Gvermi13934.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13934.t1
Unique NameGvermi13934.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length267
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1036846..1037710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706460.1
Max annot lvl2759|Eukaryota
Evalue9.52e-68
EggNOG OGs28Q09@1|root,2QWNX@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13934Gvermi13934Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1036846..1037710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13934.t1Gvermi13934.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1036846..1037710 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13934.t1.stop1Gvermi13934.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1036846..1036848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13934.t1.CDS1Gvermi13934.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1036846..1037230 -
Gvermi13934.t1.CDS2Gvermi13934.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1037295..1037710 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13934.t1.exon1Gvermi13934.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1036846..1037230 -
Gvermi13934.t1.exon2Gvermi13934.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1037295..1037710 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13934.t1.intron1Gvermi13934.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_647 1037231..1037294 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13934.t1.start1Gvermi13934.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1037708..1037710 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13934.t1 ID=Gvermi13934.t1|Name=Gvermi13934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=267bp
MSGTSFVYALDFDGVICDSAHESARTALLAAKVKWPDLCLPSSPNDSFPE
TRVQALCAVRPVIETGYENVVLGRMVAEADENKLDEQFVQPILNDWPSIR
DARMVDWQLEKNDLIQVFGNVRDRWITENQLSWLNANKFFPDVVDAINSS
SGPVYIITTKQTRFAHLLLQHNKASIPIEHIYGFEKGSKISVLKELIAMP
EHQGKQIMFVEDRYETLEKVSLSMLGQPLQLFLATWGYNTPQIRQVAEKH
PFITLLDLPTFVNKFQ*
back to top

spliced messenger RNA

>Gvermi13934.t1 ID=Gvermi13934.t1|Name=Gvermi13934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=801bp|location=Sequence derived from alignment at ScGOVlb_647:1036846..1037710- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGGCACATCTTTCGTCTACGCTCTTGATTTTGACGGAGTCATCTG
CGATAGCGCACACGAATCGGCGCGCACTGCACTGCTCGCAGCCAAGGTTA
AATGGCCAGATTTATGTCTGCCATCCTCTCCGAACGATAGCTTTCCGGAA
ACCAGAGTTCAGGCACTGTGTGCAGTTCGTCCAGTAATTGAAACAGGATA
TGAGAATGTTGTATTGGGCCGAATGGTCGCTGAAGCCGACGAGAACAAGC
TAGACGAGCAGTTTGTACAACCAATTTTGAACGATTGGCCTTCCATCCGC
GATGCACGTATGGTTGATTGGCAACTCGAAAAGAATGATCTCATTCAAGT
GTTTGGAAATGTCAGGGATAGATGGATAACAGAGAACCAGTTATCTTGGC
TCAATGCAAACAAATTTTTTCCTGATGTAGTGGATGCCATCAACTCGTCT
TCAGGCCCTGTGTATATCATCACAACCAAACAAACTCGATTCGCTCACCT
ACTCCTTCAGCACAACAAGGCCAGCATCCCCATTGAACATATTTACGGTT
TTGAGAAGGGCTCCAAGATATCCGTTCTTAAGGAGCTAATTGCTATGCCC
GAACACCAAGGCAAGCAAATTATGTTTGTGGAAGATCGTTACGAGACATT
AGAGAAAGTGTCTTTGAGCATGTTAGGTCAGCCTTTACAACTCTTTCTTG
CTACATGGGGCTACAACACTCCACAAATTCGCCAAGTGGCCGAAAAGCAC
CCGTTCATCACACTTCTTGACCTTCCGACTTTTGTCAACAAGTTTCAGTA
A
back to top

protein sequence of Gvermi13934.t1

>Gvermi13934.t1 ID=Gvermi13934.t1|Name=Gvermi13934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=267bp
MSGTSFVYALDFDGVICDSAHESARTALLAAKVKWPDLCLPSSPNDSFPE
TRVQALCAVRPVIETGYENVVLGRMVAEADENKLDEQFVQPILNDWPSIR
DARMVDWQLEKNDLIQVFGNVRDRWITENQLSWLNANKFFPDVVDAINSS
SGPVYIITTKQTRFAHLLLQHNKASIPIEHIYGFEKGSKISVLKELIAMP
EHQGKQIMFVEDRYETLEKVSLSMLGQPLQLFLATWGYNTPQIRQVAEKH
PFITLLDLPTFVNKFQ*
back to top

mRNA from alignment at ScGOVlb_647:1036846..1037710-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13934.t1 ID=Gvermi13934.t1|Name=Gvermi13934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=865bp|location=Sequence derived from alignment at ScGOVlb_647:1036846..1037710- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGGCACATCTTTCGTCTACGCTCTTGATTTTGACGGAGTCATCTG
CGATAGCGCACACGAATCGGCGCGCACTGCACTGCTCGCAGCCAAGGTTA
AATGGCCAGATTTATGTCTGCCATCCTCTCCGAACGATAGCTTTCCGGAA
ACCAGAGTTCAGGCACTGTGTGCAGTTCGTCCAGTAATTGAAACAGGATA
TGAGAATGTTGTATTGGGCCGAATGGTCGCTGAAGCCGACGAGAACAAGC
TAGACGAGCAGTTTGTACAACCAATTTTGAACGATTGGCCTTCCATCCGC
GATGCACGTATGGTTGATTGGCAACTCGAAAAGAATGATCTCATTCAAGT
GTTTGGAAATGTCAGGGATAGATGGATAACAGAGAACCAGTTATCTTGGC
TCAATGCAAACAAATTGTACGTCCACATGCACTTCTATCACCATTTATCT
CTCTCAAATGACTAATGTAACGTTGCTTAGTTTTCCTGATGTAGTGGATG
CCATCAACTCGTCTTCAGGCCCTGTGTATATCATCACAACCAAACAAACT
CGATTCGCTCACCTACTCCTTCAGCACAACAAGGCCAGCATCCCCATTGA
ACATATTTACGGTTTTGAGAAGGGCTCCAAGATATCCGTTCTTAAGGAGC
TAATTGCTATGCCCGAACACCAAGGCAAGCAAATTATGTTTGTGGAAGAT
CGTTACGAGACATTAGAGAAAGTGTCTTTGAGCATGTTAGGTCAGCCTTT
ACAACTCTTTCTTGCTACATGGGGCTACAACACTCCACAAATTCGCCAAG
TGGCCGAAAAGCACCCGTTCATCACACTTCTTGACCTTCCGACTTTTGTC
AACAAGTTTCAGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_647:1036846..1037710-

>Gvermi13934.t1 ID=Gvermi13934.t1|Name=Gvermi13934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=801bp|location=Sequence derived from alignment at ScGOVlb_647:1036846..1037710- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGGCACATCTTTCGTCTACGCTCTTGATTTTGACGGAGTCATCTG
CGATAGCGCACACGAATCGGCGCGCACTGCACTGCTCGCAGCCAAGGTTA
AATGGCCAGATTTATGTCTGCCATCCTCTCCGAACGATAGCTTTCCGGAA
ACCAGAGTTCAGGCACTGTGTGCAGTTCGTCCAGTAATTGAAACAGGATA
TGAGAATGTTGTATTGGGCCGAATGGTCGCTGAAGCCGACGAGAACAAGC
TAGACGAGCAGTTTGTACAACCAATTTTGAACGATTGGCCTTCCATCCGC
GATGCACGTATGGTTGATTGGCAACTCGAAAAGAATGATCTCATTCAAGT
GTTTGGAAATGTCAGGGATAGATGGATAACAGAGAACCAGTTATCTTGGC
TCAATGCAAACAAATTTTTTCCTGATGTAGTGGATGCCATCAACTCGTCT
TCAGGCCCTGTGTATATCATCACAACCAAACAAACTCGATTCGCTCACCT
ACTCCTTCAGCACAACAAGGCCAGCATCCCCATTGAACATATTTACGGTT
TTGAGAAGGGCTCCAAGATATCCGTTCTTAAGGAGCTAATTGCTATGCCC
GAACACCAAGGCAAGCAAATTATGTTTGTGGAAGATCGTTACGAGACATT
AGAGAAAGTGTCTTTGAGCATGTTAGGTCAGCCTTTACAACTCTTTCTTG
CTACATGGGGCTACAACACTCCACAAATTCGCCAAGTGGCCGAAAAGCAC
CCGTTCATCACACTTCTTGACCTTCCGACTTTTGTCAACAAGTTTCAGTA
A
back to top