Gvermi12935.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12935.t1
Unique Name	Gvermi12935.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	449

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:2229872..2231218 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706240.1
Preferred name	USP46
PFAMs	UCH
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11842,ko:K11872
GOs	GO:0000578,GO:0001662,GO:0002209,GO:0002682,GO:0002684,GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0007154,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0007610,GO:0007631,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008343,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009636,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010469,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010992,GO:0010995,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019783,GO:0019941,GO:0022411,GO:0022898,GO:0023051,GO:0023056,GO:0023057,GO:0030163,GO:0030534,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0031982,GO:0032228,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033555,GO:0034762,GO:0034765,GO:0035254,GO:0035255,GO:0035282,GO:0035871,GO:0036211,GO:0036459,GO:0036477,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042592,GO:0042596,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043412,GO:0043624,GO:0043632,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045013,GO:0045471,GO:0045746,GO:0045892,GO:0045934,GO:0045990,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048520,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050795,GO:0050804,GO:0050854,GO:0050856,GO:0050857,GO:0050862,GO:0050896,GO:0051049,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051261,GO:0051603,GO:0051716,GO:0060004,GO:0060013,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071108,GO:0071496,GO:0071704,GO:0071840,GO:0071947,GO:0080090,GO:0090325,GO:0090326,GO:0097305,GO:0097458,GO:0097708,GO:0098657,GO:0099177,GO:0099601,GO:0101005,GO:0140096,GO:1900449,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1904062,GO:2000112,GO:2000113,GO:2000311,GO:2001141,GO:2001257
Evalue	2.45e-156
EggNOG OGs	KOG1864@1\|root,KOG1864@2759\|Eukaryota
EC	3.4.19.12
Description	ubiquitinyl hydrolase activity
COG category	O
BRITE	ko00000,ko01000,ko01002,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12935	Gvermi12935	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 2229872..2231218 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12935.t1.start1	Gvermi12935.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 2229872..2229874 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12935.t1.CDS1	Gvermi12935.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 2229872..2231218 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12935.t1.exon1	Gvermi12935.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 2229872..2231218 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12935.t1.stop1	Gvermi12935.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 2231216..2231218 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12935.t1	Gvermi12935.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 2229872..2231218 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:2229872..2231218+
coding sequence from alignment at ScGOVlb_425:2229872..2231218+

mRNA sequence

>Gvermi12935.t1 ID=Gvermi12935.t1|Name=Gvermi12935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=449bp
MGSAISTGNKLEKALDANLPEDERYFGLENFGNTCYCNSVLQALYFCEPF
RKAVLNYTSNRRIAKAQPIDPRANSSLLSAAPSLLPKATNSSLMGNSVSN
ASRTTEANSAAEYGPSTSANFLDSSENGAEETMLTALGDLFMQIATQKKR
TGSVPPKTFVNKLRQENELFSSYMHQDAHEFLNFILNEVVECLHRENSAK
SQREQNHPSKDPYSNYLTNVNGKLQNGSVIPISEEKVLQGKGNSKTFVHE
LFEGHLSNEVRCLCCETVTQRVESFFDLSVDVEQNSSLTSCLRNFSSTEL
LEKQDKFFCDACCSLQEAERRMRIKQLPKILALHLKRFKYVEPLGKYKKL
NYRVVFPLELRLCNTSDDAEDPDRLYSLFAVVVHVGSGPNQGHYVSLIKS
HRQWLMFDDDAVEPKDEGEIQSVYGVTQENAQSTEAGYILFYEQISAS*

spliced messenger RNA

>Gvermi12935.t1 ID=Gvermi12935.t1|Name=Gvermi12935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at ScGOVlb_425:2229872..2231218+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCAGCCATCTCCACGGGCAATAAACTGGAGAAGGCTTTAGATGC
CAACCTCCCCGAGGATGAACGATACTTTGGCCTGGAGAACTTTGGCAACA
CCTGTTACTGCAACTCCGTTCTTCAGGCACTTTACTTCTGCGAACCGTTT
CGAAAGGCGGTTCTGAACTACACAAGCAATCGCAGGATCGCTAAGGCGCA
ACCGATTGACCCCAGAGCGAACTCCAGTTTGCTTTCCGCCGCCCCCTCGC
TGCTGCCCAAGGCTACAAACTCCTCCCTGATGGGCAACTCTGTTTCAAAC
GCTTCGCGAACGACAGAAGCCAACTCGGCGGCTGAATACGGCCCCTCGAC
GAGTGCCAACTTTCTCGACTCGAGCGAAAATGGCGCTGAAGAAACAATGC
TCACTGCTCTTGGCGACTTGTTCATGCAGATTGCCACGCAGAAAAAACGC
ACCGGTTCTGTACCTCCCAAAACCTTTGTGAACAAACTACGCCAGGAGAA
CGAGCTTTTCTCCAGCTACATGCACCAGGATGCCCATGAATTCCTCAACT
TTATTCTCAATGAAGTTGTCGAGTGTTTGCACAGGGAGAACTCTGCGAAG
AGCCAACGCGAGCAGAATCATCCCTCGAAGGACCCTTACTCAAATTACCT
AACAAACGTCAATGGAAAGCTACAAAACGGCTCTGTCATCCCGATTTCCG
AAGAGAAAGTTTTGCAAGGAAAGGGAAACTCCAAGACTTTTGTACATGAG
TTATTCGAGGGCCATCTTTCCAACGAAGTTAGATGTCTGTGCTGCGAAAC
CGTCACGCAGAGAGTAGAATCATTCTTTGATTTGAGTGTTGATGTGGAAC
AGAACTCGTCGCTCACTTCATGCCTTCGTAATTTCTCCTCGACAGAGTTG
CTTGAAAAGCAGGACAAGTTTTTCTGCGACGCGTGTTGTTCACTTCAGGA
GGCAGAGCGACGTATGAGAATCAAACAATTACCCAAGATTCTTGCACTGC
ATCTGAAACGTTTCAAATACGTCGAGCCGTTGGGCAAATACAAGAAGCTT
AATTATCGAGTCGTATTTCCGCTCGAACTGCGTCTTTGTAACACTAGTGA
TGACGCCGAGGATCCTGATCGTTTGTATTCTTTATTTGCGGTAGTAGTTC
ATGTTGGATCGGGTCCGAACCAAGGTCATTATGTATCTCTCATCAAGTCA
CATAGGCAATGGTTAATGTTCGATGACGATGCAGTAGAACCGAAGGACGA
AGGCGAAATTCAAAGCGTGTACGGTGTGACTCAGGAGAACGCACAGAGCA
CAGAGGCAGGATACATTTTGTTCTACGAACAAATCAGTGCCTCTTAA

protein sequence of Gvermi12935.t1

>Gvermi12935.t1 ID=Gvermi12935.t1|Name=Gvermi12935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=449bp
MGSAISTGNKLEKALDANLPEDERYFGLENFGNTCYCNSVLQALYFCEPF
RKAVLNYTSNRRIAKAQPIDPRANSSLLSAAPSLLPKATNSSLMGNSVSN
ASRTTEANSAAEYGPSTSANFLDSSENGAEETMLTALGDLFMQIATQKKR
TGSVPPKTFVNKLRQENELFSSYMHQDAHEFLNFILNEVVECLHRENSAK
SQREQNHPSKDPYSNYLTNVNGKLQNGSVIPISEEKVLQGKGNSKTFVHE
LFEGHLSNEVRCLCCETVTQRVESFFDLSVDVEQNSSLTSCLRNFSSTEL
LEKQDKFFCDACCSLQEAERRMRIKQLPKILALHLKRFKYVEPLGKYKKL
NYRVVFPLELRLCNTSDDAEDPDRLYSLFAVVVHVGSGPNQGHYVSLIKS
HRQWLMFDDDAVEPKDEGEIQSVYGVTQENAQSTEAGYILFYEQISAS*

mRNA from alignment at ScGOVlb_425:2229872..2231218+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12935.t1 ID=Gvermi12935.t1|Name=Gvermi12935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at ScGOVlb_425:2229872..2231218+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTTCAGCCATCTCCACGGGCAATAAACTGGAGAAGGCTTTAGATGC
CAACCTCCCCGAGGATGAACGATACTTTGGCCTGGAGAACTTTGGCAACA
CCTGTTACTGCAACTCCGTTCTTCAGGCACTTTACTTCTGCGAACCGTTT
CGAAAGGCGGTTCTGAACTACACAAGCAATCGCAGGATCGCTAAGGCGCA
ACCGATTGACCCCAGAGCGAACTCCAGTTTGCTTTCCGCCGCCCCCTCGC
TGCTGCCCAAGGCTACAAACTCCTCCCTGATGGGCAACTCTGTTTCAAAC
GCTTCGCGAACGACAGAAGCCAACTCGGCGGCTGAATACGGCCCCTCGAC
GAGTGCCAACTTTCTCGACTCGAGCGAAAATGGCGCTGAAGAAACAATGC
TCACTGCTCTTGGCGACTTGTTCATGCAGATTGCCACGCAGAAAAAACGC
ACCGGTTCTGTACCTCCCAAAACCTTTGTGAACAAACTACGCCAGGAGAA
CGAGCTTTTCTCCAGCTACATGCACCAGGATGCCCATGAATTCCTCAACT
TTATTCTCAATGAAGTTGTCGAGTGTTTGCACAGGGAGAACTCTGCGAAG
AGCCAACGCGAGCAGAATCATCCCTCGAAGGACCCTTACTCAAATTACCT
AACAAACGTCAATGGAAAGCTACAAAACGGCTCTGTCATCCCGATTTCCG
AAGAGAAAGTTTTGCAAGGAAAGGGAAACTCCAAGACTTTTGTACATGAG
TTATTCGAGGGCCATCTTTCCAACGAAGTTAGATGTCTGTGCTGCGAAAC
CGTCACGCAGAGAGTAGAATCATTCTTTGATTTGAGTGTTGATGTGGAAC
AGAACTCGTCGCTCACTTCATGCCTTCGTAATTTCTCCTCGACAGAGTTG
CTTGAAAAGCAGGACAAGTTTTTCTGCGACGCGTGTTGTTCACTTCAGGA
GGCAGAGCGACGTATGAGAATCAAACAATTACCCAAGATTCTTGCACTGC
ATCTGAAACGTTTCAAATACGTCGAGCCGTTGGGCAAATACAAGAAGCTT
AATTATCGAGTCGTATTTCCGCTCGAACTGCGTCTTTGTAACACTAGTGA
TGACGCCGAGGATCCTGATCGTTTGTATTCTTTATTTGCGGTAGTAGTTC
ATGTTGGATCGGGTCCGAACCAAGGTCATTATGTATCTCTCATCAAGTCA
CATAGGCAATGGTTAATGTTCGATGACGATGCAGTAGAACCGAAGGACGA
AGGCGAAATTCAAAGCGTGTACGGTGTGACTCAGGAGAACGCACAGAGCA
CAGAGGCAGGATACATTTTGTTCTACGAACAAATCAGTGCCTCTTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:2229872..2231218+

>Gvermi12935.t1 ID=Gvermi12935.t1|Name=Gvermi12935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1347bp|location=Sequence derived from alignment at ScGOVlb_425:2229872..2231218+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTTCAGCCATCTCCACGGGCAATAAACTGGAGAAGGCTTTAGATGC
CAACCTCCCCGAGGATGAACGATACTTTGGCCTGGAGAACTTTGGCAACA
CCTGTTACTGCAACTCCGTTCTTCAGGCACTTTACTTCTGCGAACCGTTT
CGAAAGGCGGTTCTGAACTACACAAGCAATCGCAGGATCGCTAAGGCGCA
ACCGATTGACCCCAGAGCGAACTCCAGTTTGCTTTCCGCCGCCCCCTCGC
TGCTGCCCAAGGCTACAAACTCCTCCCTGATGGGCAACTCTGTTTCAAAC
GCTTCGCGAACGACAGAAGCCAACTCGGCGGCTGAATACGGCCCCTCGAC
GAGTGCCAACTTTCTCGACTCGAGCGAAAATGGCGCTGAAGAAACAATGC
TCACTGCTCTTGGCGACTTGTTCATGCAGATTGCCACGCAGAAAAAACGC
ACCGGTTCTGTACCTCCCAAAACCTTTGTGAACAAACTACGCCAGGAGAA
CGAGCTTTTCTCCAGCTACATGCACCAGGATGCCCATGAATTCCTCAACT
TTATTCTCAATGAAGTTGTCGAGTGTTTGCACAGGGAGAACTCTGCGAAG
AGCCAACGCGAGCAGAATCATCCCTCGAAGGACCCTTACTCAAATTACCT
AACAAACGTCAATGGAAAGCTACAAAACGGCTCTGTCATCCCGATTTCCG
AAGAGAAAGTTTTGCAAGGAAAGGGAAACTCCAAGACTTTTGTACATGAG
TTATTCGAGGGCCATCTTTCCAACGAAGTTAGATGTCTGTGCTGCGAAAC
CGTCACGCAGAGAGTAGAATCATTCTTTGATTTGAGTGTTGATGTGGAAC
AGAACTCGTCGCTCACTTCATGCCTTCGTAATTTCTCCTCGACAGAGTTG
CTTGAAAAGCAGGACAAGTTTTTCTGCGACGCGTGTTGTTCACTTCAGGA
GGCAGAGCGACGTATGAGAATCAAACAATTACCCAAGATTCTTGCACTGC
ATCTGAAACGTTTCAAATACGTCGAGCCGTTGGGCAAATACAAGAAGCTT
AATTATCGAGTCGTATTTCCGCTCGAACTGCGTCTTTGTAACACTAGTGA
TGACGCCGAGGATCCTGATCGTTTGTATTCTTTATTTGCGGTAGTAGTTC
ATGTTGGATCGGGTCCGAACCAAGGTCATTATGTATCTCTCATCAAGTCA
CATAGGCAATGGTTAATGTTCGATGACGATGCAGTAGAACCGAAGGACGA
AGGCGAAATTCAAAGCGTGTACGGTGTGACTCAGGAGAACGCACAGAGCA
CAGAGGCAGGATACATTTTGTTCTACGAACAAATCAGTGCCTCTTAA