Gvermi12921.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12921.t1
Unique NameGvermi12921.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length635
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2091226..2093130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12921Gvermi12921Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2091226..2093130 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12921.t1.start1Gvermi12921.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2091226..2091228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12921.t1.CDS1Gvermi12921.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2091226..2093130 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12921.t1.exon1Gvermi12921.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2091226..2093130 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12921.t1.stop1Gvermi12921.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2093128..2093130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12921.t1Gvermi12921.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2091226..2093130 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12921.t1 ID=Gvermi12921.t1|Name=Gvermi12921.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=635bp
MAASATDAPSSPAPPPAPPPAPSAATTPNAKREQQMPSPTAKPAALPSPT
KTLWPAPPPSTPVGNWVLHQHSFAPKREYFIAYCAGLARRRITDHLMWFR
FPAVPGRSEQRVAVHYSRLAWVGGPLAELVASPADRKPPPAAAAAAAAAA
PTANNTTSEGGGGGGGGGGGGGGGGGGGESDAGGAREEARSETKADAEPD
AQRDDERMSAADEGAQRDASGAADEDADHPYRRAEAYDLSELDTPRTFAI
VVKFLYCEEIQFNYLTFDELVALATTAHRWSLTDLYHATFAYVTDQDLLA
GGLGIRTFLPLVAHEETPEPFRRYFCIAVGHHFDVLFPRLRAVREATPER
TPALWRTVFKQKMTSHVVHCITLYSRGLYDEYLLDVVLRYFERQVESSDD
EVSGLLSQLSWDDIDVGAVFSAGGASRAWSTRGVRLAALASYAPQTAALE
VRIPWNVPLQRLLKQAAWSFQTEHVACGPYVCYLHVRKGVGREVSLFVHI
WDADNKPLKDDVRHETVRVKCRATEANCACDSWKQWSDCSHGFLENLRFE
GQLRRYPGLGWSQFLEERRLDEWRHAHGPDCGLAITTVLQFVRPTRPFEG
PPRRSRPRAASPPRLQPPIHKKRSRSRMKLRDSR*
back to top

spliced messenger RNA

>Gvermi12921.t1 ID=Gvermi12921.t1|Name=Gvermi12921.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at ScGOVlb_425:2091226..2093130+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCTTCCGCCACCGACGCGCCGTCGTCGCCGGCACCCCCCCCGGC
GCCGCCCCCGGCGCCGTCGGCTGCCACCACGCCCAACGCCAAGCGCGAGC
AGCAGATGCCGTCGCCCACCGCCAAGCCCGCGGCGCTGCCGTCGCCCACC
AAGACGCTGTGGCCCGCGCCGCCGCCGTCCACGCCCGTAGGCAACTGGGT
GCTGCATCAGCACTCGTTCGCGCCCAAGCGCGAGTACTTCATCGCGTACT
GCGCAGGGCTGGCGCGCCGCCGCATCACCGACCACCTCATGTGGTTCCGC
TTCCCCGCCGTGCCCGGCCGCAGCGAGCAGCGCGTCGCCGTGCACTACTC
GCGCCTCGCGTGGGTGGGTGGTCCGCTCGCCGAGCTCGTTGCGTCGCCGG
CCGACAGGAAgccgcctcctgccgccgccgctgctgccgccgccgctgcc
cccaccgccAATAATACCACCAGCGAGggcggcggcggcggcggtggcgg
cggtggcggcggtggcggcggtggcggcggtggcgagagcgatgcgggtg
gcgcgcgcgaagaagcgcgttccgagaccaaggccgacgccgagcccgac
gcgcagcgcGATGACGAACGCATGAGCGCCGCGGACGAGGGCGCGCAGCG
CGACGCGTCGGGCGCAGCCGACGAGGACGCCGACCACCCGTACCGGCGCG
CAGAGGCGTACGACCTGTCGGAGCTCGACACGCCGCGCACGTTTGCCATC
GTGGTCAAGTTCCTGTACTGTGAGGAGATCCAGTTCAACTACCTGACGTT
CGACGAGCTGGTGGCGCTGGCCACGACGGCGCACCGGTGGAGCCTGACCG
ACCTGTACCACGCGACGTTCGCGTACGTGACGGACCAGGACCTGCTGGCG
GGCGGGCTGGGCATCCGCACGTTCCTGCCGCTGGTGGCGCACGAGGAGAC
GCCCGAGCCGTTTCGGCGGTACTTTTGCATTGCCGTGGGGCACCACTTTG
ACGTGCTGTTCCCGCGGCTGCGCGCGGTGCGCGAGGCGACGCCGGAGCGC
ACGCCGGCGCTGTGGCGCACGGTGTTCAAGCAGAAGATGACGAGCCACGT
GGTTCACTGCATCACGCTGTACTCGCGCGGGCTGTACGACGAGTACCTGC
TGGACGTGGTGCTGCGGTACTTTGAGCGGCAGGTGGAGAGCTCGGACGAC
GAGGTGTCGGGGCTGCTGAGCCAGCTGTCGTGGGACGACATCGACGTGGg
ggcggtgttcagcgcggggggggcgagccgggcgtggagcacgcgcggcg
tgcggctggcggcgCTGGCGTCGTACGCGCCGCAGACGGCGGCGCTGGAG
GTGCGCATCCCGTGGAACGTGCCGCTGCAGCGGCTGCTCAAGCAGGCGGC
GTGGAGCTTCCAGACGGAGCACGTGGCGTGCGGCCCGTACGTGTGCTACC
TGCACGTGCGCAAGGGCGTCGGGCGCGAGGTGTCGCTGTTCGTGCACATC
TGGGACGCGGACAACAAGCCGCTCAAGGACGACGTGCGCCACGAGACGGT
GCGCGTCAAGTGCCGCGCCACGGAGGCCAACTGCGCGTGCGACAGCTGGA
AGCAGTGGAGCGACTGCTCGCACGGCTTCCTGGAGAACCTGCGCTTCGAG
GGGCAGCTGCGGCGCTACCCGGGGCTGGGCTGGAGCCAGTTCCTCGAGGA
GCGCCGCCTGGACGAGTGGCGCCACGCGCACGGCCCCGACTGCGGGCTCG
CCATCACCACCGTGCTGCAGTTTGTGCGCCCCACGCGCCCGTTCGAGGGC
ccgccgcgccgcagccgcccgcgcgccgccagcccgccgcgcctgcagcc
gccCATCCACAAGAAGCGCAGCCGCTCGCGCATGAAGCTGCGCGACTCGC
GTTAG
back to top

protein sequence of Gvermi12921.t1

>Gvermi12921.t1 ID=Gvermi12921.t1|Name=Gvermi12921.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=635bp
MAASATDAPSSPAPPPAPPPAPSAATTPNAKREQQMPSPTAKPAALPSPT
KTLWPAPPPSTPVGNWVLHQHSFAPKREYFIAYCAGLARRRITDHLMWFR
FPAVPGRSEQRVAVHYSRLAWVGGPLAELVASPADRKPPPAAAAAAAAAA
PTANNTTSEGGGGGGGGGGGGGGGGGGGESDAGGAREEARSETKADAEPD
AQRDDERMSAADEGAQRDASGAADEDADHPYRRAEAYDLSELDTPRTFAI
VVKFLYCEEIQFNYLTFDELVALATTAHRWSLTDLYHATFAYVTDQDLLA
GGLGIRTFLPLVAHEETPEPFRRYFCIAVGHHFDVLFPRLRAVREATPER
TPALWRTVFKQKMTSHVVHCITLYSRGLYDEYLLDVVLRYFERQVESSDD
EVSGLLSQLSWDDIDVGAVFSAGGASRAWSTRGVRLAALASYAPQTAALE
VRIPWNVPLQRLLKQAAWSFQTEHVACGPYVCYLHVRKGVGREVSLFVHI
WDADNKPLKDDVRHETVRVKCRATEANCACDSWKQWSDCSHGFLENLRFE
GQLRRYPGLGWSQFLEERRLDEWRHAHGPDCGLAITTVLQFVRPTRPFEG
PPRRSRPRAASPPRLQPPIHKKRSRSRMKLRDSR*
back to top

mRNA from alignment at ScGOVlb_425:2091226..2093130+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12921.t1 ID=Gvermi12921.t1|Name=Gvermi12921.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at ScGOVlb_425:2091226..2093130+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCTTCCGCCACCGACGCGCCGTCGTCGCCGGCACCCCCCCCGGC
GCCGCCCCCGGCGCCGTCGGCTGCCACCACGCCCAACGCCAAGCGCGAGC
AGCAGATGCCGTCGCCCACCGCCAAGCCCGCGGCGCTGCCGTCGCCCACC
AAGACGCTGTGGCCCGCGCCGCCGCCGTCCACGCCCGTAGGCAACTGGGT
GCTGCATCAGCACTCGTTCGCGCCCAAGCGCGAGTACTTCATCGCGTACT
GCGCAGGGCTGGCGCGCCGCCGCATCACCGACCACCTCATGTGGTTCCGC
TTCCCCGCCGTGCCCGGCCGCAGCGAGCAGCGCGTCGCCGTGCACTACTC
GCGCCTCGCGTGGGTGGGTGGTCCGCTCGCCGAGCTCGTTGCGTCGCCGG
CCGACAGGAAgccgcctcctgccgccgccgctgctgccgccgccgctgcc
cccaccgccAATAATACCACCAGCGAGggcggcggcggcggcggtggcgg
cggtggcggcggtggcggcggtggcggcggtggcgagagcgatgcgggtg
gcgcgcgcgaagaagcgcgttccgagaccaaggccgacgccgagcccgac
gcgcagcgcGATGACGAACGCATGAGCGCCGCGGACGAGGGCGCGCAGCG
CGACGCGTCGGGCGCAGCCGACGAGGACGCCGACCACCCGTACCGGCGCG
CAGAGGCGTACGACCTGTCGGAGCTCGACACGCCGCGCACGTTTGCCATC
GTGGTCAAGTTCCTGTACTGTGAGGAGATCCAGTTCAACTACCTGACGTT
CGACGAGCTGGTGGCGCTGGCCACGACGGCGCACCGGTGGAGCCTGACCG
ACCTGTACCACGCGACGTTCGCGTACGTGACGGACCAGGACCTGCTGGCG
GGCGGGCTGGGCATCCGCACGTTCCTGCCGCTGGTGGCGCACGAGGAGAC
GCCCGAGCCGTTTCGGCGGTACTTTTGCATTGCCGTGGGGCACCACTTTG
ACGTGCTGTTCCCGCGGCTGCGCGCGGTGCGCGAGGCGACGCCGGAGCGC
ACGCCGGCGCTGTGGCGCACGGTGTTCAAGCAGAAGATGACGAGCCACGT
GGTTCACTGCATCACGCTGTACTCGCGCGGGCTGTACGACGAGTACCTGC
TGGACGTGGTGCTGCGGTACTTTGAGCGGCAGGTGGAGAGCTCGGACGAC
GAGGTGTCGGGGCTGCTGAGCCAGCTGTCGTGGGACGACATCGACGTGGg
ggcggtgttcagcgcggggggggcgagccgggcgtggagcacgcgcggcg
tgcggctggcggcgCTGGCGTCGTACGCGCCGCAGACGGCGGCGCTGGAG
GTGCGCATCCCGTGGAACGTGCCGCTGCAGCGGCTGCTCAAGCAGGCGGC
GTGGAGCTTCCAGACGGAGCACGTGGCGTGCGGCCCGTACGTGTGCTACC
TGCACGTGCGCAAGGGCGTCGGGCGCGAGGTGTCGCTGTTCGTGCACATC
TGGGACGCGGACAACAAGCCGCTCAAGGACGACGTGCGCCACGAGACGGT
GCGCGTCAAGTGCCGCGCCACGGAGGCCAACTGCGCGTGCGACAGCTGGA
AGCAGTGGAGCGACTGCTCGCACGGCTTCCTGGAGAACCTGCGCTTCGAG
GGGCAGCTGCGGCGCTACCCGGGGCTGGGCTGGAGCCAGTTCCTCGAGGA
GCGCCGCCTGGACGAGTGGCGCCACGCGCACGGCCCCGACTGCGGGCTCG
CCATCACCACCGTGCTGCAGTTTGTGCGCCCCACGCGCCCGTTCGAGGGC
ccgccgcgccgcagccgcccgcgcgccgccagcccgccgcgcctgcagcc
gccCATCCACAAGAAGCGCAGCCGCTCGCGCATGAAGCTGCGCGACTCGC
GTTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:2091226..2093130+

>Gvermi12921.t1 ID=Gvermi12921.t1|Name=Gvermi12921.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1905bp|location=Sequence derived from alignment at ScGOVlb_425:2091226..2093130+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCTTCCGCCACCGACGCGCCGTCGTCGCCGGCACCCCCCCCGGC
GCCGCCCCCGGCGCCGTCGGCTGCCACCACGCCCAACGCCAAGCGCGAGC
AGCAGATGCCGTCGCCCACCGCCAAGCCCGCGGCGCTGCCGTCGCCCACC
AAGACGCTGTGGCCCGCGCCGCCGCCGTCCACGCCCGTAGGCAACTGGGT
GCTGCATCAGCACTCGTTCGCGCCCAAGCGCGAGTACTTCATCGCGTACT
GCGCAGGGCTGGCGCGCCGCCGCATCACCGACCACCTCATGTGGTTCCGC
TTCCCCGCCGTGCCCGGCCGCAGCGAGCAGCGCGTCGCCGTGCACTACTC
GCGCCTCGCGTGGGTGGGTGGTCCGCTCGCCGAGCTCGTTGCGTCGCCGG
CCGACAGGAAgccgcctcctgccgccgccgctgctgccgccgccgctgcc
cccaccgccAATAATACCACCAGCGAGggcggcggcggcggcggtggcgg
cggtggcggcggtggcggcggtggcggcggtggcgagagcgatgcgggtg
gcgcgcgcgaagaagcgcgttccgagaccaaggccgacgccgagcccgac
gcgcagcgcGATGACGAACGCATGAGCGCCGCGGACGAGGGCGCGCAGCG
CGACGCGTCGGGCGCAGCCGACGAGGACGCCGACCACCCGTACCGGCGCG
CAGAGGCGTACGACCTGTCGGAGCTCGACACGCCGCGCACGTTTGCCATC
GTGGTCAAGTTCCTGTACTGTGAGGAGATCCAGTTCAACTACCTGACGTT
CGACGAGCTGGTGGCGCTGGCCACGACGGCGCACCGGTGGAGCCTGACCG
ACCTGTACCACGCGACGTTCGCGTACGTGACGGACCAGGACCTGCTGGCG
GGCGGGCTGGGCATCCGCACGTTCCTGCCGCTGGTGGCGCACGAGGAGAC
GCCCGAGCCGTTTCGGCGGTACTTTTGCATTGCCGTGGGGCACCACTTTG
ACGTGCTGTTCCCGCGGCTGCGCGCGGTGCGCGAGGCGACGCCGGAGCGC
ACGCCGGCGCTGTGGCGCACGGTGTTCAAGCAGAAGATGACGAGCCACGT
GGTTCACTGCATCACGCTGTACTCGCGCGGGCTGTACGACGAGTACCTGC
TGGACGTGGTGCTGCGGTACTTTGAGCGGCAGGTGGAGAGCTCGGACGAC
GAGGTGTCGGGGCTGCTGAGCCAGCTGTCGTGGGACGACATCGACGTGGg
ggcggtgttcagcgcggggggggcgagccgggcgtggagcacgcgcggcg
tgcggctggcggcgCTGGCGTCGTACGCGCCGCAGACGGCGGCGCTGGAG
GTGCGCATCCCGTGGAACGTGCCGCTGCAGCGGCTGCTCAAGCAGGCGGC
GTGGAGCTTCCAGACGGAGCACGTGGCGTGCGGCCCGTACGTGTGCTACC
TGCACGTGCGCAAGGGCGTCGGGCGCGAGGTGTCGCTGTTCGTGCACATC
TGGGACGCGGACAACAAGCCGCTCAAGGACGACGTGCGCCACGAGACGGT
GCGCGTCAAGTGCCGCGCCACGGAGGCCAACTGCGCGTGCGACAGCTGGA
AGCAGTGGAGCGACTGCTCGCACGGCTTCCTGGAGAACCTGCGCTTCGAG
GGGCAGCTGCGGCGCTACCCGGGGCTGGGCTGGAGCCAGTTCCTCGAGGA
GCGCCGCCTGGACGAGTGGCGCCACGCGCACGGCCCCGACTGCGGGCTCG
CCATCACCACCGTGCTGCAGTTTGTGCGCCCCACGCGCCCGTTCGAGGGC
ccgccgcgccgcagccgcccgcgcgccgccagcccgccgcgcctgcagcc
gccCATCCACAAGAAGCGCAGCCGCTCGCGCATGAAGCTGCGCGACTCGC
GTTAG
back to top