Gvermi12939.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12939.t1
Unique NameGvermi12939.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2240349..2241224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2711.XP_006483368.1
PFAMsperoxidase
Max annot lvl35493|Streptophyta
KEGG rclassRC00092
KEGG koko:K00434
KEGG ReactionR00644
KEGG Pathwayko00053,ko00480,map00053,map00480
GOsGO:0000003,GO:0000302,GO:0003006,GO:0003674,GO:0003824,GO:0004130,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009791,GO:0009845,GO:0009987,GO:0010154,GO:0010431,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0021700,GO:0022414,GO:0032501,GO:0032502,GO:0032504,GO:0033554,GO:0034599,GO:0042221,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0061458,GO:0070887,GO:0071695,GO:0072593,GO:0090351,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1990748
Evalue9.08e-17
EggNOG OGsCOG0376@1|root,2QU9K@2759|Eukaryota,37SQ3@33090|Viridiplantae,3GDCD@35493|Streptophyta
EC1.11.1.11
DescriptionBelongs to the peroxidase family
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12939Gvermi12939Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2240349..2241224 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12939.t1.start1Gvermi12939.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2240349..2240351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12939.t1.CDS1Gvermi12939.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2240349..2241224 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12939.t1.exon1Gvermi12939.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2240349..2241224 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12939.t1.stop1Gvermi12939.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2241222..2241224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12939.t1Gvermi12939.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2240349..2241224 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12939.t1 ID=Gvermi12939.t1|Name=Gvermi12939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=292bp
MGIRLSVLVLLSATFVFHVAESGGSNCFAAHSEIRRMLEKGMKTNPDLIP
SFSRAAFHDCITATKSKPKSGCNGSLRLNNEITNMNNDGLQPPLDFLRKI
LPTIRNKKCASFADGLQLGAEVAMKVSKGPNVIGRLVKSLAPRKDVDEPD
TVDGELPDKDDSFENLKEFFARKGFNVREMVVANVGGHALGAFVDDADNQ
DKPFTTTETEFNIDYAVNLVQRIDTGVNLEGFHTLNSDLELLENPESVYW
LKYYAGYFGFGYNEALGRMRLRHDYGRFLIKLAQLRGSTLP*
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spliced messenger RNA

>Gvermi12939.t1 ID=Gvermi12939.t1|Name=Gvermi12939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=876bp|location=Sequence derived from alignment at ScGOVlb_425:2240349..2241224+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAATTCGTTTGTCTGTTCTTGTGTTGCTTTCTGCAACCTTTGTCTT
CCATGTTGCTGAGTCCGGCGGTTCGAACTGCTTTGCAGCTCACAGCGAGA
TTCGAAGAATGCTGGAAAAGGGAATGAAGACAAACCCAGATCTAATTCCC
TCTTTTTCTCGTGCTGCTTTTCATGATTGCATCACAGCGACCAAAAGCAA
ACCGAAATCTGGATGCAATGGAAGCCTGCGTCTTAATAATGAGATTACGA
ACATGAATAATGATGGATTGCAACCACCTCTAGATTTCCTCCGTAAGATT
CTGCCCACGATTAGGAATAAGAAGTGTGCGTCGTTCGCGGATGGACTCCA
GCTTGGGGCTGAAGTGGCTATGAAAGTCTCCAAGGGGCCAAATGTTATTG
GGAGGCTGGTAAAAAGTCTGGCGCCTCGTAAGGATGTTGATGAGCCGGAT
ACAGTGGATGGAGAGCTCCCTGACAAGGACGATTCATTTGAAAACCTCAA
AGAGTTCTTTGCAAGAAAAGGATTTAACGTCAGGGAAATGGTGGTTGCAA
ACGTGGGGGGTCACGCTCTTGGGGCATTCGTGGACGATGCAGATAATCAA
GACAAGCCTTTCACAACAACCGAAACGGAATTCAACATTGATTATGCTGT
GAATCTTGTGCAGAGGATTGATACTGGCGTCAACCTTGAAGGATTTCATA
CTTTGAATAGTGACTTGGAACTCTTGGAAAACCCAGAATCCGTGTACTGG
CTCAAGTACTATGCTGGTTATTTTGGATTCGGTTACAATGAAGCGCTCGG
AAGGATGCGACTACGCCATGATTATGGGAGATTTCTTATCAAATTGGCTC
AACTTAGAGGCTCAACCCTCCCGTAA
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protein sequence of Gvermi12939.t1

>Gvermi12939.t1 ID=Gvermi12939.t1|Name=Gvermi12939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=292bp
MGIRLSVLVLLSATFVFHVAESGGSNCFAAHSEIRRMLEKGMKTNPDLIP
SFSRAAFHDCITATKSKPKSGCNGSLRLNNEITNMNNDGLQPPLDFLRKI
LPTIRNKKCASFADGLQLGAEVAMKVSKGPNVIGRLVKSLAPRKDVDEPD
TVDGELPDKDDSFENLKEFFARKGFNVREMVVANVGGHALGAFVDDADNQ
DKPFTTTETEFNIDYAVNLVQRIDTGVNLEGFHTLNSDLELLENPESVYW
LKYYAGYFGFGYNEALGRMRLRHDYGRFLIKLAQLRGSTLP*
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mRNA from alignment at ScGOVlb_425:2240349..2241224+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12939.t1 ID=Gvermi12939.t1|Name=Gvermi12939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=876bp|location=Sequence derived from alignment at ScGOVlb_425:2240349..2241224+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAATTCGTTTGTCTGTTCTTGTGTTGCTTTCTGCAACCTTTGTCTT
CCATGTTGCTGAGTCCGGCGGTTCGAACTGCTTTGCAGCTCACAGCGAGA
TTCGAAGAATGCTGGAAAAGGGAATGAAGACAAACCCAGATCTAATTCCC
TCTTTTTCTCGTGCTGCTTTTCATGATTGCATCACAGCGACCAAAAGCAA
ACCGAAATCTGGATGCAATGGAAGCCTGCGTCTTAATAATGAGATTACGA
ACATGAATAATGATGGATTGCAACCACCTCTAGATTTCCTCCGTAAGATT
CTGCCCACGATTAGGAATAAGAAGTGTGCGTCGTTCGCGGATGGACTCCA
GCTTGGGGCTGAAGTGGCTATGAAAGTCTCCAAGGGGCCAAATGTTATTG
GGAGGCTGGTAAAAAGTCTGGCGCCTCGTAAGGATGTTGATGAGCCGGAT
ACAGTGGATGGAGAGCTCCCTGACAAGGACGATTCATTTGAAAACCTCAA
AGAGTTCTTTGCAAGAAAAGGATTTAACGTCAGGGAAATGGTGGTTGCAA
ACGTGGGGGGTCACGCTCTTGGGGCATTCGTGGACGATGCAGATAATCAA
GACAAGCCTTTCACAACAACCGAAACGGAATTCAACATTGATTATGCTGT
GAATCTTGTGCAGAGGATTGATACTGGCGTCAACCTTGAAGGATTTCATA
CTTTGAATAGTGACTTGGAACTCTTGGAAAACCCAGAATCCGTGTACTGG
CTCAAGTACTATGCTGGTTATTTTGGATTCGGTTACAATGAAGCGCTCGG
AAGGATGCGACTACGCCATGATTATGGGAGATTTCTTATCAAATTGGCTC
AACTTAGAGGCTCAACCCTCCCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:2240349..2241224+

>Gvermi12939.t1 ID=Gvermi12939.t1|Name=Gvermi12939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=876bp|location=Sequence derived from alignment at ScGOVlb_425:2240349..2241224+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAATTCGTTTGTCTGTTCTTGTGTTGCTTTCTGCAACCTTTGTCTT
CCATGTTGCTGAGTCCGGCGGTTCGAACTGCTTTGCAGCTCACAGCGAGA
TTCGAAGAATGCTGGAAAAGGGAATGAAGACAAACCCAGATCTAATTCCC
TCTTTTTCTCGTGCTGCTTTTCATGATTGCATCACAGCGACCAAAAGCAA
ACCGAAATCTGGATGCAATGGAAGCCTGCGTCTTAATAATGAGATTACGA
ACATGAATAATGATGGATTGCAACCACCTCTAGATTTCCTCCGTAAGATT
CTGCCCACGATTAGGAATAAGAAGTGTGCGTCGTTCGCGGATGGACTCCA
GCTTGGGGCTGAAGTGGCTATGAAAGTCTCCAAGGGGCCAAATGTTATTG
GGAGGCTGGTAAAAAGTCTGGCGCCTCGTAAGGATGTTGATGAGCCGGAT
ACAGTGGATGGAGAGCTCCCTGACAAGGACGATTCATTTGAAAACCTCAA
AGAGTTCTTTGCAAGAAAAGGATTTAACGTCAGGGAAATGGTGGTTGCAA
ACGTGGGGGGTCACGCTCTTGGGGCATTCGTGGACGATGCAGATAATCAA
GACAAGCCTTTCACAACAACCGAAACGGAATTCAACATTGATTATGCTGT
GAATCTTGTGCAGAGGATTGATACTGGCGTCAACCTTGAAGGATTTCATA
CTTTGAATAGTGACTTGGAACTCTTGGAAAACCCAGAATCCGTGTACTGG
CTCAAGTACTATGCTGGTTATTTTGGATTCGGTTACAATGAAGCGCTCGG
AAGGATGCGACTACGCCATGATTATGGGAGATTTCTTATCAAATTGGCTC
AACTTAGAGGCTCAACCCTCCCGTAA
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