Gvermi13964.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13964.t1
Unique NameGvermi13964.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1162096..1163097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002674370.1
PFAMsC2,Copine,WW
Max annot lvl2759|Eukaryota
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006971,GO:0007049,GO:0008150,GO:0008152,GO:0008289,GO:0009266,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010646,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0022402,GO:0030154,GO:0030587,GO:0031149,GO:0031150,GO:0031154,GO:0031156,GO:0031157,GO:0032101,GO:0032104,GO:0032107,GO:0032502,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042331,GO:0043052,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046956,GO:0048583,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051301,GO:0051592,GO:0051703,GO:0051704,GO:0052128,GO:0060176,GO:0060359,GO:0061640,GO:0065007,GO:0065008,GO:0071704,GO:0080134,GO:0080135,GO:0090702,GO:0099120,GO:0140096,GO:1901564,GO:1901698,GO:1903047
Evalue3.68e-12
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
Descriptionnegative regulation of response to water deprivation
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13964Gvermi13964Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1162096..1163097 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13964.t1.stop1Gvermi13964.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1162096..1162098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13964.t1.CDS1Gvermi13964.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1162096..1163097 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13964.t1.exon1Gvermi13964.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1162096..1163097 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13964.t1.start1Gvermi13964.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1163095..1163097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13964.t1Gvermi13964.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1162096..1163097 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13964.t1 ID=Gvermi13964.t1|Name=Gvermi13964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=334bp
MGLDATFSHDSLLDEQELSSIRLQYPRSSRLLLGTTANLQQPAFLKALET
NYPLELSVECRELAAPSRLLPFRQARPFAVFLYSEGANAPWELIGRTETV
VYDEYPRFVTKLKVCCATARDRQKVLRVELFDRRHKSELIEDQAFIGAAQ
CTLEDIIAEPLLRKELAVGESRSPNGGRVVISADAIRAREHAARLVLNVD
MASGTKRNQRVFYVLSRQLQSGEYTPVYRSEVLGRERKRFEAMSRDLTAV
TAGVDDKLLRLELYQFSGRGAHIRLGFMQTSVEKLKRTERHSRLLWWPNA
VGDGDGVIEVGRVVLVEAVVSSVLLQFRLRVTQ*
back to top

spliced messenger RNA

>Gvermi13964.t1 ID=Gvermi13964.t1|Name=Gvermi13964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at ScGOVlb_647:1162096..1163097- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCTCGACGCTACGTTCTCGCACGACTCTCTGCTCGACGAGCAGGA
GCTGAGCTCCATCCGGCTGCAGTACCCCAGGAGCAGCCGGCTGCTGCTCG
GCACGACGGCCAACCTGCAGCAGCCCGCGTTCCTCAAGGCGCTGGAAACC
AACTACCCGCTGGAACTGAGCGTGGAGTGCCGCGAACTGGCGGCGCCGTC
GCGGCTGCTGCCGTTCCGGCAGGCGCGGCCGTTCGCGGTGTTCCTGTACA
GCGAGGGCGCCAACGCGCCGTGGGAGCTGATCGGGCGCACCGAGACGGTG
GTGTACGACGAGTACCCGCGGTTCGTGACCAAGCTCAAGGTGTGCTGCGC
GACGGCGCGCGACCGGCAGAAGGTGCTGCGCGTGGAGCTGTTCGACCGGC
GGCACAAGAGCGAGCTGATCGAGGACCAGGCGTTCATCGGGGCGGCGCAG
TGCACGCTGGAGGACATCATCGCCGAGCCGCTGCTGCGCAAGGAGCTGGC
GGTGGGCGAGTCGCGCTCGCCCAACGGCGGGCGCGTGGTGATCTCGGCGG
ACGCGATCCGCGCGCGCGAGCACGCGGCGCGGCTGGTGCTCAACGTGGAC
ATGGCGTCGGGCACCAAGCGCAACCAGCGGGTGTTCTACGTGCTGTCGCG
GCAGCTGCAGTCGGGCGAGTACACGCCCGTGTACCGGTCCGAGGTGCTGG
GGCGCGAGCGCAAGCGCTTCGAGGCCATGAGCCGCGACCTGACGGCGGTG
ACGGCCGGCGTGGACGACAAGCTGCTGCGGCTGGAGCTGTACCAGTTCAG
CGGGCGCGGGGCGCACATCCGGCTGGGCTTCATGCAGACCAGCGTGGAGA
AGCTCAAGCGCACGGAGCGGCACAGCCGGCTGCTTTGGTGGCCGAACGCC
GTGGGCGACGGCGACGGCGTCATCGAGGTGGGGCGCGTGGTGCTGGTGGA
GGCGGTGGTGAGCTCGGTGCTGCTGCAGTTCCGGCTGCGCGTGACGCAGT
GA
back to top

protein sequence of Gvermi13964.t1

>Gvermi13964.t1 ID=Gvermi13964.t1|Name=Gvermi13964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=334bp
MGLDATFSHDSLLDEQELSSIRLQYPRSSRLLLGTTANLQQPAFLKALET
NYPLELSVECRELAAPSRLLPFRQARPFAVFLYSEGANAPWELIGRTETV
VYDEYPRFVTKLKVCCATARDRQKVLRVELFDRRHKSELIEDQAFIGAAQ
CTLEDIIAEPLLRKELAVGESRSPNGGRVVISADAIRAREHAARLVLNVD
MASGTKRNQRVFYVLSRQLQSGEYTPVYRSEVLGRERKRFEAMSRDLTAV
TAGVDDKLLRLELYQFSGRGAHIRLGFMQTSVEKLKRTERHSRLLWWPNA
VGDGDGVIEVGRVVLVEAVVSSVLLQFRLRVTQ*
back to top

mRNA from alignment at ScGOVlb_647:1162096..1163097-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13964.t1 ID=Gvermi13964.t1|Name=Gvermi13964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at ScGOVlb_647:1162096..1163097- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCCTCGACGCTACGTTCTCGCACGACTCTCTGCTCGACGAGCAGGA
GCTGAGCTCCATCCGGCTGCAGTACCCCAGGAGCAGCCGGCTGCTGCTCG
GCACGACGGCCAACCTGCAGCAGCCCGCGTTCCTCAAGGCGCTGGAAACC
AACTACCCGCTGGAACTGAGCGTGGAGTGCCGCGAACTGGCGGCGCCGTC
GCGGCTGCTGCCGTTCCGGCAGGCGCGGCCGTTCGCGGTGTTCCTGTACA
GCGAGGGCGCCAACGCGCCGTGGGAGCTGATCGGGCGCACCGAGACGGTG
GTGTACGACGAGTACCCGCGGTTCGTGACCAAGCTCAAGGTGTGCTGCGC
GACGGCGCGCGACCGGCAGAAGGTGCTGCGCGTGGAGCTGTTCGACCGGC
GGCACAAGAGCGAGCTGATCGAGGACCAGGCGTTCATCGGGGCGGCGCAG
TGCACGCTGGAGGACATCATCGCCGAGCCGCTGCTGCGCAAGGAGCTGGC
GGTGGGCGAGTCGCGCTCGCCCAACGGCGGGCGCGTGGTGATCTCGGCGG
ACGCGATCCGCGCGCGCGAGCACGCGGCGCGGCTGGTGCTCAACGTGGAC
ATGGCGTCGGGCACCAAGCGCAACCAGCGGGTGTTCTACGTGCTGTCGCG
GCAGCTGCAGTCGGGCGAGTACACGCCCGTGTACCGGTCCGAGGTGCTGG
GGCGCGAGCGCAAGCGCTTCGAGGCCATGAGCCGCGACCTGACGGCGGTG
ACGGCCGGCGTGGACGACAAGCTGCTGCGGCTGGAGCTGTACCAGTTCAG
CGGGCGCGGGGCGCACATCCGGCTGGGCTTCATGCAGACCAGCGTGGAGA
AGCTCAAGCGCACGGAGCGGCACAGCCGGCTGCTTTGGTGGCCGAACGCC
GTGGGCGACGGCGACGGCGTCATCGAGGTGGGGCGCGTGGTGCTGGTGGA
GGCGGTGGTGAGCTCGGTGCTGCTGCAGTTCCGGCTGCGCGTGACGCAGT
GA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_647:1162096..1163097-

>Gvermi13964.t1 ID=Gvermi13964.t1|Name=Gvermi13964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1002bp|location=Sequence derived from alignment at ScGOVlb_647:1162096..1163097- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCCTCGACGCTACGTTCTCGCACGACTCTCTGCTCGACGAGCAGGA
GCTGAGCTCCATCCGGCTGCAGTACCCCAGGAGCAGCCGGCTGCTGCTCG
GCACGACGGCCAACCTGCAGCAGCCCGCGTTCCTCAAGGCGCTGGAAACC
AACTACCCGCTGGAACTGAGCGTGGAGTGCCGCGAACTGGCGGCGCCGTC
GCGGCTGCTGCCGTTCCGGCAGGCGCGGCCGTTCGCGGTGTTCCTGTACA
GCGAGGGCGCCAACGCGCCGTGGGAGCTGATCGGGCGCACCGAGACGGTG
GTGTACGACGAGTACCCGCGGTTCGTGACCAAGCTCAAGGTGTGCTGCGC
GACGGCGCGCGACCGGCAGAAGGTGCTGCGCGTGGAGCTGTTCGACCGGC
GGCACAAGAGCGAGCTGATCGAGGACCAGGCGTTCATCGGGGCGGCGCAG
TGCACGCTGGAGGACATCATCGCCGAGCCGCTGCTGCGCAAGGAGCTGGC
GGTGGGCGAGTCGCGCTCGCCCAACGGCGGGCGCGTGGTGATCTCGGCGG
ACGCGATCCGCGCGCGCGAGCACGCGGCGCGGCTGGTGCTCAACGTGGAC
ATGGCGTCGGGCACCAAGCGCAACCAGCGGGTGTTCTACGTGCTGTCGCG
GCAGCTGCAGTCGGGCGAGTACACGCCCGTGTACCGGTCCGAGGTGCTGG
GGCGCGAGCGCAAGCGCTTCGAGGCCATGAGCCGCGACCTGACGGCGGTG
ACGGCCGGCGTGGACGACAAGCTGCTGCGGCTGGAGCTGTACCAGTTCAG
CGGGCGCGGGGCGCACATCCGGCTGGGCTTCATGCAGACCAGCGTGGAGA
AGCTCAAGCGCACGGAGCGGCACAGCCGGCTGCTTTGGTGGCCGAACGCC
GTGGGCGACGGCGACGGCGTCATCGAGGTGGGGCGCGTGGTGCTGGTGGA
GGCGGTGGTGAGCTCGGTGCTGCTGCAGTTCCGGCTGCGCGTGACGCAGT
GA
back to top