Gvermi13954.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13954.t1
Unique NameGvermi13954.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length587
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1078364..1080124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702540.1
PFAMsWD40
Max annot lvl2759|Eukaryota
Evalue1.39e-129
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
DescriptionWD repeat-containing protein
COG categoryB
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13954Gvermi13954Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1078364..1080124 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13954.t1.stop1Gvermi13954.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1078364..1078366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13954.t1.CDS1Gvermi13954.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1078364..1080124 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13954.t1.exon1Gvermi13954.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1078364..1080124 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13954.t1.start1Gvermi13954.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1080122..1080124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13954.t1Gvermi13954.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1078364..1080124 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13954.t1 ID=Gvermi13954.t1|Name=Gvermi13954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=587bp
MDARFGDRALRAAVLDHSVFDASDPAIKLDIVQAIIQYLHDEGYHDASAA
VQHEANVKIGNAASKRSQLRRMKGAILEGEWQEVEQLLSRTTFRTIKPFK
FAVYTQQFLELIHHQEPQKAYSVLHRRLKHLEPYARTPDEFRDMCYLLTC
KSVTDAPSFRHWDGVASSRAALVDQYSRLLEFDISHRDGFLPHTRSPTGE
TLIDPTDIPPARLLHLLQQALAFQIASSRHAPKLPPRIGTLLDDYETVVV
PNKLQRAFVGHTANVKCVTFVGDEGDALASGSSDNTVRIWDIHSGTQPRV
LRGHTSRIWDVSATVNGKLLASASGDGTIRVWDTAALLHAQHAGRWPVKA
HERAVANARVNGNAGADGAACRAVLHGHASDVYAVRMQARGNAVASGGYD
TLVRLYDTETQTLLKSFGGHSSSISSVCFNARGNLIVTGSKDSSIKFWDV
VSGLCVRTLSAHLGEVTSVEINESGCLMVSSSKDNSNRLWDIRMTKVVKR
FKGHQNTSKNFVRSVFGPRESVVIGGSEDGHVYMWDVESSEVLQKLGAGG
GTVFDVEWNGRQSVLASCAHDGIVSVWCFDEAQPQE*
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spliced messenger RNA

>Gvermi13954.t1 ID=Gvermi13954.t1|Name=Gvermi13954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1761bp|location=Sequence derived from alignment at ScGOVlb_647:1078364..1080124- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCGCGCTTCGGCGATCGCGCGCTGCGCGCCGCCGTGCTGGACCA
CTCCGTGTTCGACGCCAGCGACCCCGCCATCAAGCTCGACATCGTGCAGG
CCATCATCCAGTACCTGCACGACGAGGGCTACCACGACGCCTCCGCCGCC
GTGCAGCACGAGGCCAACGTCAAGATCGGCAACGCCGCGTCCAAGCGCTC
GCAGCTGCGCCGCATGAAGGGCGCCATTCTGGAGGGCGAGTGGCAGGAGG
TGGAGCAACTGCTGTCGCGCACCACGTTCCGCACCATCAAGCCCTTCAAG
TTCGCCGTGTACACGCAGCAGTTCCTCGAGCTCATCCACCACCAGGAGCC
CCAGAAGGCCTACTCCGTCCTGCACCGCCGCCTCAAGCACCTGGAGCCGT
ACGCGCGCACGCCCGACGAGTTCCGCGACATGTGCTACCTGCTCACGTGC
AAGTCCGTCACCGACGCCCCGTCCTTCCGCCACTGGGACGGCGTCGCCTC
CAGCCGCGCCGCCCTCGTCGACCAGTACTCGCGCCTGCTCGAGTTCGACA
TCTCCCACCGCGACGGCTTCCTCCCGCACACCCGCTCGCCCACCGGCGAG
ACGCTCATAGACCCCACCGACATCCCGCCCGCCCGCCTGCTGCACCTGCT
GCAGCAGGCGCTCGCCTTTCAGATCGCCTCGTCGCGCCACGCCCCCAAGC
TCCCGCCGCGCATCGGCACCCTGCTGGACGACTACGAGACCGTCGTCGTG
CCCAACAAGCTGCAGCGCGCCTTCGTGGGGCACACGGCCAACGTCAAGTG
CGTCACCTTTGTGGGCGACGAGGGCGACGCCCTCGCCAGCGGCTCCAGCG
ACAACACCGTGCGCATCTGGGACATCCACTCCGGCACCCAGCCGCGCGTT
CTGCGCGGCCACACGTCGCGCATCTGGGACGTCAGCGCCACCGTCAATGG
AAAGCTGCTGGCCAGCGCCAGCGGCGACGGGACCATTCGCGTGTGGGACA
CCGCCGCGCTGCTGCACGCGCAGCACGCCGGCCGCTGGCCCGTGAAAGCG
CACGAGCGCGCCGTCGCCAACGCGCGCGTCAACGGCAACGCGGGCGCGGA
CGGCGCCGCGTGTCGCGCCGTGTTGCACGGCCACGCCAGCGATGTGTACG
CGGTGCGAATGCAGGCGCGGGGGAACGCCGTGGCTAGCGGGGGTTATGAC
ACATTGGTGCGCCTTTATGACACAGAGACGCAGACGCTGTTGAAGAGCTT
TGGCGGGCACAGCAGCTCCATCAGCAGCGTGTGCTTCAACGCGCGGGGGA
ATTTGATCGTCACCGGCAGCAAAGATTCGAGCATCAAGTTCTGGGACGTG
GTGAGCGGGCTGTGCGTGCGAACGCTGAGCGCGCACTTGGGCGAGGTAAC
ATCTGTGGAAATCAACGAATCAGGGTGTTTGATGGTGTCCAGCTCAAAGG
ACAACTCCAATCGGCTGTGGGATATCCGGATGACAAAGGTGGTGAAACGG
TTCAAGGGGCACCAGAACACGAGCAAAAACTTTGTGCGAAGTGTGTTTGG
ACCGCGGGAAAGCGTGGTAATCGGCGGGAGCGAGGATGGACATGTGTACA
TGTGGGATGTGGAAAGCAGCGAGGTGTTACAAAAGCTGGGCGCCGGCGGA
GGCACGGTGTTCGACGTGGAGTGGAATGGGAGGCAGAGCGTGCTGGCGAG
CTGCGCGCACGACGGTATTGTCAGCGTGTGGTGCTTCGACGAAGCGCAGC
CGCAGGAGTGA
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protein sequence of Gvermi13954.t1

>Gvermi13954.t1 ID=Gvermi13954.t1|Name=Gvermi13954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=587bp
MDARFGDRALRAAVLDHSVFDASDPAIKLDIVQAIIQYLHDEGYHDASAA
VQHEANVKIGNAASKRSQLRRMKGAILEGEWQEVEQLLSRTTFRTIKPFK
FAVYTQQFLELIHHQEPQKAYSVLHRRLKHLEPYARTPDEFRDMCYLLTC
KSVTDAPSFRHWDGVASSRAALVDQYSRLLEFDISHRDGFLPHTRSPTGE
TLIDPTDIPPARLLHLLQQALAFQIASSRHAPKLPPRIGTLLDDYETVVV
PNKLQRAFVGHTANVKCVTFVGDEGDALASGSSDNTVRIWDIHSGTQPRV
LRGHTSRIWDVSATVNGKLLASASGDGTIRVWDTAALLHAQHAGRWPVKA
HERAVANARVNGNAGADGAACRAVLHGHASDVYAVRMQARGNAVASGGYD
TLVRLYDTETQTLLKSFGGHSSSISSVCFNARGNLIVTGSKDSSIKFWDV
VSGLCVRTLSAHLGEVTSVEINESGCLMVSSSKDNSNRLWDIRMTKVVKR
FKGHQNTSKNFVRSVFGPRESVVIGGSEDGHVYMWDVESSEVLQKLGAGG
GTVFDVEWNGRQSVLASCAHDGIVSVWCFDEAQPQE*
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mRNA from alignment at ScGOVlb_647:1078364..1080124-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13954.t1 ID=Gvermi13954.t1|Name=Gvermi13954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1761bp|location=Sequence derived from alignment at ScGOVlb_647:1078364..1080124- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCGCGCTTCGGCGATCGCGCGCTGCGCGCCGCCGTGCTGGACCA
CTCCGTGTTCGACGCCAGCGACCCCGCCATCAAGCTCGACATCGTGCAGG
CCATCATCCAGTACCTGCACGACGAGGGCTACCACGACGCCTCCGCCGCC
GTGCAGCACGAGGCCAACGTCAAGATCGGCAACGCCGCGTCCAAGCGCTC
GCAGCTGCGCCGCATGAAGGGCGCCATTCTGGAGGGCGAGTGGCAGGAGG
TGGAGCAACTGCTGTCGCGCACCACGTTCCGCACCATCAAGCCCTTCAAG
TTCGCCGTGTACACGCAGCAGTTCCTCGAGCTCATCCACCACCAGGAGCC
CCAGAAGGCCTACTCCGTCCTGCACCGCCGCCTCAAGCACCTGGAGCCGT
ACGCGCGCACGCCCGACGAGTTCCGCGACATGTGCTACCTGCTCACGTGC
AAGTCCGTCACCGACGCCCCGTCCTTCCGCCACTGGGACGGCGTCGCCTC
CAGCCGCGCCGCCCTCGTCGACCAGTACTCGCGCCTGCTCGAGTTCGACA
TCTCCCACCGCGACGGCTTCCTCCCGCACACCCGCTCGCCCACCGGCGAG
ACGCTCATAGACCCCACCGACATCCCGCCCGCCCGCCTGCTGCACCTGCT
GCAGCAGGCGCTCGCCTTTCAGATCGCCTCGTCGCGCCACGCCCCCAAGC
TCCCGCCGCGCATCGGCACCCTGCTGGACGACTACGAGACCGTCGTCGTG
CCCAACAAGCTGCAGCGCGCCTTCGTGGGGCACACGGCCAACGTCAAGTG
CGTCACCTTTGTGGGCGACGAGGGCGACGCCCTCGCCAGCGGCTCCAGCG
ACAACACCGTGCGCATCTGGGACATCCACTCCGGCACCCAGCCGCGCGTT
CTGCGCGGCCACACGTCGCGCATCTGGGACGTCAGCGCCACCGTCAATGG
AAAGCTGCTGGCCAGCGCCAGCGGCGACGGGACCATTCGCGTGTGGGACA
CCGCCGCGCTGCTGCACGCGCAGCACGCCGGCCGCTGGCCCGTGAAAGCG
CACGAGCGCGCCGTCGCCAACGCGCGCGTCAACGGCAACGCGGGCGCGGA
CGGCGCCGCGTGTCGCGCCGTGTTGCACGGCCACGCCAGCGATGTGTACG
CGGTGCGAATGCAGGCGCGGGGGAACGCCGTGGCTAGCGGGGGTTATGAC
ACATTGGTGCGCCTTTATGACACAGAGACGCAGACGCTGTTGAAGAGCTT
TGGCGGGCACAGCAGCTCCATCAGCAGCGTGTGCTTCAACGCGCGGGGGA
ATTTGATCGTCACCGGCAGCAAAGATTCGAGCATCAAGTTCTGGGACGTG
GTGAGCGGGCTGTGCGTGCGAACGCTGAGCGCGCACTTGGGCGAGGTAAC
ATCTGTGGAAATCAACGAATCAGGGTGTTTGATGGTGTCCAGCTCAAAGG
ACAACTCCAATCGGCTGTGGGATATCCGGATGACAAAGGTGGTGAAACGG
TTCAAGGGGCACCAGAACACGAGCAAAAACTTTGTGCGAAGTGTGTTTGG
ACCGCGGGAAAGCGTGGTAATCGGCGGGAGCGAGGATGGACATGTGTACA
TGTGGGATGTGGAAAGCAGCGAGGTGTTACAAAAGCTGGGCGCCGGCGGA
GGCACGGTGTTCGACGTGGAGTGGAATGGGAGGCAGAGCGTGCTGGCGAG
CTGCGCGCACGACGGTATTGTCAGCGTGTGGTGCTTCGACGAAGCGCAGC
CGCAGGAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1078364..1080124-

>Gvermi13954.t1 ID=Gvermi13954.t1|Name=Gvermi13954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1761bp|location=Sequence derived from alignment at ScGOVlb_647:1078364..1080124- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCGCGCTTCGGCGATCGCGCGCTGCGCGCCGCCGTGCTGGACCA
CTCCGTGTTCGACGCCAGCGACCCCGCCATCAAGCTCGACATCGTGCAGG
CCATCATCCAGTACCTGCACGACGAGGGCTACCACGACGCCTCCGCCGCC
GTGCAGCACGAGGCCAACGTCAAGATCGGCAACGCCGCGTCCAAGCGCTC
GCAGCTGCGCCGCATGAAGGGCGCCATTCTGGAGGGCGAGTGGCAGGAGG
TGGAGCAACTGCTGTCGCGCACCACGTTCCGCACCATCAAGCCCTTCAAG
TTCGCCGTGTACACGCAGCAGTTCCTCGAGCTCATCCACCACCAGGAGCC
CCAGAAGGCCTACTCCGTCCTGCACCGCCGCCTCAAGCACCTGGAGCCGT
ACGCGCGCACGCCCGACGAGTTCCGCGACATGTGCTACCTGCTCACGTGC
AAGTCCGTCACCGACGCCCCGTCCTTCCGCCACTGGGACGGCGTCGCCTC
CAGCCGCGCCGCCCTCGTCGACCAGTACTCGCGCCTGCTCGAGTTCGACA
TCTCCCACCGCGACGGCTTCCTCCCGCACACCCGCTCGCCCACCGGCGAG
ACGCTCATAGACCCCACCGACATCCCGCCCGCCCGCCTGCTGCACCTGCT
GCAGCAGGCGCTCGCCTTTCAGATCGCCTCGTCGCGCCACGCCCCCAAGC
TCCCGCCGCGCATCGGCACCCTGCTGGACGACTACGAGACCGTCGTCGTG
CCCAACAAGCTGCAGCGCGCCTTCGTGGGGCACACGGCCAACGTCAAGTG
CGTCACCTTTGTGGGCGACGAGGGCGACGCCCTCGCCAGCGGCTCCAGCG
ACAACACCGTGCGCATCTGGGACATCCACTCCGGCACCCAGCCGCGCGTT
CTGCGCGGCCACACGTCGCGCATCTGGGACGTCAGCGCCACCGTCAATGG
AAAGCTGCTGGCCAGCGCCAGCGGCGACGGGACCATTCGCGTGTGGGACA
CCGCCGCGCTGCTGCACGCGCAGCACGCCGGCCGCTGGCCCGTGAAAGCG
CACGAGCGCGCCGTCGCCAACGCGCGCGTCAACGGCAACGCGGGCGCGGA
CGGCGCCGCGTGTCGCGCCGTGTTGCACGGCCACGCCAGCGATGTGTACG
CGGTGCGAATGCAGGCGCGGGGGAACGCCGTGGCTAGCGGGGGTTATGAC
ACATTGGTGCGCCTTTATGACACAGAGACGCAGACGCTGTTGAAGAGCTT
TGGCGGGCACAGCAGCTCCATCAGCAGCGTGTGCTTCAACGCGCGGGGGA
ATTTGATCGTCACCGGCAGCAAAGATTCGAGCATCAAGTTCTGGGACGTG
GTGAGCGGGCTGTGCGTGCGAACGCTGAGCGCGCACTTGGGCGAGGTAAC
ATCTGTGGAAATCAACGAATCAGGGTGTTTGATGGTGTCCAGCTCAAAGG
ACAACTCCAATCGGCTGTGGGATATCCGGATGACAAAGGTGGTGAAACGG
TTCAAGGGGCACCAGAACACGAGCAAAAACTTTGTGCGAAGTGTGTTTGG
ACCGCGGGAAAGCGTGGTAATCGGCGGGAGCGAGGATGGACATGTGTACA
TGTGGGATGTGGAAAGCAGCGAGGTGTTACAAAAGCTGGGCGCCGGCGGA
GGCACGGTGTTCGACGTGGAGTGGAATGGGAGGCAGAGCGTGCTGGCGAG
CTGCGCGCACGACGGTATTGTCAGCGTGTGGTGCTTCGACGAAGCGCAGC
CGCAGGAGTGA
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