAAGTGTACCAATTGCTTTTAAGTGAGA
AGAAGTTGCTTGAAGTCGACTTGGACATCTTGGAGAATCCAAATTACGAC
CAAGACGAATCTGTCGAAGTTGAGGGCGTTCAGCGTTGTGGTTGTTGTCA
CTAA

Coding sequence (CDS) from alignment at ScGOVlb_647:1171630..1173183+

>Gvermi13966.t1 ID=Gvermi13966.t1|Name=Gvermi13966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1554bp|location=Sequence derived from alignment at ScGOVlb_647:1171630..1173183+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCAAAACCAGAGTTCGTTCCAAGGCTGCGGGGCGAAAATTGTCATC
CAAGCATTCCAAAACATTCAAGGCCTCCCCAGCTATTCTTAAAGCCGTGG
AATCGCTCCAGCGTTTCGTCGAGGATCACCATCGGTGGGCGGCTGAAGAT
GAAAGTCTGCTTCTCCAACAACTTCAACAGATGCTTTTGAATCTGCAAAA
GCTGCAGAACGCAGAACAACAAAGCGTCATTCCGAAAAGAACCTCACACA
GTTTTACGGCTTTCACCGCTTGGTTATCCGCCAACGGCGTCAATCTTGAT
GACGCTCCGTTTCGGATTGACTTCACCCCAGGCACCGACACAAACGATGC
AACTTTGTTTGCCACACGATTGATCAACGCCGATGAGCTCATCATGTCAA
TCCCGTCTTCAGTCATGCTCACAGCCACCAATTCCCCAATCAAGGCATTG
GAAGTTCAAATGCCGGCCCTCGCCACCATGCCATCTCTGTCACTGGGCTT
GTACCTTTTGCATGAAGCATCCAACCCCAATAGTAGTTTCAAGCCATACA
TTGATATTCTTCCCAGCACGTTCACCACCCCATTTGCTAACTTCACTCCG
CAACATTTGCTCTCATTGCGACCGTCCCACGCTTCTGGCGCCGCGATAAA
GTCACTTCGTGCCCAGGTCCGCAACTACACTTACATCTATCGCACCGTAT
CCTCACAGCGAGTACCGGTCATTTCACCTCGGGTTCTCACGTTTTCCAAC
TTTGTATGGGCTCTTTCTGTCGTTATGACTCGCCAGAACGCCTTGCCGTC
TACGGACCCACCTACGCTGGCGCTCGTACCCCTCTGGGATCTTTGCAACC
ACGAGCCCGGTCATTTTACAACCCAAGTCTTGGTGGATACCACAGTGACT
GTCGAATGCTCGGCGATGAGGACATTCCAATCTGGAGAACCAATTACCAT
ATTCTACGGTGCAAGGCCAAATGTCAAACTTCTTTTGTTTTCTGGGTTCG
TTCAACCAAACAATGCCTATGATACGCTTCCTGTGTCGTTAACGATATCT
CGCGAAGAGCAGCTCGCACCCTTGAAAGCAAGGGCTCTTGCAAAGCTGGG
CTTTGATGTGCAGGCCAATGTCGACGAAAATGAGCCTGAGCAACAGAATG
GTCACAAAGGCTGGTCGTGTGCTGTCGGGATAGGCAGGGGAATTGTTGCA
GAAGCATTGGCTGTAGCCAGGGTGCTTGCCATGGACAAACCTGCCTTCAC
TGACTGGCTGAAAAGAGGAGCGTCCTTACCAGAGCGCGCCGCGGTTGAGC
CTGACATTGAAGCAGATGCGAGAAGAAGAGTCGCAGATGTTGTGCGGGAA
CAATTAAAACTGTATCCCCCCCTCGAGGATGTGACCAACGAAATGAGAAA
GAGCTCATCAGAGATGAGCCCGGAAGTGTACCAATTGCTTTTAAGTGAGA
AGAAGTTGCTTGAAGTCGACTTGGACATCTTGGAGAATCCAAATTACGAC
CAAGACGAATCTGTCGAAGTTGAGGGCGTTCAGCGTTGTGGTTGTTGTCA
CTAA