Gvermi13863.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13863.t1
Unique Name	Gvermi13863.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	586

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_647	contig	ScGOVlb_647:451270..453027 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4533.OB10G13530.1
PFAMs	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00408
KEGG ko	ko:K01835
KEGG Reaction	R00959,R01057,R08639
KEGG Pathway	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG Module	M00549
GOs	GO:0000271,GO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005982,GO:0005996,GO:0006006,GO:0006012,GO:0006073,GO:0006091,GO:0006112,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009250,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009581,GO:0009582,GO:0009590,GO:0009605,GO:0009628,GO:0009629,GO:0009941,GO:0009987,GO:0010319,GO:0015980,GO:0016051,GO:0016052,GO:0016853,GO:0016866,GO:0016868,GO:0019252,GO:0019318,GO:0019320,GO:0019388,GO:0031967,GO:0031975,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0048046,GO:0050896,GO:0051606,GO:0055114,GO:0071704,GO:1901575,GO:1901576
Evalue	9.99e-233
EggNOG OGs	COG0033@1\|root,KOG0625@2759\|Eukaryota,37R89@33090\|Viridiplantae,3GETM@35493\|Streptophyta,3KX9J@4447\|Liliopsida,3I7I4@38820\|Poales
EC	5.4.2.2
Description	Phosphoglucomutase/phosphomannomutase, C-terminal domain
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13863	Gvermi13863	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_647 451270..453027 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13863.t1.start1	Gvermi13863.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_647 451270..451272 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13863.t1.CDS1	Gvermi13863.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_647 451270..453027 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13863.t1.exon1	Gvermi13863.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_647 451270..453027 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13863.t1.stop1	Gvermi13863.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_647 453025..453027 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13863.t1	Gvermi13863.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_647 451270..453027 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_647:451270..453027+
coding sequence from alignment at ScGOVlb_647:451270..453027+

mRNA sequence

>Gvermi13863.t1 ID=Gvermi13863.t1|Name=Gvermi13863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=586bp
MTAYFAVSSVPTAPIDGQKTGTSGLRKKVSVFQQPNYLHNWVQSLFSSLP
DLNDATIALGGDGRYWNTTAIRIICRIAAANGVARVKVGHNGILCTPAMS
AVIRAHALYGGIILTASHNPGGPDEDFGIKYNVSNGGPAPETVTARIFAN
TKSISEYRYATLPDAAPDADPFASVDLSVKASTTFTNQSDASTFTIEVID
SADDYVNLLRSMFDFEKLAALFARPRFSFLFDAMNGVTGPYGRRIFVDML
RGKPQCVMRAEPLEDFGGAHPDPNLTYAAELVARCDPRRNADAPVMGAAS
DGDGDRNMILGRGFFVTPSDSVAVIAANAAHAIPYFANGVKGVARSMPTA
GALDRVAEAMGLELHEVPTGWKYFGNLMDAGRAQICGEESFGTGSDHVRE
KDGIFAILAWLSIIAHQSEGKDEVVSIEDIVTSHWKTFGRNYFSRYDYEQ
VDSDAANAMMRHLDELQSKMNRERASEDAPMTIDADFGTKVAVADNFSYV
DPVDGSEAKGQGRRFVFTDGSRVIFRLSGTGSSGATIRMYVERYESDEAA
QKEDAQVALKPFIDLALKVSKLQEFTGRDKPTVIT*

spliced messenger RNA

>Gvermi13863.t1 ID=Gvermi13863.t1|Name=Gvermi13863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1758bp|location=Sequence derived from alignment at ScGOVlb_647:451270..453027+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCTTACTTCGCCGTATCTTCCGTCCCCACGGCCCCCATCGATGG
CCAGAAAACCGGCACCTCCGGCCTGCGAAAGAAGGTCTCCGTTTTTCAGC
AGCCCAACTACCTGCACAACTGGGTTCAGTCCCTCTTTTCATCCCTGCCT
GACCTCAATGATGCCACCATCGCCCTGGGTGGCGACGGCCGCTACTGGAA
TACCACCGCCATCCGCATCATCTGCCGCATCGCCGCCGCCAACGGCGTCG
CGCGCGTCAAGGTTGGCCACAATGGCATTCTGTGCACCCCGGCCATGAGC
GCCGTCATCCGCGCCCACGCTCTGTACGGCGGGATCATCCTCACCGCCAG
CCACAACCCGGGCGGCCCCGACGAAGACTTTGGAATCAAGTACAACGTCT
CCAACGGCGGCCCGGCCCCGGAGACCGTCACCGCCCGCATCTTCGCCAAC
ACCAAGTCCATCTCCGAGTACCGCTACGCCACGCTGCCGGACGCTGCGCC
GGACGCCGACCCGTTTGCCTCCGTCGATCTCTCCGTCAAGGCGTCCACCA
CGTTCACCAACCAATCCGACGCCTCCACGTTCACCATCGAGGTCATCGAC
TCAGCCGACGACTACGTCAACTTGCTGCGCTCCATGTTCGATTTTGAGAA
GCTCGCCGCCCTCTTCGCGCGCCCGCGCTTCTCGTTTCTGTTCGACGCCA
TGAACGGCGTCACGGGGCCGTACGGCCGCCGTATCTTCGTCGACATGCTG
CGCGGCAAGCCGCAGTGCGTCATGCGCGCCGAGCCGCTGGAGGACTTTGG
CGGCGCACATCCGGACCCCAACCTCACGTACGCCGCAGAGCTGGTAGCCC
GCTGCGACCCGCGGCGGAACGCGGACGCGCCGGTCATGGGCGCCGCGTCG
GACGGGGACGGCGACCGCAACATGATCCTCGGCCGCGGCTTCTTCGTCAC
GCCCTCCGACTCGGTTGCCGTCATCGCCGCCAACGCCGCGCACGCCATCC
CGTACTTCGCCAACGGCGTGAAGGGCGTGGCGCGCAGCATGCCCACCGCG
GGCGCGCTCGACCGCGTCGCCGAGGCCATGGGCCTGGAGCTGCACGAGGT
GCCCACGGGCTGGAAGTACTTTGGCAACCTCATGGACGCCGGCCGTGCCC
AGATTTGCGGCGAGGAGTCCTTTGGAACTGGCTCGGACCACGTGCGGGAG
AAGGACGGCATCTTCGCCATTCTGGCTTGGCTCTCCATCATTGCCCACCA
GAGCGAGGGCAAGGATGAAGTGGTCAGCATCGAGGATATTGTCACGTCGC
ACTGGAAGACTTTTGGCAGAAACTACTTTTCTAGGTACGATTATGAGCAG
GTGGACAGCGACGCCGCCAATGCCATGATGCGCCATCTCGATGAGTTGCA
GTCAAAGATGAACCGGGAAAGGGCCTCTGAGGATGCGCCGATGACTATTG
ACGCTGATTTTGGCACTAAAGTTGCAGTGGCGGATAACTTTTCTTACGTG
GACCCCGTAGATGGGTCGGAGGCCAAAGGCCAAGGACGTCGGTTTGTGTT
TACCGATGGCAGTCGGGTGATTTTCAGACTGTCCGGAACGGGTTCTTCCG
GCGCGACGATCCGCATGTATGTGGAGCGGTATGAGAGTGATGAAGCTGCT
CAGAAAGAGGATGCGCAGGTGGCGCTCAAGCCGTTCATTGACCTTGCGCT
GAAGGTTTCTAAATTACAAGAGTTTACGGGTCGCGACAAGCCGACTGTCA
TTACTTGA

protein sequence of Gvermi13863.t1

>Gvermi13863.t1 ID=Gvermi13863.t1|Name=Gvermi13863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=586bp
MTAYFAVSSVPTAPIDGQKTGTSGLRKKVSVFQQPNYLHNWVQSLFSSLP
DLNDATIALGGDGRYWNTTAIRIICRIAAANGVARVKVGHNGILCTPAMS
AVIRAHALYGGIILTASHNPGGPDEDFGIKYNVSNGGPAPETVTARIFAN
TKSISEYRYATLPDAAPDADPFASVDLSVKASTTFTNQSDASTFTIEVID
SADDYVNLLRSMFDFEKLAALFARPRFSFLFDAMNGVTGPYGRRIFVDML
RGKPQCVMRAEPLEDFGGAHPDPNLTYAAELVARCDPRRNADAPVMGAAS
DGDGDRNMILGRGFFVTPSDSVAVIAANAAHAIPYFANGVKGVARSMPTA
GALDRVAEAMGLELHEVPTGWKYFGNLMDAGRAQICGEESFGTGSDHVRE
KDGIFAILAWLSIIAHQSEGKDEVVSIEDIVTSHWKTFGRNYFSRYDYEQ
VDSDAANAMMRHLDELQSKMNRERASEDAPMTIDADFGTKVAVADNFSYV
DPVDGSEAKGQGRRFVFTDGSRVIFRLSGTGSSGATIRMYVERYESDEAA
QKEDAQVALKPFIDLALKVSKLQEFTGRDKPTVIT*

mRNA from alignment at ScGOVlb_647:451270..453027+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13863.t1 ID=Gvermi13863.t1|Name=Gvermi13863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1758bp|location=Sequence derived from alignment at ScGOVlb_647:451270..453027+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCTTACTTCGCCGTATCTTCCGTCCCCACGGCCCCCATCGATGG
CCAGAAAACCGGCACCTCCGGCCTGCGAAAGAAGGTCTCCGTTTTTCAGC
AGCCCAACTACCTGCACAACTGGGTTCAGTCCCTCTTTTCATCCCTGCCT
GACCTCAATGATGCCACCATCGCCCTGGGTGGCGACGGCCGCTACTGGAA
TACCACCGCCATCCGCATCATCTGCCGCATCGCCGCCGCCAACGGCGTCG
CGCGCGTCAAGGTTGGCCACAATGGCATTCTGTGCACCCCGGCCATGAGC
GCCGTCATCCGCGCCCACGCTCTGTACGGCGGGATCATCCTCACCGCCAG
CCACAACCCGGGCGGCCCCGACGAAGACTTTGGAATCAAGTACAACGTCT
CCAACGGCGGCCCGGCCCCGGAGACCGTCACCGCCCGCATCTTCGCCAAC
ACCAAGTCCATCTCCGAGTACCGCTACGCCACGCTGCCGGACGCTGCGCC
GGACGCCGACCCGTTTGCCTCCGTCGATCTCTCCGTCAAGGCGTCCACCA
CGTTCACCAACCAATCCGACGCCTCCACGTTCACCATCGAGGTCATCGAC
TCAGCCGACGACTACGTCAACTTGCTGCGCTCCATGTTCGATTTTGAGAA
GCTCGCCGCCCTCTTCGCGCGCCCGCGCTTCTCGTTTCTGTTCGACGCCA
TGAACGGCGTCACGGGGCCGTACGGCCGCCGTATCTTCGTCGACATGCTG
CGCGGCAAGCCGCAGTGCGTCATGCGCGCCGAGCCGCTGGAGGACTTTGG
CGGCGCACATCCGGACCCCAACCTCACGTACGCCGCAGAGCTGGTAGCCC
GCTGCGACCCGCGGCGGAACGCGGACGCGCCGGTCATGGGCGCCGCGTCG
GACGGGGACGGCGACCGCAACATGATCCTCGGCCGCGGCTTCTTCGTCAC
GCCCTCCGACTCGGTTGCCGTCATCGCCGCCAACGCCGCGCACGCCATCC
CGTACTTCGCCAACGGCGTGAAGGGCGTGGCGCGCAGCATGCCCACCGCG
GGCGCGCTCGACCGCGTCGCCGAGGCCATGGGCCTGGAGCTGCACGAGGT
GCCCACGGGCTGGAAGTACTTTGGCAACCTCATGGACGCCGGCCGTGCCC
AGATTTGCGGCGAGGAGTCCTTTGGAACTGGCTCGGACCACGTGCGGGAG
AAGGACGGCATCTTCGCCATTCTGGCTTGGCTCTCCATCATTGCCCACCA
GAGCGAGGGCAAGGATGAAGTGGTCAGCATCGAGGATATTGTCACGTCGC
ACTGGAAGACTTTTGGCAGAAACTACTTTTCTAGGTACGATTATGAGCAG
GTGGACAGCGACGCCGCCAATGCCATGATGCGCCATCTCGATGAGTTGCA
GTCAAAGATGAACCGGGAAAGGGCCTCTGAGGATGCGCCGATGACTATTG
ACGCTGATTTTGGCACTAAAGTTGCAGTGGCGGATAACTTTTCTTACGTG
GACCCCGTAGATGGGTCGGAGGCCAAAGGCCAAGGACGTCGGTTTGTGTT
TACCGATGGCAGTCGGGTGATTTTCAGACTGTCCGGAACGGGTTCTTCCG
GCGCGACGATCCGCATGTATGTGGAGCGGTATGAGAGTGATGAAGCTGCT
CAGAAAGAGGATGCGCAGGTGGCGCTCAAGCCGTTCATTGACCTTGCGCT
GAAGGTTTCTAAATTACAAGAGTTTACGGGTCGCGACAAGCCGACTGTCA
TTACTTGA

Coding sequence (CDS) from alignment at ScGOVlb_647:451270..453027+

>Gvermi13863.t1 ID=Gvermi13863.t1|Name=Gvermi13863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1758bp|location=Sequence derived from alignment at ScGOVlb_647:451270..453027+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCTTACTTCGCCGTATCTTCCGTCCCCACGGCCCCCATCGATGG
CCAGAAAACCGGCACCTCCGGCCTGCGAAAGAAGGTCTCCGTTTTTCAGC
AGCCCAACTACCTGCACAACTGGGTTCAGTCCCTCTTTTCATCCCTGCCT
GACCTCAATGATGCCACCATCGCCCTGGGTGGCGACGGCCGCTACTGGAA
TACCACCGCCATCCGCATCATCTGCCGCATCGCCGCCGCCAACGGCGTCG
CGCGCGTCAAGGTTGGCCACAATGGCATTCTGTGCACCCCGGCCATGAGC
GCCGTCATCCGCGCCCACGCTCTGTACGGCGGGATCATCCTCACCGCCAG
CCACAACCCGGGCGGCCCCGACGAAGACTTTGGAATCAAGTACAACGTCT
CCAACGGCGGCCCGGCCCCGGAGACCGTCACCGCCCGCATCTTCGCCAAC
ACCAAGTCCATCTCCGAGTACCGCTACGCCACGCTGCCGGACGCTGCGCC
GGACGCCGACCCGTTTGCCTCCGTCGATCTCTCCGTCAAGGCGTCCACCA
CGTTCACCAACCAATCCGACGCCTCCACGTTCACCATCGAGGTCATCGAC
TCAGCCGACGACTACGTCAACTTGCTGCGCTCCATGTTCGATTTTGAGAA
GCTCGCCGCCCTCTTCGCGCGCCCGCGCTTCTCGTTTCTGTTCGACGCCA
TGAACGGCGTCACGGGGCCGTACGGCCGCCGTATCTTCGTCGACATGCTG
CGCGGCAAGCCGCAGTGCGTCATGCGCGCCGAGCCGCTGGAGGACTTTGG
CGGCGCACATCCGGACCCCAACCTCACGTACGCCGCAGAGCTGGTAGCCC
GCTGCGACCCGCGGCGGAACGCGGACGCGCCGGTCATGGGCGCCGCGTCG
GACGGGGACGGCGACCGCAACATGATCCTCGGCCGCGGCTTCTTCGTCAC
GCCCTCCGACTCGGTTGCCGTCATCGCCGCCAACGCCGCGCACGCCATCC
CGTACTTCGCCAACGGCGTGAAGGGCGTGGCGCGCAGCATGCCCACCGCG
GGCGCGCTCGACCGCGTCGCCGAGGCCATGGGCCTGGAGCTGCACGAGGT
GCCCACGGGCTGGAAGTACTTTGGCAACCTCATGGACGCCGGCCGTGCCC
AGATTTGCGGCGAGGAGTCCTTTGGAACTGGCTCGGACCACGTGCGGGAG
AAGGACGGCATCTTCGCCATTCTGGCTTGGCTCTCCATCATTGCCCACCA
GAGCGAGGGCAAGGATGAAGTGGTCAGCATCGAGGATATTGTCACGTCGC
ACTGGAAGACTTTTGGCAGAAACTACTTTTCTAGGTACGATTATGAGCAG
GTGGACAGCGACGCCGCCAATGCCATGATGCGCCATCTCGATGAGTTGCA
GTCAAAGATGAACCGGGAAAGGGCCTCTGAGGATGCGCCGATGACTATTG
ACGCTGATTTTGGCACTAAAGTTGCAGTGGCGGATAACTTTTCTTACGTG
GACCCCGTAGATGGGTCGGAGGCCAAAGGCCAAGGACGTCGGTTTGTGTT
TACCGATGGCAGTCGGGTGATTTTCAGACTGTCCGGAACGGGTTCTTCCG
GCGCGACGATCCGCATGTATGTGGAGCGGTATGAGAGTGATGAAGCTGCT
CAGAAAGAGGATGCGCAGGTGGCGCTCAAGCCGTTCATTGACCTTGCGCT
GAAGGTTTCTAAATTACAAGAGTTTACGGGTCGCGACAAGCCGACTGTCA
TTACTTGA