Gvermi13966.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13966.t1
Unique NameGvermi13966.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length518
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1171630..1173183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13037.EHJ69829
Preferred nameSETD3
PFAMsRubis-subs-bind,SET
Max annot lvl33208|Metazoa
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
GOsGO:0000228,GO:0000785,GO:0000790,GO:0001085,GO:0001102,GO:0001558,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008283,GO:0008757,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010452,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018026,GO:0018027,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0033613,GO:0034968,GO:0036211,GO:0040008,GO:0042054,GO:0042800,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045893,GO:0045935,GO:0045944,GO:0046975,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051147,GO:0051149,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue8.36e-45
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota,38GWP@33154|Opisthokonta,3BDB6@33208|Metazoa,3CXWT@33213|Bilateria,41XYW@6656|Arthropoda,3SJUH@50557|Insecta,446JM@7088|Lepidoptera
EC2.1.1.43
DescriptionHistone-lysine N-methyltransferase setd3-like
COG categoryS
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13966Gvermi13966Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1171630..1173183 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13966.t1.start1Gvermi13966.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1171630..1171632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13966.t1.CDS1Gvermi13966.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1171630..1173183 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13966.t1.exon1Gvermi13966.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1171630..1173183 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13966.t1.stop1Gvermi13966.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1173181..1173183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13966.t1Gvermi13966.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1171630..1173183 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13966.t1 ID=Gvermi13966.t1|Name=Gvermi13966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=518bp
MPKTRVRSKAAGRKLSSKHSKTFKASPAILKAVESLQRFVEDHHRWAAED
ESLLLQQLQQMLLNLQKLQNAEQQSVIPKRTSHSFTAFTAWLSANGVNLD
DAPFRIDFTPGTDTNDATLFATRLINADELIMSIPSSVMLTATNSPIKAL
EVQMPALATMPSLSLGLYLLHEASNPNSSFKPYIDILPSTFTTPFANFTP
QHLLSLRPSHASGAAIKSLRAQVRNYTYIYRTVSSQRVPVISPRVLTFSN
FVWALSVVMTRQNALPSTDPPTLALVPLWDLCNHEPGHFTTQVLVDTTVT
VECSAMRTFQSGEPITIFYGARPNVKLLLFSGFVQPNNAYDTLPVSLTIS
REEQLAPLKARALAKLGFDVQANVDENEPEQQNGHKGWSCAVGIGRGIVA
EALAVARVLAMDKPAFTDWLKRGASLPERAAVEPDIEADARRRVADVVRE
QLKLYPPLEDVTNEMRKSSSEMSPEVYQLLLSEKKLLEVDLDILENPNYD
QDESVEVEGVQRCGCCH*
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spliced messenger RNA

>Gvermi13966.t1 ID=Gvermi13966.t1|Name=Gvermi13966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at ScGOVlb_647:1171630..1173183+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAAAACCAGAGTTCGTTCCAAGGCTGCGGGGCGAAAATTGTCATC
CAAGCATTCCAAAACATTCAAGGCCTCCCCAGCTATTCTTAAAGCCGTGG
AATCGCTCCAGCGTTTCGTCGAGGATCACCATCGGTGGGCGGCTGAAGAT
GAAAGTCTGCTTCTCCAACAACTTCAACAGATGCTTTTGAATCTGCAAAA
GCTGCAGAACGCAGAACAACAAAGCGTCATTCCGAAAAGAACCTCACACA
GTTTTACGGCTTTCACCGCTTGGTTATCCGCCAACGGCGTCAATCTTGAT
GACGCTCCGTTTCGGATTGACTTCACCCCAGGCACCGACACAAACGATGC
AACTTTGTTTGCCACACGATTGATCAACGCCGATGAGCTCATCATGTCAA
TCCCGTCTTCAGTCATGCTCACAGCCACCAATTCCCCAATCAAGGCATTG
GAAGTTCAAATGCCGGCCCTCGCCACCATGCCATCTCTGTCACTGGGCTT
GTACCTTTTGCATGAAGCATCCAACCCCAATAGTAGTTTCAAGCCATACA
TTGATATTCTTCCCAGCACGTTCACCACCCCATTTGCTAACTTCACTCCG
CAACATTTGCTCTCATTGCGACCGTCCCACGCTTCTGGCGCCGCGATAAA
GTCACTTCGTGCCCAGGTCCGCAACTACACTTACATCTATCGCACCGTAT
CCTCACAGCGAGTACCGGTCATTTCACCTCGGGTTCTCACGTTTTCCAAC
TTTGTATGGGCTCTTTCTGTCGTTATGACTCGCCAGAACGCCTTGCCGTC
TACGGACCCACCTACGCTGGCGCTCGTACCCCTCTGGGATCTTTGCAACC
ACGAGCCCGGTCATTTTACAACCCAAGTCTTGGTGGATACCACAGTGACT
GTCGAATGCTCGGCGATGAGGACATTCCAATCTGGAGAACCAATTACCAT
ATTCTACGGTGCAAGGCCAAATGTCAAACTTCTTTTGTTTTCTGGGTTCG
TTCAACCAAACAATGCCTATGATACGCTTCCTGTGTCGTTAACGATATCT
CGCGAAGAGCAGCTCGCACCCTTGAAAGCAAGGGCTCTTGCAAAGCTGGG
CTTTGATGTGCAGGCCAATGTCGACGAAAATGAGCCTGAGCAACAGAATG
GTCACAAAGGCTGGTCGTGTGCTGTCGGGATAGGCAGGGGAATTGTTGCA
GAAGCATTGGCTGTAGCCAGGGTGCTTGCCATGGACAAACCTGCCTTCAC
TGACTGGCTGAAAAGAGGAGCGTCCTTACCAGAGCGCGCCGCGGTTGAGC
CTGACATTGAAGCAGATGCGAGAAGAAGAGTCGCAGATGTTGTGCGGGAA
CAATTAAAACTGTATCCCCCCCTCGAGGATGTGACCAACGAAATGAGAAA
GAGCTCATCAGAGATGAGCCCGGAAGTGTACCAATTGCTTTTAAGTGAGA
AGAAGTTGCTTGAAGTCGACTTGGACATCTTGGAGAATCCAAATTACGAC
CAAGACGAATCTGTCGAAGTTGAGGGCGTTCAGCGTTGTGGTTGTTGTCA
CTAA
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protein sequence of Gvermi13966.t1

>Gvermi13966.t1 ID=Gvermi13966.t1|Name=Gvermi13966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=518bp
MPKTRVRSKAAGRKLSSKHSKTFKASPAILKAVESLQRFVEDHHRWAAED
ESLLLQQLQQMLLNLQKLQNAEQQSVIPKRTSHSFTAFTAWLSANGVNLD
DAPFRIDFTPGTDTNDATLFATRLINADELIMSIPSSVMLTATNSPIKAL
EVQMPALATMPSLSLGLYLLHEASNPNSSFKPYIDILPSTFTTPFANFTP
QHLLSLRPSHASGAAIKSLRAQVRNYTYIYRTVSSQRVPVISPRVLTFSN
FVWALSVVMTRQNALPSTDPPTLALVPLWDLCNHEPGHFTTQVLVDTTVT
VECSAMRTFQSGEPITIFYGARPNVKLLLFSGFVQPNNAYDTLPVSLTIS
REEQLAPLKARALAKLGFDVQANVDENEPEQQNGHKGWSCAVGIGRGIVA
EALAVARVLAMDKPAFTDWLKRGASLPERAAVEPDIEADARRRVADVVRE
QLKLYPPLEDVTNEMRKSSSEMSPEVYQLLLSEKKLLEVDLDILENPNYD
QDESVEVEGVQRCGCCH*
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mRNA from alignment at ScGOVlb_647:1171630..1173183+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13966.t1 ID=Gvermi13966.t1|Name=Gvermi13966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at ScGOVlb_647:1171630..1173183+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCAAAACCAGAGTTCGTTCCAAGGCTGCGGGGCGAAAATTGTCATC
CAAGCATTCCAAAACATTCAAGGCCTCCCCAGCTATTCTTAAAGCCGTGG
AATCGCTCCAGCGTTTCGTCGAGGATCACCATCGGTGGGCGGCTGAAGAT
GAAAGTCTGCTTCTCCAACAACTTCAACAGATGCTTTTGAATCTGCAAAA
GCTGCAGAACGCAGAACAACAAAGCGTCATTCCGAAAAGAACCTCACACA
GTTTTACGGCTTTCACCGCTTGGTTATCCGCCAACGGCGTCAATCTTGAT
GACGCTCCGTTTCGGATTGACTTCACCCCAGGCACCGACACAAACGATGC
AACTTTGTTTGCCACACGATTGATCAACGCCGATGAGCTCATCATGTCAA
TCCCGTCTTCAGTCATGCTCACAGCCACCAATTCCCCAATCAAGGCATTG
GAAGTTCAAATGCCGGCCCTCGCCACCATGCCATCTCTGTCACTGGGCTT
GTACCTTTTGCATGAAGCATCCAACCCCAATAGTAGTTTCAAGCCATACA
TTGATATTCTTCCCAGCACGTTCACCACCCCATTTGCTAACTTCACTCCG
CAACATTTGCTCTCATTGCGACCGTCCCACGCTTCTGGCGCCGCGATAAA
GTCACTTCGTGCCCAGGTCCGCAACTACACTTACATCTATCGCACCGTAT
CCTCACAGCGAGTACCGGTCATTTCACCTCGGGTTCTCACGTTTTCCAAC
TTTGTATGGGCTCTTTCTGTCGTTATGACTCGCCAGAACGCCTTGCCGTC
TACGGACCCACCTACGCTGGCGCTCGTACCCCTCTGGGATCTTTGCAACC
ACGAGCCCGGTCATTTTACAACCCAAGTCTTGGTGGATACCACAGTGACT
GTCGAATGCTCGGCGATGAGGACATTCCAATCTGGAGAACCAATTACCAT
ATTCTACGGTGCAAGGCCAAATGTCAAACTTCTTTTGTTTTCTGGGTTCG
TTCAACCAAACAATGCCTATGATACGCTTCCTGTGTCGTTAACGATATCT
CGCGAAGAGCAGCTCGCACCCTTGAAAGCAAGGGCTCTTGCAAAGCTGGG
CTTTGATGTGCAGGCCAATGTCGACGAAAATGAGCCTGAGCAACAGAATG
GTCACAAAGGCTGGTCGTGTGCTGTCGGGATAGGCAGGGGAATTGTTGCA
GAAGCATTGGCTGTAGCCAGGGTGCTTGCCATGGACAAACCTGCCTTCAC
TGACTGGCTGAAAAGAGGAGCGTCCTTACCAGAGCGCGCCGCGGTTGAGC
CTGACATTGAAGCAGATGCGAGAAGAAGAGTCGCAGATGTTGTGCGGGAA
CAATTAAAACTGTATCCCCCCCTCGAGGATGTGACCAACGAAATGAGAAA
GAGCTCATCAGAGATGAGCCCGGAAGTGTACCAATTGCTTTTAAGTGAGA
AGAAGTTGCTTGAAGTCGACTTGGACATCTTGGAGAATCCAAATTACGAC
CAAGACGAATCTGTCGAAGTTGAGGGCGTTCAGCGTTGTGGTTGTTGTCA
CTAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1171630..1173183+

>Gvermi13966.t1 ID=Gvermi13966.t1|Name=Gvermi13966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1554bp|location=Sequence derived from alignment at ScGOVlb_647:1171630..1173183+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCAAAACCAGAGTTCGTTCCAAGGCTGCGGGGCGAAAATTGTCATC
CAAGCATTCCAAAACATTCAAGGCCTCCCCAGCTATTCTTAAAGCCGTGG
AATCGCTCCAGCGTTTCGTCGAGGATCACCATCGGTGGGCGGCTGAAGAT
GAAAGTCTGCTTCTCCAACAACTTCAACAGATGCTTTTGAATCTGCAAAA
GCTGCAGAACGCAGAACAACAAAGCGTCATTCCGAAAAGAACCTCACACA
GTTTTACGGCTTTCACCGCTTGGTTATCCGCCAACGGCGTCAATCTTGAT
GACGCTCCGTTTCGGATTGACTTCACCCCAGGCACCGACACAAACGATGC
AACTTTGTTTGCCACACGATTGATCAACGCCGATGAGCTCATCATGTCAA
TCCCGTCTTCAGTCATGCTCACAGCCACCAATTCCCCAATCAAGGCATTG
GAAGTTCAAATGCCGGCCCTCGCCACCATGCCATCTCTGTCACTGGGCTT
GTACCTTTTGCATGAAGCATCCAACCCCAATAGTAGTTTCAAGCCATACA
TTGATATTCTTCCCAGCACGTTCACCACCCCATTTGCTAACTTCACTCCG
CAACATTTGCTCTCATTGCGACCGTCCCACGCTTCTGGCGCCGCGATAAA
GTCACTTCGTGCCCAGGTCCGCAACTACACTTACATCTATCGCACCGTAT
CCTCACAGCGAGTACCGGTCATTTCACCTCGGGTTCTCACGTTTTCCAAC
TTTGTATGGGCTCTTTCTGTCGTTATGACTCGCCAGAACGCCTTGCCGTC
TACGGACCCACCTACGCTGGCGCTCGTACCCCTCTGGGATCTTTGCAACC
ACGAGCCCGGTCATTTTACAACCCAAGTCTTGGTGGATACCACAGTGACT
GTCGAATGCTCGGCGATGAGGACATTCCAATCTGGAGAACCAATTACCAT
ATTCTACGGTGCAAGGCCAAATGTCAAACTTCTTTTGTTTTCTGGGTTCG
TTCAACCAAACAATGCCTATGATACGCTTCCTGTGTCGTTAACGATATCT
CGCGAAGAGCAGCTCGCACCCTTGAAAGCAAGGGCTCTTGCAAAGCTGGG
CTTTGATGTGCAGGCCAATGTCGACGAAAATGAGCCTGAGCAACAGAATG
GTCACAAAGGCTGGTCGTGTGCTGTCGGGATAGGCAGGGGAATTGTTGCA
GAAGCATTGGCTGTAGCCAGGGTGCTTGCCATGGACAAACCTGCCTTCAC
TGACTGGCTGAAAAGAGGAGCGTCCTTACCAGAGCGCGCCGCGGTTGAGC
CTGACATTGAAGCAGATGCGAGAAGAAGAGTCGCAGATGTTGTGCGGGAA
CAATTAAAACTGTATCCCCCCCTCGAGGATGTGACCAACGAAATGAGAAA
GAGCTCATCAGAGATGAGCCCGGAAGTGTACCAATTGCTTTTAAGTGAGA
AGAAGTTGCTTGAAGTCGACTTGGACATCTTGGAGAATCCAAATTACGAC
CAAGACGAATCTGTCGAAGTTGAGGGCGTTCAGCGTTGTGGTTGTTGTCA
CTAA
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