Gvermi13342.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13342.t1
Unique NameGvermi13342.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3351contigScGOVlb_3351:10896..11807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13342Gvermi13342Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3351 10896..11807 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13342.t1.stop1Gvermi13342.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3351 10896..10898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13342.t1.CDS1Gvermi13342.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3351 10896..11807 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13342.t1.exon1Gvermi13342.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3351 10896..11807 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13342.t1.start1Gvermi13342.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3351 11805..11807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13342.t1Gvermi13342.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3351 10896..11807 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13342.t1 ID=Gvermi13342.t1|Name=Gvermi13342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=304bp
MIVGGYLDVSNCVNLNSLPAVILCWPQIPDSRKVFIHGSGLSVESREWLE
CYNDSQLIFDNDPEPDGEEENSDKSSSETSDSDTTDDEAMPKSELEVCNE
AILSWAAQAGTLGLEELNLPSEAASRVSAFLVKLNRVKELALSETRLAVA
KRIMEVVALLYEPAYRDEVIHGMVEFMDICLDQPVWVLDQLFLVRAKVQA
RGDRLAQKELGRRVLRLEIVHEHVAEKLASLTWVDSVSVYFRFERELRDR
LDLPVSDISTTFWEHIDVRDEELEAASDAALAVTDEDLVTWLEKWPEWVR
HEY*
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spliced messenger RNA

>Gvermi13342.t1 ID=Gvermi13342.t1|Name=Gvermi13342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=912bp|location=Sequence derived from alignment at ScGOVlb_3351:10896..11807- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGTTGGTGGTTATCTCGATGTAAGCAACTGCGTGAACCTGAATAG
CTTGCCAGCGGTAATTCTTTGTTGGCCCCAGATTCCTGATTCTCGTAAGG
TTTTCATACATGGCTCGGGTCTTTCTGTCGAATCGAGGGAGTGGCTAGAA
TGCTATAATGATTCGCAATTGATATTTGACAACGACCCTGAACCCGATGG
TGAAGAAGAGAACTCCGACAAGAGTAGTTCTGAGACCAGCGATTCTGACA
CAACTGACGACGAGGCCATGCCAAAGAGCGAGCTAGAAGTCTGCAACGAG
GCCATTCTGTCTTGGGCAGCGCAGGCTGGCACTTTAGGTCTCGAGGAATT
AAACCTTCCAAGTGAAGCTGCATCCCGTGTCTCGGCGTTCCTCGTCAAAC
TGAATCGAGTCAAGGAGTTAGCACTCAGCGAAACGCGACTCGCAGTTGCC
AAGCGGATCATGGAGGTTGTTGCGCTGCTTTACGAACCTGCATATCGCGA
CGAGGTAATCCATGGTATGGTCGAGTTCATGGACATCTGCCTTGATCAAC
CGGTTTGGGTTTTGGACCAACTCTTCCTTGTACGCGCAAAAGTACAGGCT
CGTGGCGACCGTTTAGCGCAAAAGGAGCTTGGACGCCGAGTGTTGAGGCT
TGAGATCGTGCACGAGCATGTGGCTGAAAAGCTTGCTTCGCTGACTTGGG
TTGATTCCGTGAGCGTGTACTTTCGGTTTGAGCGCGAGCTTCGTGACAGA
TTGGACTTGCCTGTGAGCGACATTAGCACAACGTTTTGGGAGCACATTGA
CGTTCGCGACGAAGAACTCGAAGCGGCGAGTGATGCTGCGTTGGCTGTGA
CTGACGAGGACTTGGTCACGTGGCTTGAGAAGTGGCCCGAATGGGTTCGA
CATGAGTATTGA
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protein sequence of Gvermi13342.t1

>Gvermi13342.t1 ID=Gvermi13342.t1|Name=Gvermi13342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=304bp
MIVGGYLDVSNCVNLNSLPAVILCWPQIPDSRKVFIHGSGLSVESREWLE
CYNDSQLIFDNDPEPDGEEENSDKSSSETSDSDTTDDEAMPKSELEVCNE
AILSWAAQAGTLGLEELNLPSEAASRVSAFLVKLNRVKELALSETRLAVA
KRIMEVVALLYEPAYRDEVIHGMVEFMDICLDQPVWVLDQLFLVRAKVQA
RGDRLAQKELGRRVLRLEIVHEHVAEKLASLTWVDSVSVYFRFERELRDR
LDLPVSDISTTFWEHIDVRDEELEAASDAALAVTDEDLVTWLEKWPEWVR
HEY*
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mRNA from alignment at ScGOVlb_3351:10896..11807-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13342.t1 ID=Gvermi13342.t1|Name=Gvermi13342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=912bp|location=Sequence derived from alignment at ScGOVlb_3351:10896..11807- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCGTTGGTGGTTATCTCGATGTAAGCAACTGCGTGAACCTGAATAG
CTTGCCAGCGGTAATTCTTTGTTGGCCCCAGATTCCTGATTCTCGTAAGG
TTTTCATACATGGCTCGGGTCTTTCTGTCGAATCGAGGGAGTGGCTAGAA
TGCTATAATGATTCGCAATTGATATTTGACAACGACCCTGAACCCGATGG
TGAAGAAGAGAACTCCGACAAGAGTAGTTCTGAGACCAGCGATTCTGACA
CAACTGACGACGAGGCCATGCCAAAGAGCGAGCTAGAAGTCTGCAACGAG
GCCATTCTGTCTTGGGCAGCGCAGGCTGGCACTTTAGGTCTCGAGGAATT
AAACCTTCCAAGTGAAGCTGCATCCCGTGTCTCGGCGTTCCTCGTCAAAC
TGAATCGAGTCAAGGAGTTAGCACTCAGCGAAACGCGACTCGCAGTTGCC
AAGCGGATCATGGAGGTTGTTGCGCTGCTTTACGAACCTGCATATCGCGA
CGAGGTAATCCATGGTATGGTCGAGTTCATGGACATCTGCCTTGATCAAC
CGGTTTGGGTTTTGGACCAACTCTTCCTTGTACGCGCAAAAGTACAGGCT
CGTGGCGACCGTTTAGCGCAAAAGGAGCTTGGACGCCGAGTGTTGAGGCT
TGAGATCGTGCACGAGCATGTGGCTGAAAAGCTTGCTTCGCTGACTTGGG
TTGATTCCGTGAGCGTGTACTTTCGGTTTGAGCGCGAGCTTCGTGACAGA
TTGGACTTGCCTGTGAGCGACATTAGCACAACGTTTTGGGAGCACATTGA
CGTTCGCGACGAAGAACTCGAAGCGGCGAGTGATGCTGCGTTGGCTGTGA
CTGACGAGGACTTGGTCACGTGGCTTGAGAAGTGGCCCGAATGGGTTCGA
CATGAGTATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3351:10896..11807-

>Gvermi13342.t1 ID=Gvermi13342.t1|Name=Gvermi13342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=912bp|location=Sequence derived from alignment at ScGOVlb_3351:10896..11807- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCGTTGGTGGTTATCTCGATGTAAGCAACTGCGTGAACCTGAATAG
CTTGCCAGCGGTAATTCTTTGTTGGCCCCAGATTCCTGATTCTCGTAAGG
TTTTCATACATGGCTCGGGTCTTTCTGTCGAATCGAGGGAGTGGCTAGAA
TGCTATAATGATTCGCAATTGATATTTGACAACGACCCTGAACCCGATGG
TGAAGAAGAGAACTCCGACAAGAGTAGTTCTGAGACCAGCGATTCTGACA
CAACTGACGACGAGGCCATGCCAAAGAGCGAGCTAGAAGTCTGCAACGAG
GCCATTCTGTCTTGGGCAGCGCAGGCTGGCACTTTAGGTCTCGAGGAATT
AAACCTTCCAAGTGAAGCTGCATCCCGTGTCTCGGCGTTCCTCGTCAAAC
TGAATCGAGTCAAGGAGTTAGCACTCAGCGAAACGCGACTCGCAGTTGCC
AAGCGGATCATGGAGGTTGTTGCGCTGCTTTACGAACCTGCATATCGCGA
CGAGGTAATCCATGGTATGGTCGAGTTCATGGACATCTGCCTTGATCAAC
CGGTTTGGGTTTTGGACCAACTCTTCCTTGTACGCGCAAAAGTACAGGCT
CGTGGCGACCGTTTAGCGCAAAAGGAGCTTGGACGCCGAGTGTTGAGGCT
TGAGATCGTGCACGAGCATGTGGCTGAAAAGCTTGCTTCGCTGACTTGGG
TTGATTCCGTGAGCGTGTACTTTCGGTTTGAGCGCGAGCTTCGTGACAGA
TTGGACTTGCCTGTGAGCGACATTAGCACAACGTTTTGGGAGCACATTGA
CGTTCGCGACGAAGAACTCGAAGCGGCGAGTGATGCTGCGTTGGCTGTGA
CTGACGAGGACTTGGTCACGTGGCTTGAGAAGTGGCCCGAATGGGTTCGA
CATGAGTATTGA
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