Gvermi13887.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13887.t1
Unique NameGvermi13887.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length476
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:651206..652735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708474.1
Preferred nameSTK38
PFAMsPkinase,Pkinase_C
Max annot lvl2759|Eukaryota
KEGG koko:K00870,ko:K08286,ko:K08790,ko:K20069
GOsGO:0000003,GO:0000131,GO:0000166,GO:0000287,GO:0000902,GO:0000904,GO:0000920,GO:0001411,GO:0001558,GO:0001932,GO:0001933,GO:0002009,GO:0002165,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0005938,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006469,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007114,GO:0007117,GO:0007118,GO:0007154,GO:0007163,GO:0007165,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007455,GO:0007469,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008037,GO:0008038,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008360,GO:0008544,GO:0009266,GO:0009267,GO:0009268,GO:0009272,GO:0009408,GO:0009605,GO:0009607,GO:0009628,GO:0009651,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009892,GO:0009913,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010468,GO:0010494,GO:0010556,GO:0010563,GO:0010570,GO:0010605,GO:0010646,GO:0010648,GO:0010769,GO:0010975,GO:0015629,GO:0015630,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016358,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019954,GO:0022008,GO:0022414,GO:0022416,GO:0022603,GO:0022604,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030100,GO:0030154,GO:0030182,GO:0030308,GO:0030424,GO:0030425,GO:0030427,GO:0030428,GO:0030447,GO:0030554,GO:0030855,GO:0030865,GO:0030866,GO:0030950,GO:0030952,GO:0031175,GO:0031323,GO:0031324,GO:0031326,GO:0031344,GO:0031399,GO:0031400,GO:0031435,GO:0031505,GO:0031579,GO:0031667,GO:0031668,GO:0031669,GO:0032065,GO:0032153,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032505,GO:0032507,GO:0032553,GO:0032555,GO:0032559,GO:0032878,GO:0032879,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033554,GO:0033673,GO:0034605,GO:0034613,GO:0035107,GO:0035114,GO:0035120,GO:0035214,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0035556,GO:0035639,GO:0035690,GO:0035770,GO:0035838,GO:0036094,GO:0036168,GO:0036170,GO:0036176,GO:0036177,GO:0036178,GO:0036180,GO:0036211,GO:0036244,GO:0036464,GO:0036477,GO:0040007,GO:0040008,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042546,GO:0042594,GO:0042710,GO:0042763,GO:0042764,GO:0042995,GO:0043005,GO:0043086,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043332,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0043900,GO:0043902,GO:0044010,GO:0044011,GO:0044085,GO:0044092,GO:0044182,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044463,GO:0044464,GO:0044764,GO:0045185,GO:0045229,GO:0045595,GO:0045664,GO:0045807,GO:0045859,GO:0045926,GO:0045927,GO:0045936,GO:0046872,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048800,GO:0048812,GO:0048813,GO:0048814,GO:0048856,GO:0048858,GO:0048869,GO:0050764,GO:0050766,GO:0050767,GO:0050773,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051235,GO:0051239,GO:0051246,GO:0051248,GO:0051252,GO:0051285,GO:0051286,GO:0051301,GO:0051338,GO:0051348,GO:0051641,GO:0051651,GO:0051703,GO:0051704,GO:0051716,GO:0051960,GO:0060099,GO:0060100,GO:0060237,GO:0060255,GO:0060284,GO:0060429,GO:0060562,GO:0060627,GO:0061024,GO:0065007,GO:0065008,GO:0065009,GO:0070451,GO:0070593,GO:0070726,GO:0070727,GO:0070887,GO:0071214,GO:0071467,GO:0071470,GO:0071472,GO:0071496,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0071900,GO:0071901,GO:0071940,GO:0071944,GO:0072686,GO:0080090,GO:0080134,GO:0090033,GO:0090605,GO:0090609,GO:0097159,GO:0097248,GO:0097367,GO:0097447,GO:0097458,GO:0099568,GO:0099738,GO:0104004,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:1900190,GO:1900192,GO:1900231,GO:1900233,GO:1900428,GO:1900430,GO:1900431,GO:1900433,GO:1900440,GO:1900442,GO:1900741,GO:1900743,GO:1901265,GO:1901363,GO:1901564,GO:1902531,GO:1902532,GO:1903338,GO:1903506,GO:1905153,GO:1905155,GO:1990904,GO:2000026,GO:2000099,GO:2000100,GO:2000112,GO:2000247,GO:2000769,GO:2000771,GO:2001141
Evalue2.41e-158
EggNOG OGsKOG0605@1|root,KOG0605@2759|Eukaryota
EC2.7.1.37,2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko01000,ko01001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13887Gvermi13887Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 651206..652735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13887.t1Gvermi13887.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 651206..652735 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13887.t1.stop1Gvermi13887.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 651206..651208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13887.t1.CDS1Gvermi13887.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 651206..651785 -
Gvermi13887.t1.CDS2Gvermi13887.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 651888..652735 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13887.t1.exon1Gvermi13887.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 651206..651785 -
Gvermi13887.t1.exon2Gvermi13887.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 651888..652735 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13887.t1.intron1Gvermi13887.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_647 651786..651887 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13887.t1.start1Gvermi13887.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 652733..652735 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13887.t1 ID=Gvermi13887.t1|Name=Gvermi13887.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=476bp
MADTASGPSALRNSSKAELAKRKIEILFSTLAQEREAAKKRAHELEQRLA
TMSIRDSEKDRMRKQHAQREMAFLRERRRPMSEADFDMISIIGRGAFGEV
ILVQHKKSGNHYAMKKLRKADMLRKEQVNHAWSERHVLVAANHPFVCQLC
YAFQNKDYLYLVMEFLPGGDLMTLLIERDTLTEEEARFYVAEMVVAIDTI
HKLGFIHRDVKPDNLLIDKDGHLKLSDFGLCKSYNVDMDALPMSSVEASG
PDSHSTLNNLSMTERAAAWRRNARKQAFSTVGTPDYISCEVLMKRGYNKE
CDYWSLGVVLYEMLVGYPPFYAEDALKTCRKILNWRETLRFPPEANLSWA
AVNLIQSLVCDAKYRLGAKKGIDDFRDHPFFEGIDWDNLSAMKPPFLPEL
RGPTDTRYFEDHKPLPQNGVTQDRQSSRPSYIKEPQAEEFIGFTFKRYNP
TEAPAGRRGGLSSSLFQNPDASIQE*
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spliced messenger RNA

>Gvermi13887.t1 ID=Gvermi13887.t1|Name=Gvermi13887.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at ScGOVlb_647:651206..652735- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACACCGCCTCCGGTCCTTCTGCCTTGCGCAACTCGAGCAAGGC
AGAGCTTGCCAAGCGCAAGATAGAGATTCTGTTTTCCACCCTTGCACAAG
AACGCGAGGCTGCCAAGAAGCGCGCGCATGAGCTCGAACAACGCCTTGCC
ACCATGTCTATCAGGGACAGCGAGAAGGATCGTATGCGCAAACAGCACGC
ACAGCGCGAAATGGCTTTTCTTCGCGAACGCCGCCGCCCCATGTCAGAGG
CCGACTTCGACATGATTAGCATCATCGGCCGCGGGGCTTTTGGCGAAGTC
ATTCTGGTCCAGCACAAGAAGTCGGGCAACCATTATGCCATGAAGAAGCT
CCGTAAGGCAGATATGCTGCGCAAAGAACAGGTAAATCACGCCTGGTCCG
AGCGTCACGTGCTTGTTGCCGCCAATCATCCATTTGTTTGTCAGCTATGT
TACGCGTTTCAAAACAAGGATTATCTATACCTTGTCATGGAGTTTCTTCC
AGGTGGTGATCTCATGACGTTGCTTATTGAAAGAGACACTCTCACAGAAG
AAGAAGCTCGCTTCTATGTTGCCGAAATGGTTGTTGCCATTGACACAATT
CACAAGTTGGGTTTTATTCACCGAGATGTGAAGCCGGATAATCTGCTCAT
CGACAAGGACGGCCATCTCAAACTCAGCGATTTTGGACTGTGCAAGAGCT
ACAACGTTGACATGGATGCCTTGCCCATGTCAAGTGTCGAAGCGTCCGGC
CCCGATTCGCACTCAACTCTCAACAATCTTTCCATGACCGAAAGAGCGGC
TGCTTGGAGACGAAACGCCAGAAAACAGGCATTTTCAACCGTTGGCACAC
CGGATTACATTTCTTGTGAAGTTTTGATGAAGAGGGGATATAACAAGGAA
TGTGATTACTGGAGTCTTGGCGTTGTCTTGTACGAAATGCTTGTTGGCTA
TCCTCCTTTCTATGCAGAGGATGCTCTCAAGACATGTCGGAAGATTCTGA
ATTGGCGTGAAACCCTACGCTTCCCGCCGGAAGCAAATCTCAGCTGGGCT
GCGGTAAATCTCATTCAATCTCTGGTTTGTGACGCCAAATACCGACTTGG
TGCAAAGAAAGGCATTGACGATTTCCGGGATCACCCGTTCTTCGAAGGCA
TAGATTGGGATAATCTATCTGCAATGAAGCCCCCATTTCTTCCGGAGCTG
CGCGGACCAACTGATACGCGCTACTTTGAAGATCACAAACCTTTGCCGCA
AAACGGTGTCACGCAAGATAGGCAATCCTCTCGGCCATCTTACATCAAGG
AACCACAAGCTGAGGAGTTCATTGGCTTCACGTTTAAGCGATATAACCCA
ACAGAGGCACCAGCGGGACGTCGTGGAGGTTTGTCGTCTTCATTGTTCCA
AAACCCCGATGCATCCATTCAAGAATAG
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protein sequence of Gvermi13887.t1

>Gvermi13887.t1 ID=Gvermi13887.t1|Name=Gvermi13887.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=476bp
MADTASGPSALRNSSKAELAKRKIEILFSTLAQEREAAKKRAHELEQRLA
TMSIRDSEKDRMRKQHAQREMAFLRERRRPMSEADFDMISIIGRGAFGEV
ILVQHKKSGNHYAMKKLRKADMLRKEQVNHAWSERHVLVAANHPFVCQLC
YAFQNKDYLYLVMEFLPGGDLMTLLIERDTLTEEEARFYVAEMVVAIDTI
HKLGFIHRDVKPDNLLIDKDGHLKLSDFGLCKSYNVDMDALPMSSVEASG
PDSHSTLNNLSMTERAAAWRRNARKQAFSTVGTPDYISCEVLMKRGYNKE
CDYWSLGVVLYEMLVGYPPFYAEDALKTCRKILNWRETLRFPPEANLSWA
AVNLIQSLVCDAKYRLGAKKGIDDFRDHPFFEGIDWDNLSAMKPPFLPEL
RGPTDTRYFEDHKPLPQNGVTQDRQSSRPSYIKEPQAEEFIGFTFKRYNP
TEAPAGRRGGLSSSLFQNPDASIQE*
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mRNA from alignment at ScGOVlb_647:651206..652735-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13887.t1 ID=Gvermi13887.t1|Name=Gvermi13887.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at ScGOVlb_647:651206..652735- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACACCGCCTCCGGTCCTTCTGCCTTGCGCAACTCGAGCAAGGC
AGAGCTTGCCAAGCGCAAGATAGAGATTCTGTTTTCCACCCTTGCACAAG
AACGCGAGGCTGCCAAGAAGCGCGCGCATGAGCTCGAACAACGCCTTGCC
ACCATGTCTATCAGGGACAGCGAGAAGGATCGTATGCGCAAACAGCACGC
ACAGCGCGAAATGGCTTTTCTTCGCGAACGCCGCCGCCCCATGTCAGAGG
CCGACTTCGACATGATTAGCATCATCGGCCGCGGGGCTTTTGGCGAAGTC
ATTCTGGTCCAGCACAAGAAGTCGGGCAACCATTATGCCATGAAGAAGCT
CCGTAAGGCAGATATGCTGCGCAAAGAACAGGTAAATCACGCCTGGTCCG
AGCGTCACGTGCTTGTTGCCGCCAATCATCCATTTGTTTGTCAGCTATGT
TACGCGTTTCAAAACAAGGATTATCTATACCTTGTCATGGAGTTTCTTCC
AGGTGGTGATCTCATGACGTTGCTTATTGAAAGAGACACTCTCACAGAAG
AAGAAGCTCGCTTCTATGTTGCCGAAATGGTTGTTGCCATTGACACAATT
CACAAGTTGGGTTTTATTCACCGAGATGTGAAGCCGGATAATCTGCTCAT
CGACAAGGACGGCCATCTCAAACTCAGCGATTTTGGACTGTGCAAGAGCT
ACAACGTTGACATGGATGCCTTGCCCATGTCAAGTGTCGAAGCGTCCGGC
CCCGATTCGCACTCAACTCTCAACAATCTTTCCATGACCGAAAGAGCGGC
TGCTTGGAGACGAAACGCCAGAAAACAGGCATTTTCAACCGTTGGCACGT
GAGTTTTTTTCCAATGGCGTACCGCCCCCAAATCAACCGCTATACGATGA
CATCGTACTAACCCAAACATTACTTCTTCTTCTCCTATGTTTCACGACAG
ACCGGATTACATTTCTTGTGAAGTTTTGATGAAGAGGGGATATAACAAGG
AATGTGATTACTGGAGTCTTGGCGTTGTCTTGTACGAAATGCTTGTTGGC
TATCCTCCTTTCTATGCAGAGGATGCTCTCAAGACATGTCGGAAGATTCT
GAATTGGCGTGAAACCCTACGCTTCCCGCCGGAAGCAAATCTCAGCTGGG
CTGCGGTAAATCTCATTCAATCTCTGGTTTGTGACGCCAAATACCGACTT
GGTGCAAAGAAAGGCATTGACGATTTCCGGGATCACCCGTTCTTCGAAGG
CATAGATTGGGATAATCTATCTGCAATGAAGCCCCCATTTCTTCCGGAGC
TGCGCGGACCAACTGATACGCGCTACTTTGAAGATCACAAACCTTTGCCG
CAAAACGGTGTCACGCAAGATAGGCAATCCTCTCGGCCATCTTACATCAA
GGAACCACAAGCTGAGGAGTTCATTGGCTTCACGTTTAAGCGATATAACC
CAACAGAGGCACCAGCGGGACGTCGTGGAGGTTTGTCGTCTTCATTGTTC
CAAAACCCCGATGCATCCATTCAAGAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:651206..652735-

>Gvermi13887.t1 ID=Gvermi13887.t1|Name=Gvermi13887.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1428bp|location=Sequence derived from alignment at ScGOVlb_647:651206..652735- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACACCGCCTCCGGTCCTTCTGCCTTGCGCAACTCGAGCAAGGC
AGAGCTTGCCAAGCGCAAGATAGAGATTCTGTTTTCCACCCTTGCACAAG
AACGCGAGGCTGCCAAGAAGCGCGCGCATGAGCTCGAACAACGCCTTGCC
ACCATGTCTATCAGGGACAGCGAGAAGGATCGTATGCGCAAACAGCACGC
ACAGCGCGAAATGGCTTTTCTTCGCGAACGCCGCCGCCCCATGTCAGAGG
CCGACTTCGACATGATTAGCATCATCGGCCGCGGGGCTTTTGGCGAAGTC
ATTCTGGTCCAGCACAAGAAGTCGGGCAACCATTATGCCATGAAGAAGCT
CCGTAAGGCAGATATGCTGCGCAAAGAACAGGTAAATCACGCCTGGTCCG
AGCGTCACGTGCTTGTTGCCGCCAATCATCCATTTGTTTGTCAGCTATGT
TACGCGTTTCAAAACAAGGATTATCTATACCTTGTCATGGAGTTTCTTCC
AGGTGGTGATCTCATGACGTTGCTTATTGAAAGAGACACTCTCACAGAAG
AAGAAGCTCGCTTCTATGTTGCCGAAATGGTTGTTGCCATTGACACAATT
CACAAGTTGGGTTTTATTCACCGAGATGTGAAGCCGGATAATCTGCTCAT
CGACAAGGACGGCCATCTCAAACTCAGCGATTTTGGACTGTGCAAGAGCT
ACAACGTTGACATGGATGCCTTGCCCATGTCAAGTGTCGAAGCGTCCGGC
CCCGATTCGCACTCAACTCTCAACAATCTTTCCATGACCGAAAGAGCGGC
TGCTTGGAGACGAAACGCCAGAAAACAGGCATTTTCAACCGTTGGCACAC
CGGATTACATTTCTTGTGAAGTTTTGATGAAGAGGGGATATAACAAGGAA
TGTGATTACTGGAGTCTTGGCGTTGTCTTGTACGAAATGCTTGTTGGCTA
TCCTCCTTTCTATGCAGAGGATGCTCTCAAGACATGTCGGAAGATTCTGA
ATTGGCGTGAAACCCTACGCTTCCCGCCGGAAGCAAATCTCAGCTGGGCT
GCGGTAAATCTCATTCAATCTCTGGTTTGTGACGCCAAATACCGACTTGG
TGCAAAGAAAGGCATTGACGATTTCCGGGATCACCCGTTCTTCGAAGGCA
TAGATTGGGATAATCTATCTGCAATGAAGCCCCCATTTCTTCCGGAGCTG
CGCGGACCAACTGATACGCGCTACTTTGAAGATCACAAACCTTTGCCGCA
AAACGGTGTCACGCAAGATAGGCAATCCTCTCGGCCATCTTACATCAAGG
AACCACAAGCTGAGGAGTTCATTGGCTTCACGTTTAAGCGATATAACCCA
ACAGAGGCACCAGCGGGACGTCGTGGAGGTTTGTCGTCTTCATTGTTCCA
AAACCCCGATGCATCCATTCAAGAATAG
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