Gvermi13822.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13822.t1
Unique NameGvermi13822.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:253204..254001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709296.1
PFAMsUPF0016
Max annot lvl2759|Eukaryota
Evalue8.15e-62
EggNOG OGsCOG2119@1|root,KOG2881@2759|Eukaryota
DescriptionGolgi calcium ion transport
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13822Gvermi13822Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 253204..254001 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13822.t1.start1Gvermi13822.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 253204..253206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13822.t1.CDS1Gvermi13822.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 253204..254001 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13822.t1.exon1Gvermi13822.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 253204..254001 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13822.t1.stop1Gvermi13822.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 253999..254001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13822.t1Gvermi13822.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 253204..254001 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13822.t1 ID=Gvermi13822.t1|Name=Gvermi13822.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=266bp
MLLPRLLLALPPLLSVLVTALPVQPSDHLDAAPMPSLMSFVPQSMRASLA
DDAGFTSAFVQSLLLILACELGDRTFFVAAILAMKSSRLTIWAGALSALA
AMTVLSAAIGKAFPLLLDKRYTSLAAAALFLYFGLQLLRDWWRMRRDADS
ENEELAEVEEELANPDKKPKSSRLPGLPPAFMKSLTMTALAEWGDRSQIA
TIALAASKDIYGVILGGVLGHAICTGLAVVGGRLLASRISEKAVALMGGV
MFVSFAMITAGGYVE*
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spliced messenger RNA

>Gvermi13822.t1 ID=Gvermi13822.t1|Name=Gvermi13822.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=798bp|location=Sequence derived from alignment at ScGOVlb_647:253204..254001+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCTTCCCCGCCTCCTTCTCGCGCTGCCGCCGTTGCTGTCCGTGCT
TGTAACCGCGCTGCCCGTGCAGCCGTCCGACCACCTCGACGCCGCCCCCA
TGCCCTCGCTCATGTCCTTTGTGCCGCAGTCCATGCGCGCCTCGCTGGCC
GATGACGCCGGCTTCACCTCCGCTTTCGTCCAGTCCTTGCTGCTCATTCT
CGCCTGCGAGCTGGGCGACCGCACCTTCTTCGTCGCCGCCATTCTCGCCA
TGAAGTCGTCGCGCCTCACCATCTGGGCCGGCGCCCTGTCGGCGCTGGCC
GCCATGACCGTCCTGTCCGCCGCCATCGGCAAGGCCTTCCCGCTCCTGCT
GGACAAGCGCTACACCTCTTTGGCCGCCGCCGCCCTCTTTTTGTACTTTG
GTCTGCAGCTCCTGCGCGACTGGTGGCGTATGCGCCGCGACGCCGATTCG
GAGAACGAAGAGTTGGCAGAGGTGGAGGAAGAGCTTGCCAACCCGGACAA
GAAGCCCAAGTCTTCGCGACTGCCGGGCCTTCCGCCGGCTTTTATGAAAT
CGCTCACCATGACTGCGCTGGCCGAGTGGGGCGATCGCAGTCAGATCGCC
ACCATCGCCCTTGCCGCGTCCAAAGATATCTATGGCGTCATCCTCGGCGG
CGTGCTCGGCCACGCCATTTGCACAGGCCTCGCTGTCGTGGGAGGTCGCT
TGCTTGCTTCCAGGATATCGGAAAAAGCCGTCGCCCTCATGGGCGGTGTC
ATGTTCGTCTCGTTTGCCATGATAACAGCCGGTGGTTACGTCGAATAA
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protein sequence of Gvermi13822.t1

>Gvermi13822.t1 ID=Gvermi13822.t1|Name=Gvermi13822.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=266bp
MLLPRLLLALPPLLSVLVTALPVQPSDHLDAAPMPSLMSFVPQSMRASLA
DDAGFTSAFVQSLLLILACELGDRTFFVAAILAMKSSRLTIWAGALSALA
AMTVLSAAIGKAFPLLLDKRYTSLAAAALFLYFGLQLLRDWWRMRRDADS
ENEELAEVEEELANPDKKPKSSRLPGLPPAFMKSLTMTALAEWGDRSQIA
TIALAASKDIYGVILGGVLGHAICTGLAVVGGRLLASRISEKAVALMGGV
MFVSFAMITAGGYVE*
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mRNA from alignment at ScGOVlb_647:253204..254001+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13822.t1 ID=Gvermi13822.t1|Name=Gvermi13822.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=798bp|location=Sequence derived from alignment at ScGOVlb_647:253204..254001+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCTTCCCCGCCTCCTTCTCGCGCTGCCGCCGTTGCTGTCCGTGCT
TGTAACCGCGCTGCCCGTGCAGCCGTCCGACCACCTCGACGCCGCCCCCA
TGCCCTCGCTCATGTCCTTTGTGCCGCAGTCCATGCGCGCCTCGCTGGCC
GATGACGCCGGCTTCACCTCCGCTTTCGTCCAGTCCTTGCTGCTCATTCT
CGCCTGCGAGCTGGGCGACCGCACCTTCTTCGTCGCCGCCATTCTCGCCA
TGAAGTCGTCGCGCCTCACCATCTGGGCCGGCGCCCTGTCGGCGCTGGCC
GCCATGACCGTCCTGTCCGCCGCCATCGGCAAGGCCTTCCCGCTCCTGCT
GGACAAGCGCTACACCTCTTTGGCCGCCGCCGCCCTCTTTTTGTACTTTG
GTCTGCAGCTCCTGCGCGACTGGTGGCGTATGCGCCGCGACGCCGATTCG
GAGAACGAAGAGTTGGCAGAGGTGGAGGAAGAGCTTGCCAACCCGGACAA
GAAGCCCAAGTCTTCGCGACTGCCGGGCCTTCCGCCGGCTTTTATGAAAT
CGCTCACCATGACTGCGCTGGCCGAGTGGGGCGATCGCAGTCAGATCGCC
ACCATCGCCCTTGCCGCGTCCAAAGATATCTATGGCGTCATCCTCGGCGG
CGTGCTCGGCCACGCCATTTGCACAGGCCTCGCTGTCGTGGGAGGTCGCT
TGCTTGCTTCCAGGATATCGGAAAAAGCCGTCGCCCTCATGGGCGGTGTC
ATGTTCGTCTCGTTTGCCATGATAACAGCCGGTGGTTACGTCGAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:253204..254001+

>Gvermi13822.t1 ID=Gvermi13822.t1|Name=Gvermi13822.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=798bp|location=Sequence derived from alignment at ScGOVlb_647:253204..254001+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCTTCCCCGCCTCCTTCTCGCGCTGCCGCCGTTGCTGTCCGTGCT
TGTAACCGCGCTGCCCGTGCAGCCGTCCGACCACCTCGACGCCGCCCCCA
TGCCCTCGCTCATGTCCTTTGTGCCGCAGTCCATGCGCGCCTCGCTGGCC
GATGACGCCGGCTTCACCTCCGCTTTCGTCCAGTCCTTGCTGCTCATTCT
CGCCTGCGAGCTGGGCGACCGCACCTTCTTCGTCGCCGCCATTCTCGCCA
TGAAGTCGTCGCGCCTCACCATCTGGGCCGGCGCCCTGTCGGCGCTGGCC
GCCATGACCGTCCTGTCCGCCGCCATCGGCAAGGCCTTCCCGCTCCTGCT
GGACAAGCGCTACACCTCTTTGGCCGCCGCCGCCCTCTTTTTGTACTTTG
GTCTGCAGCTCCTGCGCGACTGGTGGCGTATGCGCCGCGACGCCGATTCG
GAGAACGAAGAGTTGGCAGAGGTGGAGGAAGAGCTTGCCAACCCGGACAA
GAAGCCCAAGTCTTCGCGACTGCCGGGCCTTCCGCCGGCTTTTATGAAAT
CGCTCACCATGACTGCGCTGGCCGAGTGGGGCGATCGCAGTCAGATCGCC
ACCATCGCCCTTGCCGCGTCCAAAGATATCTATGGCGTCATCCTCGGCGG
CGTGCTCGGCCACGCCATTTGCACAGGCCTCGCTGTCGTGGGAGGTCGCT
TGCTTGCTTCCAGGATATCGGAAAAAGCCGTCGCCCTCATGGGCGGTGTC
ATGTTCGTCTCGTTTGCCATGATAACAGCCGGTGGTTACGTCGAATAA
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