Gvermi13823.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13823.t1
Unique NameGvermi13823.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length700
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:254244..256343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13823Gvermi13823Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 254244..256343 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13823.t1.stop1Gvermi13823.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 254244..254246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13823.t1.CDS1Gvermi13823.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 254244..256343 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13823.t1.exon1Gvermi13823.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 254244..256343 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13823.t1.start1Gvermi13823.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 256341..256343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13823.t1Gvermi13823.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 254244..256343 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13823.t1 ID=Gvermi13823.t1|Name=Gvermi13823.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=700bp
MLQQAHQSQDHLNLSALPARRKRDWVNTYSTQNAFSHNHVLDMFDLYASQ
CGLKRDDHLPNWQPTASFPYRLRNLGMEFRRQVTGAFARRIGYENLLCVP
SADACLSVAEQSECTKNAMDSAIKMIVGAVLSDETCRVYARVPFLLRADV
AEEIFNLNMNCQRDDERPVYIAVAVKRRSVETRGSAVIKRACLEKMQKEV
FLWNLLLSQTQGYDARNALVIGLHPKRKKAVASGALPLIPSAAERKHPPS
AVFDKKVWKLALLPLDQVPQRARKNALDALRWRIDVVDEGRSWLMEGVKA
MSKLSTKHASPDVAQAPNPMYALLYTTSDPRLRPNMKSSPIFDWPWGAAK
KQLALELRELTLISGVSRSAAVQAMAKGIPNDYSHYDVTAEALGSKSLLT
TQILVKSKPQYKGPVVTPRIIPHNRSNWRLLQDFHQQYPQRFSKSGEMLP
NIEQRSFYVDLELASAEHLYADGSKVLADDADANLMQKYGESFDVYPMAP
LVEEALSDALVFMIGCGQVLDGVWKHNVFISDTLDKQGEKQVMLQWLQHM
HESTRALKEPPLVHVWGPEKQLLKQAFHRMPQPFVREIEPLRNFVIMDVH
KIVASSSVSIRGSLTNSIKNVARALQEHGLLDDADGRNSSGGVDNGSDAI
AAALHAVELVKKKEAGSLSEVELVNDIARYNEQDCRDVARIVTYLRKNH*
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spliced messenger RNA

>Gvermi13823.t1 ID=Gvermi13823.t1|Name=Gvermi13823.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2100bp|location=Sequence derived from alignment at ScGOVlb_647:254244..256343- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCAGCAAGCGCATCAGTCTCAGGACCACCTCAATCTCTCCGCCCT
GCCGGCGCGCAGGAAGAGAGACTGGGTCAATACCTACTCCACGCAGAATG
CTTTCAGCCACAATCATGTCCTGGACATGTTTGACCTGTACGCCTCGCAG
TGCGGCCTCAAACGCGACGACCACCTGCCAAACTGGCAACCCACCGCTTC
CTTTCCGTACAGGCTGCGCAACCTCGGCATGGAGTTCCGCCGCCAGGTCA
CGGGCGCCTTTGCGCGCCGCATCGGCTACGAGAACCTCCTGTGCGTCCCG
TCCGCCGACGCCTGTCTGAGCGTTGCCGAACAGAGCGAGTGCACCAAGAA
CGCCATGGACTCTGCCATAAAAATGATTGTCGGAGCCGTCCTCTCCGACG
AGACGTGCAGAGTGTATGCGCGCGTCCCCTTCCTGCTTCGCGCCGACGTT
GCCGAGGAAATCTTCAATCTGAACATGAACTGCCAGCGTGACGACGAACG
GCCCGTTTACATAGCAGTTGCTGTCAAACGCCGTTCCGTCGAGACGAGGG
GGTCGGCTGTCATAAAGAGAGCCTGTCTGGAGAAAATGCAGAAGGAGGTC
TTCCTGTGGAACTTGTTGCTGTCGCAGACGCAGGGATACGATGCGCGCAA
CGCACTCGTCATTGGGTTACACCCCAAGCGCAAGAAGGCCGTTGCATCCG
GCGCGCTACCTCTCATACCATCGGCGGCGGAGAGAAAACACCCGCCAAGC
GCTGTGTTTGACAAGAAGGTGTGGAAGCTGGCTTTGCTTCCGCTCGATCA
AGTGCCCCAACGCGCCCGCAAAAACGCGTTGGACGCCTTGAGGTGGCGCA
TTGACGTGGTGGACGAGGGCCGGTCATGGCTCATGGAGGGCGTCAAGGCA
ATGTCCAAGCTGTCCACCAAACATGCCTCACCAGACGTCGCGCAGGCCCC
CAATCCTATGTATGCGCTTTTGTACACAACGTCTGACCCGCGCTTACGGC
CAAACATGAAGAGCTCCCCGATTTTCGACTGGCCGTGGGGGGCCGCAAAG
AAGCAACTTGCGCTCGAACTCCGCGAGCTCACCTTAATTTCCGGCGTGAG
CAGATCTGCCGCTGTCCAAGCAATGGCCAAAGGTATTCCAAACGATTACT
CGCACTATGACGTGACCGCAGAGGCCCTTGGTTCCAAATCCTTGTTGACA
ACGCAAATCCTCGTAAAGAGCAAGCCTCAGTACAAGGGCCCGGTGGTGAC
GCCCAGAATCATCCCACACAACAGATCGAACTGGAGGCTTCTACAAGATT
TTCACCAGCAGTACCCGCAACGTTTCAGCAAAAGCGGCGAAATGCTGCCA
AACATCGAACAGAGGTCTTTTTACGTGGACTTGGAGCTTGCCTCAGCGGA
GCACTTGTACGCCGACGGCTCCAAAGTTCTAGCGGACGACGCGGACGCAA
ATCTCATGCAAAAGTACGGAGAATCGTTTGATGTGTACCCCATGGCCCCG
TTGGTTGAGGAGGCGCTCTCAGACGCGCTGGTGTTCATGATTGGCTGCGG
TCAGGTTTTGGACGGCGTGTGGAAACACAACGTCTTCATTTCTGACACGC
TTGATAAACAAGGTGAAAAGCAAGTGATGCTGCAGTGGCTGCAACACATG
CATGAGTCGACCCGTGCTCTGAAAGAGCCACCGTTGGTGCACGTGTGGGG
ACCGGAGAAGCAGCTATTGAAACAAGCGTTCCATCGCATGCCTCAGCCGT
TCGTCCGCGAGATAGAGCCTCTCCGAAACTTTGTTATCATGGACGTACAC
AAAATCGTGGCGAGTTCTAGCGTATCCATCCGCGGGAGCTTGACCAATTC
CATCAAAAACGTGGCAAGAGCTCTGCAGGAGCATGGTTTGTTAGATGACG
CGGACGGTAGGAACAGCAGTGGTGGTGTAGATAACGGGTCTGACGCAATA
GCTGCTGCGCTGCATGCAGTGGAACTAGTGAAGAAGAAAGAAGCTGGATC
ACTGTCTGAGGTCGAGCTGGTGAACGATATCGCACGATACAATGAGCAAG
ACTGTCGGGACGTGGCACGCATTGTAACATATTTGAGAAAGAATCATTGA
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protein sequence of Gvermi13823.t1

>Gvermi13823.t1 ID=Gvermi13823.t1|Name=Gvermi13823.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=700bp
MLQQAHQSQDHLNLSALPARRKRDWVNTYSTQNAFSHNHVLDMFDLYASQ
CGLKRDDHLPNWQPTASFPYRLRNLGMEFRRQVTGAFARRIGYENLLCVP
SADACLSVAEQSECTKNAMDSAIKMIVGAVLSDETCRVYARVPFLLRADV
AEEIFNLNMNCQRDDERPVYIAVAVKRRSVETRGSAVIKRACLEKMQKEV
FLWNLLLSQTQGYDARNALVIGLHPKRKKAVASGALPLIPSAAERKHPPS
AVFDKKVWKLALLPLDQVPQRARKNALDALRWRIDVVDEGRSWLMEGVKA
MSKLSTKHASPDVAQAPNPMYALLYTTSDPRLRPNMKSSPIFDWPWGAAK
KQLALELRELTLISGVSRSAAVQAMAKGIPNDYSHYDVTAEALGSKSLLT
TQILVKSKPQYKGPVVTPRIIPHNRSNWRLLQDFHQQYPQRFSKSGEMLP
NIEQRSFYVDLELASAEHLYADGSKVLADDADANLMQKYGESFDVYPMAP
LVEEALSDALVFMIGCGQVLDGVWKHNVFISDTLDKQGEKQVMLQWLQHM
HESTRALKEPPLVHVWGPEKQLLKQAFHRMPQPFVREIEPLRNFVIMDVH
KIVASSSVSIRGSLTNSIKNVARALQEHGLLDDADGRNSSGGVDNGSDAI
AAALHAVELVKKKEAGSLSEVELVNDIARYNEQDCRDVARIVTYLRKNH*
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mRNA from alignment at ScGOVlb_647:254244..256343-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13823.t1 ID=Gvermi13823.t1|Name=Gvermi13823.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2100bp|location=Sequence derived from alignment at ScGOVlb_647:254244..256343- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCAGCAAGCGCATCAGTCTCAGGACCACCTCAATCTCTCCGCCCT
GCCGGCGCGCAGGAAGAGAGACTGGGTCAATACCTACTCCACGCAGAATG
CTTTCAGCCACAATCATGTCCTGGACATGTTTGACCTGTACGCCTCGCAG
TGCGGCCTCAAACGCGACGACCACCTGCCAAACTGGCAACCCACCGCTTC
CTTTCCGTACAGGCTGCGCAACCTCGGCATGGAGTTCCGCCGCCAGGTCA
CGGGCGCCTTTGCGCGCCGCATCGGCTACGAGAACCTCCTGTGCGTCCCG
TCCGCCGACGCCTGTCTGAGCGTTGCCGAACAGAGCGAGTGCACCAAGAA
CGCCATGGACTCTGCCATAAAAATGATTGTCGGAGCCGTCCTCTCCGACG
AGACGTGCAGAGTGTATGCGCGCGTCCCCTTCCTGCTTCGCGCCGACGTT
GCCGAGGAAATCTTCAATCTGAACATGAACTGCCAGCGTGACGACGAACG
GCCCGTTTACATAGCAGTTGCTGTCAAACGCCGTTCCGTCGAGACGAGGG
GGTCGGCTGTCATAAAGAGAGCCTGTCTGGAGAAAATGCAGAAGGAGGTC
TTCCTGTGGAACTTGTTGCTGTCGCAGACGCAGGGATACGATGCGCGCAA
CGCACTCGTCATTGGGTTACACCCCAAGCGCAAGAAGGCCGTTGCATCCG
GCGCGCTACCTCTCATACCATCGGCGGCGGAGAGAAAACACCCGCCAAGC
GCTGTGTTTGACAAGAAGGTGTGGAAGCTGGCTTTGCTTCCGCTCGATCA
AGTGCCCCAACGCGCCCGCAAAAACGCGTTGGACGCCTTGAGGTGGCGCA
TTGACGTGGTGGACGAGGGCCGGTCATGGCTCATGGAGGGCGTCAAGGCA
ATGTCCAAGCTGTCCACCAAACATGCCTCACCAGACGTCGCGCAGGCCCC
CAATCCTATGTATGCGCTTTTGTACACAACGTCTGACCCGCGCTTACGGC
CAAACATGAAGAGCTCCCCGATTTTCGACTGGCCGTGGGGGGCCGCAAAG
AAGCAACTTGCGCTCGAACTCCGCGAGCTCACCTTAATTTCCGGCGTGAG
CAGATCTGCCGCTGTCCAAGCAATGGCCAAAGGTATTCCAAACGATTACT
CGCACTATGACGTGACCGCAGAGGCCCTTGGTTCCAAATCCTTGTTGACA
ACGCAAATCCTCGTAAAGAGCAAGCCTCAGTACAAGGGCCCGGTGGTGAC
GCCCAGAATCATCCCACACAACAGATCGAACTGGAGGCTTCTACAAGATT
TTCACCAGCAGTACCCGCAACGTTTCAGCAAAAGCGGCGAAATGCTGCCA
AACATCGAACAGAGGTCTTTTTACGTGGACTTGGAGCTTGCCTCAGCGGA
GCACTTGTACGCCGACGGCTCCAAAGTTCTAGCGGACGACGCGGACGCAA
ATCTCATGCAAAAGTACGGAGAATCGTTTGATGTGTACCCCATGGCCCCG
TTGGTTGAGGAGGCGCTCTCAGACGCGCTGGTGTTCATGATTGGCTGCGG
TCAGGTTTTGGACGGCGTGTGGAAACACAACGTCTTCATTTCTGACACGC
TTGATAAACAAGGTGAAAAGCAAGTGATGCTGCAGTGGCTGCAACACATG
CATGAGTCGACCCGTGCTCTGAAAGAGCCACCGTTGGTGCACGTGTGGGG
ACCGGAGAAGCAGCTATTGAAACAAGCGTTCCATCGCATGCCTCAGCCGT
TCGTCCGCGAGATAGAGCCTCTCCGAAACTTTGTTATCATGGACGTACAC
AAAATCGTGGCGAGTTCTAGCGTATCCATCCGCGGGAGCTTGACCAATTC
CATCAAAAACGTGGCAAGAGCTCTGCAGGAGCATGGTTTGTTAGATGACG
CGGACGGTAGGAACAGCAGTGGTGGTGTAGATAACGGGTCTGACGCAATA
GCTGCTGCGCTGCATGCAGTGGAACTAGTGAAGAAGAAAGAAGCTGGATC
ACTGTCTGAGGTCGAGCTGGTGAACGATATCGCACGATACAATGAGCAAG
ACTGTCGGGACGTGGCACGCATTGTAACATATTTGAGAAAGAATCATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:254244..256343-

>Gvermi13823.t1 ID=Gvermi13823.t1|Name=Gvermi13823.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2100bp|location=Sequence derived from alignment at ScGOVlb_647:254244..256343- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCAGCAAGCGCATCAGTCTCAGGACCACCTCAATCTCTCCGCCCT
GCCGGCGCGCAGGAAGAGAGACTGGGTCAATACCTACTCCACGCAGAATG
CTTTCAGCCACAATCATGTCCTGGACATGTTTGACCTGTACGCCTCGCAG
TGCGGCCTCAAACGCGACGACCACCTGCCAAACTGGCAACCCACCGCTTC
CTTTCCGTACAGGCTGCGCAACCTCGGCATGGAGTTCCGCCGCCAGGTCA
CGGGCGCCTTTGCGCGCCGCATCGGCTACGAGAACCTCCTGTGCGTCCCG
TCCGCCGACGCCTGTCTGAGCGTTGCCGAACAGAGCGAGTGCACCAAGAA
CGCCATGGACTCTGCCATAAAAATGATTGTCGGAGCCGTCCTCTCCGACG
AGACGTGCAGAGTGTATGCGCGCGTCCCCTTCCTGCTTCGCGCCGACGTT
GCCGAGGAAATCTTCAATCTGAACATGAACTGCCAGCGTGACGACGAACG
GCCCGTTTACATAGCAGTTGCTGTCAAACGCCGTTCCGTCGAGACGAGGG
GGTCGGCTGTCATAAAGAGAGCCTGTCTGGAGAAAATGCAGAAGGAGGTC
TTCCTGTGGAACTTGTTGCTGTCGCAGACGCAGGGATACGATGCGCGCAA
CGCACTCGTCATTGGGTTACACCCCAAGCGCAAGAAGGCCGTTGCATCCG
GCGCGCTACCTCTCATACCATCGGCGGCGGAGAGAAAACACCCGCCAAGC
GCTGTGTTTGACAAGAAGGTGTGGAAGCTGGCTTTGCTTCCGCTCGATCA
AGTGCCCCAACGCGCCCGCAAAAACGCGTTGGACGCCTTGAGGTGGCGCA
TTGACGTGGTGGACGAGGGCCGGTCATGGCTCATGGAGGGCGTCAAGGCA
ATGTCCAAGCTGTCCACCAAACATGCCTCACCAGACGTCGCGCAGGCCCC
CAATCCTATGTATGCGCTTTTGTACACAACGTCTGACCCGCGCTTACGGC
CAAACATGAAGAGCTCCCCGATTTTCGACTGGCCGTGGGGGGCCGCAAAG
AAGCAACTTGCGCTCGAACTCCGCGAGCTCACCTTAATTTCCGGCGTGAG
CAGATCTGCCGCTGTCCAAGCAATGGCCAAAGGTATTCCAAACGATTACT
CGCACTATGACGTGACCGCAGAGGCCCTTGGTTCCAAATCCTTGTTGACA
ACGCAAATCCTCGTAAAGAGCAAGCCTCAGTACAAGGGCCCGGTGGTGAC
GCCCAGAATCATCCCACACAACAGATCGAACTGGAGGCTTCTACAAGATT
TTCACCAGCAGTACCCGCAACGTTTCAGCAAAAGCGGCGAAATGCTGCCA
AACATCGAACAGAGGTCTTTTTACGTGGACTTGGAGCTTGCCTCAGCGGA
GCACTTGTACGCCGACGGCTCCAAAGTTCTAGCGGACGACGCGGACGCAA
ATCTCATGCAAAAGTACGGAGAATCGTTTGATGTGTACCCCATGGCCCCG
TTGGTTGAGGAGGCGCTCTCAGACGCGCTGGTGTTCATGATTGGCTGCGG
TCAGGTTTTGGACGGCGTGTGGAAACACAACGTCTTCATTTCTGACACGC
TTGATAAACAAGGTGAAAAGCAAGTGATGCTGCAGTGGCTGCAACACATG
CATGAGTCGACCCGTGCTCTGAAAGAGCCACCGTTGGTGCACGTGTGGGG
ACCGGAGAAGCAGCTATTGAAACAAGCGTTCCATCGCATGCCTCAGCCGT
TCGTCCGCGAGATAGAGCCTCTCCGAAACTTTGTTATCATGGACGTACAC
AAAATCGTGGCGAGTTCTAGCGTATCCATCCGCGGGAGCTTGACCAATTC
CATCAAAAACGTGGCAAGAGCTCTGCAGGAGCATGGTTTGTTAGATGACG
CGGACGGTAGGAACAGCAGTGGTGGTGTAGATAACGGGTCTGACGCAATA
GCTGCTGCGCTGCATGCAGTGGAACTAGTGAAGAAGAAAGAAGCTGGATC
ACTGTCTGAGGTCGAGCTGGTGAACGATATCGCACGATACAATGAGCAAG
ACTGTCGGGACGTGGCACGCATTGTAACATATTTGAGAAAGAATCATTGA
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