Gvermi12937.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12937.t1
Unique NameGvermi12937.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length605
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2234448..2236262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog983917.RGE_19020
Preferred namepepV
PFAMsM20_dimer,Peptidase_M20
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00064,RC00090
KEGG koko:K01439
KEGG ReactionR02734
KEGG Pathwayko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230
KEGG ModuleM00016
Evalue2.04e-127
EggNOG OGsCOG0624@1|root,COG0624@2|Bacteria,1R44A@1224|Proteobacteria,2VMBU@28216|Betaproteobacteria
EC3.5.1.18
DescriptionDipeptidase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12937Gvermi12937Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2234448..2236262 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12937.t1.stop1Gvermi12937.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2234448..2234450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12937.t1.CDS1Gvermi12937.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2234448..2236262 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12937.t1.exon1Gvermi12937.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2234448..2236262 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12937.t1.start1Gvermi12937.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2236260..2236262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12937.t1Gvermi12937.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2234448..2236262 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12937.t1 ID=Gvermi12937.t1|Name=Gvermi12937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=605bp
MDNPTLKKLWQNWVKETTDLCKIRTYRNAELSEEQVRAGLKQCRNYIDTI
ATDFNRNILKKHQLASFEWCGDGTNGTHDPNEEEIANNPYWVFGYRIGPD
SAKEKISIICHLDTVPASDGDGWTPFSPTSEEREYPEGTISPQQFLVGRG
CIDDKGPAMSAFIMFRALAENYDSSDPDFFDITQVEIIFDTSEESDMSTP
RYMLAPGTRRPGFGIVYDAMWAVRAEKGGERPVFVVDMMQESAEVPLYAS
TMFTSPNNSNNTIPDWAKVEVTGRSEALTTFKETVQDTFKNFNFDDPNYY
GGKLSVDSENDPSGAISKVILTINVEGAQHGSAPDENRSEGVNPLVSLSN
FVAGLNDAGNLGVNAVTSMAKFIQWTWGTYAFGEKHESLYKHDSVFLEGN
GTTYAVTKCTMQDDGSVKLEIDIRYALDHHGEEWDGYTEGELEGHSRFHA
IFTALTTEFGIAHAALGRISHTTSTIFGPDIRIPDTNENYQKVEEAYRKV
MGVDPARLAIGGGTDAKGNTSLLAMGPLFSPNMGMPISYHGISEAAPMTD
MEISTQIIYNIFELELKNPSIARLSEVLKRRKDEKMIAGLKKVISRRHSH
CCSR*
back to top

spliced messenger RNA

>Gvermi12937.t1 ID=Gvermi12937.t1|Name=Gvermi12937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1815bp|location=Sequence derived from alignment at ScGOVlb_425:2234448..2236262- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACCCTACTTTGAAGAAACTGTGGCAAAATTGGGTGAAGGAGAC
CACGGATCTTTGCAAGATCAGAACATACAGAAATGCTGAACTATCAGAAG
AACAAGTACGCGCCGGGTTGAAACAGTGCCGAAACTATATAGACACAATT
GCAACCGACTTCAACAGAAACATATTGAAGAAACACCAGCTCGCTTCTTT
CGAGTGGTGTGGGGATGGGACAAACGGTACCCATGACCCGAACGAGGAAG
AAATCGCTAATAATCCTTACTGGGTGTTTGGATATCGCATTGGTCCTGAT
TCTGCCAAGGAGAAGATAAGCATCATTTGCCATCTTGATACCGTTCCGGC
TTCAGACGGTGATGGATGGACTCCATTTTCACCCACTTCAGAAGAGAGAG
AATATCCGGAGGGTACTATATCACCCCAACAGTTTCTAGTAGGCAGAGGT
TGCATAGATGATAAGGGCCCTGCTATGTCTGCCTTCATCATGTTCCGCGC
GCTTGCTGAAAATTATGACTCCTCGGACCCTGATTTCTTTGACATTACAC
AAGTAGAGATCATCTTTGATACTTCAGAGGAATCGGACATGTCAACTCCT
CGGTATATGTTGGCTCCTGGTACAAGGAGGCCGGGCTTTGGCATTGTCTA
CGATGCTATGTGGGCTGTTCGAGCAGAAAAGGGTGGTGAACGTCCTGTGT
TTGTCGTAGATATGATGCAGGAGTCTGCTGAGGTGCCCTTGTACGCTTCC
ACCATGTTTACATCTCCCAATAACTCCAATAATACCATTCCGGATTGGGC
TAAGGTTGAGGTGACTGGTCGGTCCGAAGCACTCACTACATTCAAAGAGA
CCGTACAAGACACGTTCAAGAACTTCAATTTTGACGATCCAAATTACTAT
GGTGGTAAGCTATCTGTGGACTCTGAAAATGATCCTAGCGGAGCCATCTC
GAAGGTGATTTTAACAATCAACGTGGAAGGTGCCCAACATGGATCTGCTC
CCGATGAAAATCGCAGTGAGGGAGTGAATCCATTAGTGTCGCTGTCGAAC
TTTGTCGCTGGACTGAATGATGCTGGAAATTTGGGTGTCAACGCTGTGAC
ATCGATGGCAAAATTTATTCAATGGACGTGGGGTACATATGCTTTTGGTG
AGAAACACGAATCACTCTACAAGCATGACAGCGTTTTTCTCGAAGGCAAT
GGCACGACCTATGCCGTGACAAAGTGTACTATGCAAGACGACGGATCTGT
GAAGCTGGAGATTGACATCAGGTACGCCTTGGACCATCATGGTGAGGAAT
GGGATGGATATACAGAAGGAGAATTAGAGGGGCATAGTCGGTTTCATGCC
ATATTTACCGCTCTCACGACAGAATTTGGTATTGCGCATGCGGCACTGGG
ACGCATTTCTCATACAACAAGTACAATATTTGGACCTGACATCCGCATTC
CGGATACGAACGAGAACTATCAAAAGGTAGAAGAAGCATACAGGAAGGTC
ATGGGGGTAGATCCTGCTCGCTTGGCGATCGGCGGGGGCACTGATGCGAA
AGGAAATACGTCGTTGTTAGCCATGGGCCCACTGTTCTCCCCAAATATGG
GAATGCCAATAAGCTATCATGGTATTTCTGAGGCAGCGCCAATGACCGAT
ATGGAGATCAGCACTCAAATCATCTATAATATCTTTGAATTGGAACTAAA
GAATCCTAGCATTGCTCGGCTTTCAGAAGTGCTCAAGAGGCGAAAAGATG
AAAAGATGATTGCAGGATTGAAGAAGGTTATTAGTCGACGTCACAGTCAC
TGTTGCTCACGTTAG
back to top

protein sequence of Gvermi12937.t1

>Gvermi12937.t1 ID=Gvermi12937.t1|Name=Gvermi12937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=605bp
MDNPTLKKLWQNWVKETTDLCKIRTYRNAELSEEQVRAGLKQCRNYIDTI
ATDFNRNILKKHQLASFEWCGDGTNGTHDPNEEEIANNPYWVFGYRIGPD
SAKEKISIICHLDTVPASDGDGWTPFSPTSEEREYPEGTISPQQFLVGRG
CIDDKGPAMSAFIMFRALAENYDSSDPDFFDITQVEIIFDTSEESDMSTP
RYMLAPGTRRPGFGIVYDAMWAVRAEKGGERPVFVVDMMQESAEVPLYAS
TMFTSPNNSNNTIPDWAKVEVTGRSEALTTFKETVQDTFKNFNFDDPNYY
GGKLSVDSENDPSGAISKVILTINVEGAQHGSAPDENRSEGVNPLVSLSN
FVAGLNDAGNLGVNAVTSMAKFIQWTWGTYAFGEKHESLYKHDSVFLEGN
GTTYAVTKCTMQDDGSVKLEIDIRYALDHHGEEWDGYTEGELEGHSRFHA
IFTALTTEFGIAHAALGRISHTTSTIFGPDIRIPDTNENYQKVEEAYRKV
MGVDPARLAIGGGTDAKGNTSLLAMGPLFSPNMGMPISYHGISEAAPMTD
MEISTQIIYNIFELELKNPSIARLSEVLKRRKDEKMIAGLKKVISRRHSH
CCSR*
back to top

mRNA from alignment at ScGOVlb_425:2234448..2236262-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12937.t1 ID=Gvermi12937.t1|Name=Gvermi12937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1815bp|location=Sequence derived from alignment at ScGOVlb_425:2234448..2236262- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAACCCTACTTTGAAGAAACTGTGGCAAAATTGGGTGAAGGAGAC
CACGGATCTTTGCAAGATCAGAACATACAGAAATGCTGAACTATCAGAAG
AACAAGTACGCGCCGGGTTGAAACAGTGCCGAAACTATATAGACACAATT
GCAACCGACTTCAACAGAAACATATTGAAGAAACACCAGCTCGCTTCTTT
CGAGTGGTGTGGGGATGGGACAAACGGTACCCATGACCCGAACGAGGAAG
AAATCGCTAATAATCCTTACTGGGTGTTTGGATATCGCATTGGTCCTGAT
TCTGCCAAGGAGAAGATAAGCATCATTTGCCATCTTGATACCGTTCCGGC
TTCAGACGGTGATGGATGGACTCCATTTTCACCCACTTCAGAAGAGAGAG
AATATCCGGAGGGTACTATATCACCCCAACAGTTTCTAGTAGGCAGAGGT
TGCATAGATGATAAGGGCCCTGCTATGTCTGCCTTCATCATGTTCCGCGC
GCTTGCTGAAAATTATGACTCCTCGGACCCTGATTTCTTTGACATTACAC
AAGTAGAGATCATCTTTGATACTTCAGAGGAATCGGACATGTCAACTCCT
CGGTATATGTTGGCTCCTGGTACAAGGAGGCCGGGCTTTGGCATTGTCTA
CGATGCTATGTGGGCTGTTCGAGCAGAAAAGGGTGGTGAACGTCCTGTGT
TTGTCGTAGATATGATGCAGGAGTCTGCTGAGGTGCCCTTGTACGCTTCC
ACCATGTTTACATCTCCCAATAACTCCAATAATACCATTCCGGATTGGGC
TAAGGTTGAGGTGACTGGTCGGTCCGAAGCACTCACTACATTCAAAGAGA
CCGTACAAGACACGTTCAAGAACTTCAATTTTGACGATCCAAATTACTAT
GGTGGTAAGCTATCTGTGGACTCTGAAAATGATCCTAGCGGAGCCATCTC
GAAGGTGATTTTAACAATCAACGTGGAAGGTGCCCAACATGGATCTGCTC
CCGATGAAAATCGCAGTGAGGGAGTGAATCCATTAGTGTCGCTGTCGAAC
TTTGTCGCTGGACTGAATGATGCTGGAAATTTGGGTGTCAACGCTGTGAC
ATCGATGGCAAAATTTATTCAATGGACGTGGGGTACATATGCTTTTGGTG
AGAAACACGAATCACTCTACAAGCATGACAGCGTTTTTCTCGAAGGCAAT
GGCACGACCTATGCCGTGACAAAGTGTACTATGCAAGACGACGGATCTGT
GAAGCTGGAGATTGACATCAGGTACGCCTTGGACCATCATGGTGAGGAAT
GGGATGGATATACAGAAGGAGAATTAGAGGGGCATAGTCGGTTTCATGCC
ATATTTACCGCTCTCACGACAGAATTTGGTATTGCGCATGCGGCACTGGG
ACGCATTTCTCATACAACAAGTACAATATTTGGACCTGACATCCGCATTC
CGGATACGAACGAGAACTATCAAAAGGTAGAAGAAGCATACAGGAAGGTC
ATGGGGGTAGATCCTGCTCGCTTGGCGATCGGCGGGGGCACTGATGCGAA
AGGAAATACGTCGTTGTTAGCCATGGGCCCACTGTTCTCCCCAAATATGG
GAATGCCAATAAGCTATCATGGTATTTCTGAGGCAGCGCCAATGACCGAT
ATGGAGATCAGCACTCAAATCATCTATAATATCTTTGAATTGGAACTAAA
GAATCCTAGCATTGCTCGGCTTTCAGAAGTGCTCAAGAGGCGAAAAGATG
AAAAGATGATTGCAGGATTGAAGAAGGTTATTAGTCGACGTCACAGTCAC
TGTTGCTCACGTTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:2234448..2236262-

>Gvermi12937.t1 ID=Gvermi12937.t1|Name=Gvermi12937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1815bp|location=Sequence derived from alignment at ScGOVlb_425:2234448..2236262- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAACCCTACTTTGAAGAAACTGTGGCAAAATTGGGTGAAGGAGAC
CACGGATCTTTGCAAGATCAGAACATACAGAAATGCTGAACTATCAGAAG
AACAAGTACGCGCCGGGTTGAAACAGTGCCGAAACTATATAGACACAATT
GCAACCGACTTCAACAGAAACATATTGAAGAAACACCAGCTCGCTTCTTT
CGAGTGGTGTGGGGATGGGACAAACGGTACCCATGACCCGAACGAGGAAG
AAATCGCTAATAATCCTTACTGGGTGTTTGGATATCGCATTGGTCCTGAT
TCTGCCAAGGAGAAGATAAGCATCATTTGCCATCTTGATACCGTTCCGGC
TTCAGACGGTGATGGATGGACTCCATTTTCACCCACTTCAGAAGAGAGAG
AATATCCGGAGGGTACTATATCACCCCAACAGTTTCTAGTAGGCAGAGGT
TGCATAGATGATAAGGGCCCTGCTATGTCTGCCTTCATCATGTTCCGCGC
GCTTGCTGAAAATTATGACTCCTCGGACCCTGATTTCTTTGACATTACAC
AAGTAGAGATCATCTTTGATACTTCAGAGGAATCGGACATGTCAACTCCT
CGGTATATGTTGGCTCCTGGTACAAGGAGGCCGGGCTTTGGCATTGTCTA
CGATGCTATGTGGGCTGTTCGAGCAGAAAAGGGTGGTGAACGTCCTGTGT
TTGTCGTAGATATGATGCAGGAGTCTGCTGAGGTGCCCTTGTACGCTTCC
ACCATGTTTACATCTCCCAATAACTCCAATAATACCATTCCGGATTGGGC
TAAGGTTGAGGTGACTGGTCGGTCCGAAGCACTCACTACATTCAAAGAGA
CCGTACAAGACACGTTCAAGAACTTCAATTTTGACGATCCAAATTACTAT
GGTGGTAAGCTATCTGTGGACTCTGAAAATGATCCTAGCGGAGCCATCTC
GAAGGTGATTTTAACAATCAACGTGGAAGGTGCCCAACATGGATCTGCTC
CCGATGAAAATCGCAGTGAGGGAGTGAATCCATTAGTGTCGCTGTCGAAC
TTTGTCGCTGGACTGAATGATGCTGGAAATTTGGGTGTCAACGCTGTGAC
ATCGATGGCAAAATTTATTCAATGGACGTGGGGTACATATGCTTTTGGTG
AGAAACACGAATCACTCTACAAGCATGACAGCGTTTTTCTCGAAGGCAAT
GGCACGACCTATGCCGTGACAAAGTGTACTATGCAAGACGACGGATCTGT
GAAGCTGGAGATTGACATCAGGTACGCCTTGGACCATCATGGTGAGGAAT
GGGATGGATATACAGAAGGAGAATTAGAGGGGCATAGTCGGTTTCATGCC
ATATTTACCGCTCTCACGACAGAATTTGGTATTGCGCATGCGGCACTGGG
ACGCATTTCTCATACAACAAGTACAATATTTGGACCTGACATCCGCATTC
CGGATACGAACGAGAACTATCAAAAGGTAGAAGAAGCATACAGGAAGGTC
ATGGGGGTAGATCCTGCTCGCTTGGCGATCGGCGGGGGCACTGATGCGAA
AGGAAATACGTCGTTGTTAGCCATGGGCCCACTGTTCTCCCCAAATATGG
GAATGCCAATAAGCTATCATGGTATTTCTGAGGCAGCGCCAATGACCGAT
ATGGAGATCAGCACTCAAATCATCTATAATATCTTTGAATTGGAACTAAA
GAATCCTAGCATTGCTCGGCTTTCAGAAGTGCTCAAGAGGCGAAAAGATG
AAAAGATGATTGCAGGATTGAAGAAGGTTATTAGTCGACGTCACAGTCAC
TGTTGCTCACGTTAG
back to top