Gvermi12940.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12940.t1
Unique NameGvermi12940.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length283
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2242351..2243199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog596320.NEIFL0001_1477
PFAMsCarb_anhydrase
Max annot lvl206351|Neisseriales
KEGG rclassRC02807
KEGG koko:K01674
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Evalue2.57e-37
EggNOG OGsCOG3338@1|root,COG3338@2|Bacteria,1PEA6@1224|Proteobacteria,2VI5K@28216|Betaproteobacteria,2KRCV@206351|Neisseriales
EC4.2.1.1
DescriptionEukaryotic-type carbonic anhydrase
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12940Gvermi12940Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2242351..2243199 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12940.t1.stop1Gvermi12940.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2242351..2242353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12940.t1.CDS1Gvermi12940.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2242351..2243199 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12940.t1.exon1Gvermi12940.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2242351..2243199 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12940.t1.start1Gvermi12940.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2243197..2243199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12940.t1Gvermi12940.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2242351..2243199 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12940.t1 ID=Gvermi12940.t1|Name=Gvermi12940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=283bp
MTLVLFCCLLVLKTLFAETSEVDQLVVHAEVASDYSYDDTSHNGPSHWGT
LTDDAAVCSSGHHQSPINIISNTIQVDIRKSGPRVRPISSFFSFKKGTFN
WALNCEAVGACGRTVFNGKRYDLINLHFHSPSEHTVNGRHYPLEAHMVHK
ASDGSLLVVGTFFTSEPDSELINDGNLLSPPPSVGLSKRSFHSIVDQIVS
DNHKFLVHLPWFIGRGGYCTYQGSLTTPPCSENVIWLISMQKQLADASDI
ALFHSIAGSAQFGNNRPVHPLNDRDVKCFRDL*
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spliced messenger RNA

>Gvermi12940.t1 ID=Gvermi12940.t1|Name=Gvermi12940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=849bp|location=Sequence derived from alignment at ScGOVlb_425:2242351..2243199- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTCGTTCTTTTCTGCTGTTTATTGGTTCTCAAGACCCTTTTTGC
TGAGACGTCCGAAGTTGACCAGCTCGTTGTGCATGCAGAAGTCGCGTCGG
ACTATTCGTATGACGACACTTCTCACAACGGTCCATCTCATTGGGGCACG
CTCACAGATGATGCTGCTGTTTGTTCTTCTGGACACCACCAGAGCCCGAT
AAATATTATTTCCAATACTATTCAAGTAGACATAAGAAAATCAGGGCCCA
GGGTTCGACCAATATCGTCCTTCTTTTCGTTCAAGAAAGGTACCTTTAAT
TGGGCCCTTAATTGCGAAGCCGTCGGCGCATGTGGGCGAACCGTGTTCAA
CGGAAAGCGCTACGATCTCATAAATCTTCATTTCCATTCTCCTAGCGAGC
ACACAGTGAACGGAAGACATTACCCCTTGGAAGCCCATATGGTGCACAAA
GCATCCGACGGCTCCCTTCTTGTCGTGGGTACATTTTTCACCAGTGAACC
TGATTCTGAACTTATCAATGACGGCAACCTCCTTTCCCCCCCTCCATCTG
TCGGTTTGTCAAAGAGATCATTTCATTCAATCGTTGATCAAATTGTCTCT
GATAATCACAAGTTTCTGGTTCACTTGCCGTGGTTTATTGGTCGTGGCGG
ATACTGCACCTACCAAGGCTCCCTGACAACTCCACCATGCTCTGAAAACG
TCATCTGGTTAATCTCGATGCAGAAGCAGCTCGCCGATGCCAGCGATATA
GCCCTCTTTCATAGCATTGCAGGAAGCGCACAGTTTGGAAACAACCGCCC
TGTGCATCCTCTAAATGACAGGGATGTGAAATGCTTCAGAGACCTGTAA
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protein sequence of Gvermi12940.t1

>Gvermi12940.t1 ID=Gvermi12940.t1|Name=Gvermi12940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=283bp
MTLVLFCCLLVLKTLFAETSEVDQLVVHAEVASDYSYDDTSHNGPSHWGT
LTDDAAVCSSGHHQSPINIISNTIQVDIRKSGPRVRPISSFFSFKKGTFN
WALNCEAVGACGRTVFNGKRYDLINLHFHSPSEHTVNGRHYPLEAHMVHK
ASDGSLLVVGTFFTSEPDSELINDGNLLSPPPSVGLSKRSFHSIVDQIVS
DNHKFLVHLPWFIGRGGYCTYQGSLTTPPCSENVIWLISMQKQLADASDI
ALFHSIAGSAQFGNNRPVHPLNDRDVKCFRDL*
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mRNA from alignment at ScGOVlb_425:2242351..2243199-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12940.t1 ID=Gvermi12940.t1|Name=Gvermi12940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=849bp|location=Sequence derived from alignment at ScGOVlb_425:2242351..2243199- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCTCGTTCTTTTCTGCTGTTTATTGGTTCTCAAGACCCTTTTTGC
TGAGACGTCCGAAGTTGACCAGCTCGTTGTGCATGCAGAAGTCGCGTCGG
ACTATTCGTATGACGACACTTCTCACAACGGTCCATCTCATTGGGGCACG
CTCACAGATGATGCTGCTGTTTGTTCTTCTGGACACCACCAGAGCCCGAT
AAATATTATTTCCAATACTATTCAAGTAGACATAAGAAAATCAGGGCCCA
GGGTTCGACCAATATCGTCCTTCTTTTCGTTCAAGAAAGGTACCTTTAAT
TGGGCCCTTAATTGCGAAGCCGTCGGCGCATGTGGGCGAACCGTGTTCAA
CGGAAAGCGCTACGATCTCATAAATCTTCATTTCCATTCTCCTAGCGAGC
ACACAGTGAACGGAAGACATTACCCCTTGGAAGCCCATATGGTGCACAAA
GCATCCGACGGCTCCCTTCTTGTCGTGGGTACATTTTTCACCAGTGAACC
TGATTCTGAACTTATCAATGACGGCAACCTCCTTTCCCCCCCTCCATCTG
TCGGTTTGTCAAAGAGATCATTTCATTCAATCGTTGATCAAATTGTCTCT
GATAATCACAAGTTTCTGGTTCACTTGCCGTGGTTTATTGGTCGTGGCGG
ATACTGCACCTACCAAGGCTCCCTGACAACTCCACCATGCTCTGAAAACG
TCATCTGGTTAATCTCGATGCAGAAGCAGCTCGCCGATGCCAGCGATATA
GCCCTCTTTCATAGCATTGCAGGAAGCGCACAGTTTGGAAACAACCGCCC
TGTGCATCCTCTAAATGACAGGGATGTGAAATGCTTCAGAGACCTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:2242351..2243199-

>Gvermi12940.t1 ID=Gvermi12940.t1|Name=Gvermi12940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=849bp|location=Sequence derived from alignment at ScGOVlb_425:2242351..2243199- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCTCGTTCTTTTCTGCTGTTTATTGGTTCTCAAGACCCTTTTTGC
TGAGACGTCCGAAGTTGACCAGCTCGTTGTGCATGCAGAAGTCGCGTCGG
ACTATTCGTATGACGACACTTCTCACAACGGTCCATCTCATTGGGGCACG
CTCACAGATGATGCTGCTGTTTGTTCTTCTGGACACCACCAGAGCCCGAT
AAATATTATTTCCAATACTATTCAAGTAGACATAAGAAAATCAGGGCCCA
GGGTTCGACCAATATCGTCCTTCTTTTCGTTCAAGAAAGGTACCTTTAAT
TGGGCCCTTAATTGCGAAGCCGTCGGCGCATGTGGGCGAACCGTGTTCAA
CGGAAAGCGCTACGATCTCATAAATCTTCATTTCCATTCTCCTAGCGAGC
ACACAGTGAACGGAAGACATTACCCCTTGGAAGCCCATATGGTGCACAAA
GCATCCGACGGCTCCCTTCTTGTCGTGGGTACATTTTTCACCAGTGAACC
TGATTCTGAACTTATCAATGACGGCAACCTCCTTTCCCCCCCTCCATCTG
TCGGTTTGTCAAAGAGATCATTTCATTCAATCGTTGATCAAATTGTCTCT
GATAATCACAAGTTTCTGGTTCACTTGCCGTGGTTTATTGGTCGTGGCGG
ATACTGCACCTACCAAGGCTCCCTGACAACTCCACCATGCTCTGAAAACG
TCATCTGGTTAATCTCGATGCAGAAGCAGCTCGCCGATGCCAGCGATATA
GCCCTCTTTCATAGCATTGCAGGAAGCGCACAGTTTGGAAACAACCGCCC
TGTGCATCCTCTAAATGACAGGGATGTGAAATGCTTCAGAGACCTGTAA
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