Gvermi12927.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12927.t1
Unique Name	Gvermi12927.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	243

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:2148162..2148890 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	164328.Phyra74019
PFAMs	DDE_Tnp_1_7
Max annot lvl	4776\|Peronosporales
Evalue	2.35e-43
EggNOG OGs	29994@1\|root,2RGAU@2759\|Eukaryota,3QHY8@4776\|Peronosporales

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12927	Gvermi12927	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 2148162..2148890 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12927.t1.start1	Gvermi12927.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 2148162..2148164 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12927.t1.CDS1	Gvermi12927.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 2148162..2148890 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12927.t1.exon1	Gvermi12927.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 2148162..2148890 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12927.t1.stop1	Gvermi12927.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 2148888..2148890 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12927.t1	Gvermi12927.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 2148162..2148890 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:2148162..2148890+
coding sequence from alignment at ScGOVlb_425:2148162..2148890+

mRNA sequence

>Gvermi12927.t1 ID=Gvermi12927.t1|Name=Gvermi12927.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=243bp
MGRDTFMNIRSALGLYAAYDPELAIVDPPWLSRAILELFARNSAALAVPV
GVSFLAENTVRCESCSAARSYMKSKPVKFGIRFYVVVGWSHAYLHTLQDN
GSGNKRWQSPVQRYTTVFRNLRGAVERKIDGEFVPKSTASALWCAQMAHQ
TKLHATPTNGRLMVMDNFYTRPLLARQLYTLSDGECGVLGTVRFTNMEVL
NRSALKEAVKELKHARRGEWRLVQVFEKASDPQALPLMAQKA*

spliced messenger RNA

>Gvermi12927.t1 ID=Gvermi12927.t1|Name=Gvermi12927.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=729bp|location=Sequence derived from alignment at ScGOVlb_425:2148162..2148890+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgggaagggacacgttcatgaacatacgttctgcattgggactgtacgc
cgcatatgatcctgagctagctatagttgatcctccgtggctcagccgcg
ctattctcgagctttttgcacggaactctgcagccctcgccgttcctgta
ggtgtcagtttcttggctgaaaacacagtgagatgcgaaagttgctcagc
tgcacgatcgtacatgaagagcaagccggtcaagtttggaattaggttct
acgtggtggtgggttggtcacacgcttatctacacactctacaagataat
ggatcgggaaataagagatggcaaagtccagttcagagatacacaacagt
gtttagaaatcttcgtggggccgtggagagaaagattgatggagaattcg
ttcccaaatcgactgcctccgcgttatggtgtgctcaaatggcacaccag
acaaagctacatgctactccgactaacgggcgacttatggtgatggataa
tttctacaccaggcctttgttagcccgccaactatacaccttgagcgatg
gtgaatgtggggttttgggtacagttcgattcaccaatatggaggttttg
aaccgttcggcattaaaagaagcagtaaaagagctcaagcatgcacgaag
gggagagtggcgtttggttcaagtgttcgagaaggcttcagatccacagg
ctttacctctgatggcacaaaaggcatga

protein sequence of Gvermi12927.t1

>Gvermi12927.t1 ID=Gvermi12927.t1|Name=Gvermi12927.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=243bp
MGRDTFMNIRSALGLYAAYDPELAIVDPPWLSRAILELFARNSAALAVPV
GVSFLAENTVRCESCSAARSYMKSKPVKFGIRFYVVVGWSHAYLHTLQDN
GSGNKRWQSPVQRYTTVFRNLRGAVERKIDGEFVPKSTASALWCAQMAHQ
TKLHATPTNGRLMVMDNFYTRPLLARQLYTLSDGECGVLGTVRFTNMEVL
NRSALKEAVKELKHARRGEWRLVQVFEKASDPQALPLMAQKA*

mRNA from alignment at ScGOVlb_425:2148162..2148890+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12927.t1 ID=Gvermi12927.t1|Name=Gvermi12927.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=729bp|location=Sequence derived from alignment at ScGOVlb_425:2148162..2148890+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgggaagggacacgttcatgaacatacgttctgcattgggactgtacgc
cgcatatgatcctgagctagctatagttgatcctccgtggctcagccgcg
ctattctcgagctttttgcacggaactctgcagccctcgccgttcctgta
ggtgtcagtttcttggctgaaaacacagtgagatgcgaaagttgctcagc
tgcacgatcgtacatgaagagcaagccggtcaagtttggaattaggttct
acgtggtggtgggttggtcacacgcttatctacacactctacaagataat
ggatcgggaaataagagatggcaaagtccagttcagagatacacaacagt
gtttagaaatcttcgtggggccgtggagagaaagattgatggagaattcg
ttcccaaatcgactgcctccgcgttatggtgtgctcaaatggcacaccag
acaaagctacatgctactccgactaacgggcgacttatggtgatggataa
tttctacaccaggcctttgttagcccgccaactatacaccttgagcgatg
gtgaatgtggggttttgggtacagttcgattcaccaatatggaggttttg
aaccgttcggcattaaaagaagcagtaaaagagctcaagcatgcacgaag
gggagagtggcgtttggttcaagtgttcgagaaggcttcagatccacagg
ctttacctctgatggcacaaaaggcatga

Coding sequence (CDS) from alignment at ScGOVlb_425:2148162..2148890+

>Gvermi12927.t1 ID=Gvermi12927.t1|Name=Gvermi12927.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=729bp|location=Sequence derived from alignment at ScGOVlb_425:2148162..2148890+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgggaagggacacgttcatgaacatacgttctgcattgggactgtacgc
cgcatatgatcctgagctagctatagttgatcctccgtggctcagccgcg
ctattctcgagctttttgcacggaactctgcagccctcgccgttcctgta
ggtgtcagtttcttggctgaaaacacagtgagatgcgaaagttgctcagc
tgcacgatcgtacatgaagagcaagccggtcaagtttggaattaggttct
acgtggtggtgggttggtcacacgcttatctacacactctacaagataat
ggatcgggaaataagagatggcaaagtccagttcagagatacacaacagt
gtttagaaatcttcgtggggccgtggagagaaagattgatggagaattcg
ttcccaaatcgactgcctccgcgttatggtgtgctcaaatggcacaccag
acaaagctacatgctactccgactaacgggcgacttatggtgatggataa
tttctacaccaggcctttgttagcccgccaactatacaccttgagcgatg
gtgaatgtggggttttgggtacagttcgattcaccaatatggaggttttg
aaccgttcggcattaaaagaagcagtaaaagagctcaagcatgcacgaag
gggagagtggcgtttggttcaagtgttcgagaaggcttcagatccacagg
ctttacctctgatggcacaaaaggcatga