Gvermi13895.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13895.t1
Unique Name	Gvermi13895.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	667

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_647	contig	ScGOVlb_647:747761..749761 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10036.XP_005081998.1
Preferred name	ZNHIT6
PFAMs	zf-HIT
Max annot lvl	33208\|Metazoa
GOs	GO:0000491,GO:0000492,GO:0000902,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0006403,GO:0007275,GO:0007399,GO:0008134,GO:0008150,GO:0009653,GO:0009987,GO:0016043,GO:0019899,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0034622,GO:0042802,GO:0043933,GO:0044085,GO:0048254,GO:0048468,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0051117,GO:0051179,GO:0051259,GO:0065003,GO:0070761,GO:0071826,GO:0071840,GO:0120036,GO:0120039,GO:1990904
Evalue	1.22e-18
EggNOG OGs	KOG2858@1\|root,KOG2858@2759\|Eukaryota,39UNB@33154\|Opisthokonta,3B9SC@33208\|Metazoa,3D2FP@33213\|Bilateria,483IP@7711\|Chordata,48X3Z@7742\|Vertebrata,3JD8P@40674\|Mammalia,3594W@314146\|Euarchontoglires,4Q00Q@9989\|Rodentia
Description	box C D snoRNA protein 1
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13895	Gvermi13895	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_647 747761..749761 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13895.t1.stop1	Gvermi13895.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_647 747761..747763 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13895.t1.CDS1	Gvermi13895.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_647 747761..749761 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13895.t1.exon1	Gvermi13895.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_647 747761..749761 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13895.t1.start1	Gvermi13895.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_647 749759..749761 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13895.t1	Gvermi13895.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_647 747761..749761 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_647:747761..749761-
coding sequence from alignment at ScGOVlb_647:747761..749761-

mRNA sequence

>Gvermi13895.t1 ID=Gvermi13895.t1|Name=Gvermi13895.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=667bp
MRRQHPCDSCARVGKVQVSQYRCPACLRCSCSLACVKDHKLHYSCSGVRD
KAAPVPKRLYDEHNLISDYALLEEAKRAKDQASHNRVKNFYNPRAPTPVH
DPIPKHKQRIMGREAAKRGIDLRFMPNMFYRHRVNTSHVKPVDYSKAQQH
NGVASFDGFERRFDKIMVWRVDVQFSGTDGGTRLVEVRDLDEEANMNHVL
ERAVKSLHIRNEPRLNGAVDPYLHYSGLSGNQLNAYIKNEISLGARRAQP
TSLPDFPKYKRRKIVDGRVSLGHLELDTRGFILVDTDKTLRESLYSALVV
EYPILYIAPKGSEEDKQLQQATKSLFDKPELEADDSVRPPTTLVPPDDSQ
ENGISQEKVQMREAHIAASNVNTDSLPASAVPNGNQQEAQFVEKSIVMDR
DDSKIGKNASAIPSSDEKAALESLPRGVKRKATTESSDDDESDLSELERN
ITKRFTPHRKNGGKTGWTRDGKVRTADEEKPAPLPVPIPKFRSVLPPIHY
DKHDRVDMDKEKESSRRDGSSPAVSDPEDSESESHKEKYSGEGSNEIESS
KPYAGTDIVEQWDEKEVVGQKRSVKKLAQERRRPAKRQRFEDLETIEVKK
ESKPDDLESDQSDDEDEDGEKPKSRQLSDVESPTLPFLKVDSVLLDTRIP
RRKKIADPNGRETLAC*

spliced messenger RNA

>Gvermi13895.t1 ID=Gvermi13895.t1|Name=Gvermi13895.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2001bp|location=Sequence derived from alignment at ScGOVlb_647:747761..749761- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCGCCAACATCCGTGCGACTCGTGCGCCCGCGTCGGAAAGGTGCA
GGTTTCGCAGTATCGCTGCCCGGCCTGTCTGCGCTGCTCCTGCTCGCTCG
CCTGCGTCAAGGATCACAAGCTGCACTACAGCTGCTCTGGCGTTCGCGAT
AAGGCCGCCCCAGTCCCGAAGCGCCTCTATGACGAACACAATTTAATCAG
TGACTACGCTTTGCTCGAGGAGGCAAAGCGCGCAAAGGACCAAGCCAGTC
ACAACCGCGTCAAGAATTTTTACAATCCACGCGCCCCCACGCCCGTGCAT
GACCCCATTCCCAAACATAAGCAACGCATCATGGGGCGCGAGGCCGCCAA
GCGCGGCATTGACCTGCGCTTCATGCCCAATATGTTCTACCGCCACCGAG
TCAACACCTCGCACGTCAAGCCTGTCGACTACTCCAAAGCACAACAACAC
AATGGCGTCGCATCCTTCGACGGCTTTGAGCGTCGCTTTGACAAAATCAT
GGTGTGGCGAGTAGACGTTCAATTTTCTGGCACCGACGGCGGGACAAGGC
TTGTCGAGGTCCGCGACCTCGACGAAGAGGCCAACATGAACCATGTGCTC
GAGCGAGCCGTCAAATCTCTCCACATTCGAAATGAGCCTCGATTGAACGG
AGCCGTCGATCCGTATCTGCATTACTCCGGACTTTCGGGAAACCAGCTCA
ATGCCTACATCAAGAATGAGATCAGCCTGGGAGCCCGAAGGGCGCAGCCC
ACAAGCCTCCCAGACTTTCCCAAGTACAAACGCCGAAAGATCGTCGATGG
CCGCGTCAGTCTTGGCCATCTGGAGTTGGATACGCGTGGTTTCATCCTTG
TGGACACTGACAAGACATTGCGTGAATCCTTGTACAGCGCCCTGGTTGTA
GAATACCCCATTCTTTACATTGCCCCAAAAGGGTCGGAGGAAGACAAACA
ACTCCAACAAGCCACCAAAAGCCTGTTCGACAAGCCGGAACTGGAGGCCG
ATGACTCTGTTCGCCCACCCACCACACTTGTGCCCCCTGACGACAGCCAA
GAAAACGGTATCAGCCAAGAGAAGGTTCAAATGAGAGAAGCCCATATTGC
GGCCAGCAACGTCAATACTGATTCTCTCCCTGCTTCAGCAGTGCCCAATG
GCAACCAGCAAGAAGCCCAATTTGTGGAGAAGAGCATCGTTATGGATCGC
GATGATTCCAAAATCGGAAAAAACGCTTCTGCTATACCATCGAGCGACGA
GAAAGCCGCGCTTGAATCACTGCCACGAGGTGTGAAAAGAAAAGCAACCA
CTGAATCCAGTGACGATGATGAAAGTGATCTTTCCGAGCTGGAAAGAAAC
ATCACCAAACGATTCACTCCTCATCGAAAGAACGGGGGTAAAACGGGTTG
GACTCGTGACGGAAAGGTCAGGACTGCCGACGAAGAGAAGCCCGCACCCC
TCCCAGTACCAATCCCCAAGTTTCGAAGCGTGTTGCCACCAATTCACTAC
GACAAACACGACCGGGTAGACATGGATAAAGAGAAAGAGAGCAGCCGTCG
CGACGGCAGTTCGCCGGCTGTCTCTGACCCTGAAGATTCGGAGAGTGAAA
GTCACAAGGAAAAATATTCGGGAGAGGGTTCGAATGAAATTGAGAGCTCG
AAACCGTATGCTGGGACAGACATAGTCGAACAGTGGGATGAGAAGGAGGT
TGTTGGTCAAAAACGGTCGGTCAAAAAGCTTGCCCAGGAAAGGAGAAGGC
CGGCGAAACGACAACGGTTTGAAGATCTCGAAACAATCGAGGTTAAGAAA
GAATCAAAGCCAGATGACCTGGAATCTGACCAAAGCGATGATGAAGACGA
AGACGGTGAGAAGCCAAAATCTCGTCAACTGTCAGATGTTGAGAGTCCAA
CTCTTCCGTTCCTCAAGGTTGACTCTGTGTTGTTAGACACCCGAATTCCG
CGGCGAAAAAAGATCGCCGATCCCAATGGAAGAGAGACACTGGCATGCTA
G

protein sequence of Gvermi13895.t1

>Gvermi13895.t1 ID=Gvermi13895.t1|Name=Gvermi13895.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=667bp
MRRQHPCDSCARVGKVQVSQYRCPACLRCSCSLACVKDHKLHYSCSGVRD
KAAPVPKRLYDEHNLISDYALLEEAKRAKDQASHNRVKNFYNPRAPTPVH
DPIPKHKQRIMGREAAKRGIDLRFMPNMFYRHRVNTSHVKPVDYSKAQQH
NGVASFDGFERRFDKIMVWRVDVQFSGTDGGTRLVEVRDLDEEANMNHVL
ERAVKSLHIRNEPRLNGAVDPYLHYSGLSGNQLNAYIKNEISLGARRAQP
TSLPDFPKYKRRKIVDGRVSLGHLELDTRGFILVDTDKTLRESLYSALVV
EYPILYIAPKGSEEDKQLQQATKSLFDKPELEADDSVRPPTTLVPPDDSQ
ENGISQEKVQMREAHIAASNVNTDSLPASAVPNGNQQEAQFVEKSIVMDR
DDSKIGKNASAIPSSDEKAALESLPRGVKRKATTESSDDDESDLSELERN
ITKRFTPHRKNGGKTGWTRDGKVRTADEEKPAPLPVPIPKFRSVLPPIHY
DKHDRVDMDKEKESSRRDGSSPAVSDPEDSESESHKEKYSGEGSNEIESS
KPYAGTDIVEQWDEKEVVGQKRSVKKLAQERRRPAKRQRFEDLETIEVKK
ESKPDDLESDQSDDEDEDGEKPKSRQLSDVESPTLPFLKVDSVLLDTRIP
RRKKIADPNGRETLAC*

mRNA from alignment at ScGOVlb_647:747761..749761-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13895.t1 ID=Gvermi13895.t1|Name=Gvermi13895.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2001bp|location=Sequence derived from alignment at ScGOVlb_647:747761..749761- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTCGCCAACATCCGTGCGACTCGTGCGCCCGCGTCGGAAAGGTGCA
GGTTTCGCAGTATCGCTGCCCGGCCTGTCTGCGCTGCTCCTGCTCGCTCG
CCTGCGTCAAGGATCACAAGCTGCACTACAGCTGCTCTGGCGTTCGCGAT
AAGGCCGCCCCAGTCCCGAAGCGCCTCTATGACGAACACAATTTAATCAG
TGACTACGCTTTGCTCGAGGAGGCAAAGCGCGCAAAGGACCAAGCCAGTC
ACAACCGCGTCAAGAATTTTTACAATCCACGCGCCCCCACGCCCGTGCAT
GACCCCATTCCCAAACATAAGCAACGCATCATGGGGCGCGAGGCCGCCAA
GCGCGGCATTGACCTGCGCTTCATGCCCAATATGTTCTACCGCCACCGAG
TCAACACCTCGCACGTCAAGCCTGTCGACTACTCCAAAGCACAACAACAC
AATGGCGTCGCATCCTTCGACGGCTTTGAGCGTCGCTTTGACAAAATCAT
GGTGTGGCGAGTAGACGTTCAATTTTCTGGCACCGACGGCGGGACAAGGC
TTGTCGAGGTCCGCGACCTCGACGAAGAGGCCAACATGAACCATGTGCTC
GAGCGAGCCGTCAAATCTCTCCACATTCGAAATGAGCCTCGATTGAACGG
AGCCGTCGATCCGTATCTGCATTACTCCGGACTTTCGGGAAACCAGCTCA
ATGCCTACATCAAGAATGAGATCAGCCTGGGAGCCCGAAGGGCGCAGCCC
ACAAGCCTCCCAGACTTTCCCAAGTACAAACGCCGAAAGATCGTCGATGG
CCGCGTCAGTCTTGGCCATCTGGAGTTGGATACGCGTGGTTTCATCCTTG
TGGACACTGACAAGACATTGCGTGAATCCTTGTACAGCGCCCTGGTTGTA
GAATACCCCATTCTTTACATTGCCCCAAAAGGGTCGGAGGAAGACAAACA
ACTCCAACAAGCCACCAAAAGCCTGTTCGACAAGCCGGAACTGGAGGCCG
ATGACTCTGTTCGCCCACCCACCACACTTGTGCCCCCTGACGACAGCCAA
GAAAACGGTATCAGCCAAGAGAAGGTTCAAATGAGAGAAGCCCATATTGC
GGCCAGCAACGTCAATACTGATTCTCTCCCTGCTTCAGCAGTGCCCAATG
GCAACCAGCAAGAAGCCCAATTTGTGGAGAAGAGCATCGTTATGGATCGC
GATGATTCCAAAATCGGAAAAAACGCTTCTGCTATACCATCGAGCGACGA
GAAAGCCGCGCTTGAATCACTGCCACGAGGTGTGAAAAGAAAAGCAACCA
CTGAATCCAGTGACGATGATGAAAGTGATCTTTCCGAGCTGGAAAGAAAC
ATCACCAAACGATTCACTCCTCATCGAAAGAACGGGGGTAAAACGGGTTG
GACTCGTGACGGAAAGGTCAGGACTGCCGACGAAGAGAAGCCCGCACCCC
TCCCAGTACCAATCCCCAAGTTTCGAAGCGTGTTGCCACCAATTCACTAC
GACAAACACGACCGGGTAGACATGGATAAAGAGAAAGAGAGCAGCCGTCG
CGACGGCAGTTCGCCGGCTGTCTCTGACCCTGAAGATTCGGAGAGTGAAA
GTCACAAGGAAAAATATTCGGGAGAGGGTTCGAATGAAATTGAGAGCTCG
AAACCGTATGCTGGGACAGACATAGTCGAACAGTGGGATGAGAAGGAGGT
TGTTGGTCAAAAACGGTCGGTCAAAAAGCTTGCCCAGGAAAGGAGAAGGC
CGGCGAAACGACAACGGTTTGAAGATCTCGAAACAATCGAGGTTAAGAAA
GAATCAAAGCCAGATGACCTGGAATCTGACCAAAGCGATGATGAAGACGA
AGACGGTGAGAAGCCAAAATCTCGTCAACTGTCAGATGTTGAGAGTCCAA
CTCTTCCGTTCCTCAAGGTTGACTCTGTGTTGTTAGACACCCGAATTCCG
CGGCGAAAAAAGATCGCCGATCCCAATGGAAGAGAGACACTGGCATGCTA
G

Coding sequence (CDS) from alignment at ScGOVlb_647:747761..749761-

>Gvermi13895.t1 ID=Gvermi13895.t1|Name=Gvermi13895.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2001bp|location=Sequence derived from alignment at ScGOVlb_647:747761..749761- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTCGCCAACATCCGTGCGACTCGTGCGCCCGCGTCGGAAAGGTGCA
GGTTTCGCAGTATCGCTGCCCGGCCTGTCTGCGCTGCTCCTGCTCGCTCG
CCTGCGTCAAGGATCACAAGCTGCACTACAGCTGCTCTGGCGTTCGCGAT
AAGGCCGCCCCAGTCCCGAAGCGCCTCTATGACGAACACAATTTAATCAG
TGACTACGCTTTGCTCGAGGAGGCAAAGCGCGCAAAGGACCAAGCCAGTC
ACAACCGCGTCAAGAATTTTTACAATCCACGCGCCCCCACGCCCGTGCAT
GACCCCATTCCCAAACATAAGCAACGCATCATGGGGCGCGAGGCCGCCAA
GCGCGGCATTGACCTGCGCTTCATGCCCAATATGTTCTACCGCCACCGAG
TCAACACCTCGCACGTCAAGCCTGTCGACTACTCCAAAGCACAACAACAC
AATGGCGTCGCATCCTTCGACGGCTTTGAGCGTCGCTTTGACAAAATCAT
GGTGTGGCGAGTAGACGTTCAATTTTCTGGCACCGACGGCGGGACAAGGC
TTGTCGAGGTCCGCGACCTCGACGAAGAGGCCAACATGAACCATGTGCTC
GAGCGAGCCGTCAAATCTCTCCACATTCGAAATGAGCCTCGATTGAACGG
AGCCGTCGATCCGTATCTGCATTACTCCGGACTTTCGGGAAACCAGCTCA
ATGCCTACATCAAGAATGAGATCAGCCTGGGAGCCCGAAGGGCGCAGCCC
ACAAGCCTCCCAGACTTTCCCAAGTACAAACGCCGAAAGATCGTCGATGG
CCGCGTCAGTCTTGGCCATCTGGAGTTGGATACGCGTGGTTTCATCCTTG
TGGACACTGACAAGACATTGCGTGAATCCTTGTACAGCGCCCTGGTTGTA
GAATACCCCATTCTTTACATTGCCCCAAAAGGGTCGGAGGAAGACAAACA
ACTCCAACAAGCCACCAAAAGCCTGTTCGACAAGCCGGAACTGGAGGCCG
ATGACTCTGTTCGCCCACCCACCACACTTGTGCCCCCTGACGACAGCCAA
GAAAACGGTATCAGCCAAGAGAAGGTTCAAATGAGAGAAGCCCATATTGC
GGCCAGCAACGTCAATACTGATTCTCTCCCTGCTTCAGCAGTGCCCAATG
GCAACCAGCAAGAAGCCCAATTTGTGGAGAAGAGCATCGTTATGGATCGC
GATGATTCCAAAATCGGAAAAAACGCTTCTGCTATACCATCGAGCGACGA
GAAAGCCGCGCTTGAATCACTGCCACGAGGTGTGAAAAGAAAAGCAACCA
CTGAATCCAGTGACGATGATGAAAGTGATCTTTCCGAGCTGGAAAGAAAC
ATCACCAAACGATTCACTCCTCATCGAAAGAACGGGGGTAAAACGGGTTG
GACTCGTGACGGAAAGGTCAGGACTGCCGACGAAGAGAAGCCCGCACCCC
TCCCAGTACCAATCCCCAAGTTTCGAAGCGTGTTGCCACCAATTCACTAC
GACAAACACGACCGGGTAGACATGGATAAAGAGAAAGAGAGCAGCCGTCG
CGACGGCAGTTCGCCGGCTGTCTCTGACCCTGAAGATTCGGAGAGTGAAA
GTCACAAGGAAAAATATTCGGGAGAGGGTTCGAATGAAATTGAGAGCTCG
AAACCGTATGCTGGGACAGACATAGTCGAACAGTGGGATGAGAAGGAGGT
TGTTGGTCAAAAACGGTCGGTCAAAAAGCTTGCCCAGGAAAGGAGAAGGC
CGGCGAAACGACAACGGTTTGAAGATCTCGAAACAATCGAGGTTAAGAAA
GAATCAAAGCCAGATGACCTGGAATCTGACCAAAGCGATGATGAAGACGA
AGACGGTGAGAAGCCAAAATCTCGTCAACTGTCAGATGTTGAGAGTCCAA
CTCTTCCGTTCCTCAAGGTTGACTCTGTGTTGTTAGACACCCGAATTCCG
CGGCGAAAAAAGATCGCCGATCCCAATGGAAGAGAGACACTGGCATGCTA
G