Gvermi12920.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12920.t1
Unique Name	Gvermi12920.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	596

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:2088500..2090287 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMG078CT
Preferred name	NDC80
PFAMs	Ndc80_HEC
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11547
GOs	GO:0000003,GO:0000070,GO:0000132,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000940,GO:0000942,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0007088,GO:0007127,GO:0007163,GO:0007346,GO:0008104,GO:0008150,GO:0008608,GO:0009987,GO:0010564,GO:0010965,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030010,GO:0030071,GO:0031109,GO:0031262,GO:0031617,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0034622,GO:0040001,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045787,GO:0045931,GO:0046785,GO:0048285,GO:0048518,GO:0048522,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051258,GO:0051276,GO:0051293,GO:0051294,GO:0051303,GO:0051310,GO:0051315,GO:0051316,GO:0051321,GO:0051383,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051726,GO:0051783,GO:0051983,GO:0060341,GO:0061982,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071459,GO:0071840,GO:0090068,GO:0090231,GO:0090232,GO:0090266,GO:0090267,GO:0090268,GO:0097435,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901976,GO:1901978,GO:1901987,GO:1901990,GO:1902099,GO:1902850,GO:1903046,GO:1903047,GO:1903504,GO:1903827,GO:1903829,GO:1905340,GO:1905342,GO:1905818
Evalue	5.19e-58
EggNOG OGs	COG5185@1\|root,KOG0995@2759\|Eukaryota
Description	attachment of mitotic spindle microtubules to kinetochore
COG category	D
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12920	Gvermi12920	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 2088500..2090287 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12920.t1.start1	Gvermi12920.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 2088500..2088502 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12920.t1.CDS1	Gvermi12920.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 2088500..2090287 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12920.t1.exon1	Gvermi12920.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 2088500..2090287 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12920.t1.stop1	Gvermi12920.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 2090285..2090287 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12920.t1	Gvermi12920.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 2088500..2090287 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:2088500..2090287+
coding sequence from alignment at ScGOVlb_425:2088500..2090287+

mRNA sequence

>Gvermi12920.t1 ID=Gvermi12920.t1|Name=Gvermi12920.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=596bp
MERSTLGALSRSTLNSRSSAGLPSRTRASLAASKASDDRRASAFPSFGRP
RSTGGAKARQSSLSRSSLALSRTVKRSDPRPLNDRAYMQKCAKHLISFVI
ERGYEHPISPKMLTSPSAKDFQALFLFLVRRVDPTYNFVRRFEDEVPPLL
RCLGYPFTISKSALSAVGSPHTWPTLLGVLTWLVNLLAYCEAYERAQTTD
PAMDPHARRERLFCDNTEAAYDQFLQGADTFPELDAELQAHFSGEDAARA
REIDKLASDREQLAATLHALKTQPSPLRLMREHRDSLATNINKFKLLIPS
LVEHAGAVRKLLRDKQAQLDALHAELQQLRADSARLGDVLQRQERDDIDV
LQIAAQRDGLKKALAKACSDRAAAEAERADAQQLVALGRAELGEVVKAYN
KAVERLQPGDAELKVAVCGDVGGGVLDKDVKAAVLPRLVAQKEELAGMAP
KLHEEIHVLRERGDEVEERLIMLRHSLGMLQAKKSKLEAEYQAKKSHNNE
LLRQRQEMVVVGGEKIAAERERLHELMRCRLKEHKELEEQMSEYEELCGR
YAERWTANTEKCNAAFEEQQRAGRHILAKVGEYFEGRQNALVEEG*

spliced messenger RNA

>Gvermi12920.t1 ID=Gvermi12920.t1|Name=Gvermi12920.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at ScGOVlb_425:2088500..2090287+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCTCCACGCTCGGGGCGCTGTCGCGCAGCACGCTCAACAGCAG
GTCTTccgccgggctgccgtcgcgcacccgcgccagcctcgccgcctcca
aggcctccgacgaccgccgcgcctccgcGTTCCCGTCCTTTGGCCGCCCG
CGCTCCACCGGCGGCGCCAAGGCGCGCCAGAGCTCCCTGTCGCGCTCCTC
GCTCGCCCTGTCGCGCACCGTCAAGCGCTCCGACCCGCGCCCCCTCAACG
ACCGCGCCTACATGCAAAAATGCGCAAAGCACCTCATCTCCTTCGTCATC
GAGCGCGGCTACGAGCACCCCATCTCCCCCAAGATGCTCACCTCCCCCTC
CGCAAAGGACTTCCAGGCGCTCTTTCTCTTCCTCGTCCGCCGCGTCGACC
CGACCTACAACTTTGTCAGGCGCTTCGAGGACGAGGTGCCGCCGCTGCTG
CGCTGCCTGGGCTACCCGTTCACCATCTCCAAGAGCGCCCTCAGCGCCGT
GGGCTCGCCGCACACCTGGCCCACCCTGCTGGGCGTCCTCACCTGGCTCG
TCAACCTGCTCGCGTACTGCGAGGCGTACGAGCGCGCGCAGACCACCGAC
CCCGCCATGGACCCGCACGCGCGCCGCGAGCGCCTGTTCTGCGACAACAC
CGAGGCGGCGTACGACCAGTTCCTGCAGGGCGCCGACACCTTCCCCGAGC
TGGACGCCGAGCTGCAGGCGCACTTCTCCGGCGAGGACGCCGCGCGCGCG
CGCGAGATCGACAAGCTGGCGTCGGACCGCGAGCAGCTGGCCGCCACGCT
GCACGCGCTCAAGACGCAGCCGTCGCCGCTGCGCCTCATGCGCGAGCACC
GCGACTCGCTGGCCACCAACATCAACAAGTTCAAGCTGCTCATCCCGTCG
CTGGTGGAGCACGCCGGCGCCGTGCGCAAGCTGCTGCGCGACAAGCAGGC
GCAGCTGGACGCGCTGCACGCCGAGCTGCAGCAGCTGCGCGCGGACAGCG
CGCGGCTCGGCGACGTGCTGCAGCGGCAGGAGCGCGACGACATCGACGTG
CTGCAGATCGCGGCGCAGCGCGACGGGCTCAAGAAGGCGCTGGCCAAGGC
GTGCTCCGACCGGGCGGCGGCCGAGGCGGAGCGCGCCGACGCGCAGCAGC
TGGTGGCGCTGGGGCGCGCCGAGCTGGGCGAGGTGGTCAAGGCGTACAAC
AAGGCGGTGGAGCGGCTGCAGCCGGGCGACGCGGAGCTCAAGGTGGCGGT
GTGCGGCGATGTGGGCGGCGGCGTGCTGGACAAGGACGTGAAGGCGGCGG
TGCTGCCGCGGCTGGTGGCGCAAAAGGAGGAGTTGGCGGGCATGGCGCCC
AAGCTGCACGAGGAGATCCACGTGCTGCGCGAGCGCGGGGACGAGGTTGA
GGAGCGGCTGATCATGCTGCGGCACTCGCTGGGCATGCTGCAGGCCAAGA
AGAGCAAGCTGGAGGCGGAGTACCAGGCGAAGAAGAGCCACAACAACGAG
CTGCTGAGGCAGAGGCAGGAAATGGTGGTGGTGGGCGGCGAGAAGATCGC
GGCGGAACGCGAGCGTCTGCACGAATTGATGAGGTGCAGGCTGAAGGAGC
ACAAGGAGCTAGAGGAGCAGATGAGCGAGTACGAGGAGCTGTGTGGCAGG
TACGCGGAACGGTGGACGGCGAACACGGAGAAGTGTAACGCGGCGTTTGA
GGAGCAGCAGCGGGCCGGGCGACACATTTTGGCCAAAGTCGGGGAATACT
TTGAAGGGCGGCAGAACGCGCTGGTGGAGGAGGGCTGA

protein sequence of Gvermi12920.t1

>Gvermi12920.t1 ID=Gvermi12920.t1|Name=Gvermi12920.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=596bp
MERSTLGALSRSTLNSRSSAGLPSRTRASLAASKASDDRRASAFPSFGRP
RSTGGAKARQSSLSRSSLALSRTVKRSDPRPLNDRAYMQKCAKHLISFVI
ERGYEHPISPKMLTSPSAKDFQALFLFLVRRVDPTYNFVRRFEDEVPPLL
RCLGYPFTISKSALSAVGSPHTWPTLLGVLTWLVNLLAYCEAYERAQTTD
PAMDPHARRERLFCDNTEAAYDQFLQGADTFPELDAELQAHFSGEDAARA
REIDKLASDREQLAATLHALKTQPSPLRLMREHRDSLATNINKFKLLIPS
LVEHAGAVRKLLRDKQAQLDALHAELQQLRADSARLGDVLQRQERDDIDV
LQIAAQRDGLKKALAKACSDRAAAEAERADAQQLVALGRAELGEVVKAYN
KAVERLQPGDAELKVAVCGDVGGGVLDKDVKAAVLPRLVAQKEELAGMAP
KLHEEIHVLRERGDEVEERLIMLRHSLGMLQAKKSKLEAEYQAKKSHNNE
LLRQRQEMVVVGGEKIAAERERLHELMRCRLKEHKELEEQMSEYEELCGR
YAERWTANTEKCNAAFEEQQRAGRHILAKVGEYFEGRQNALVEEG*

mRNA from alignment at ScGOVlb_425:2088500..2090287+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12920.t1 ID=Gvermi12920.t1|Name=Gvermi12920.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at ScGOVlb_425:2088500..2090287+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCGCTCCACGCTCGGGGCGCTGTCGCGCAGCACGCTCAACAGCAG
GTCTTccgccgggctgccgtcgcgcacccgcgccagcctcgccgcctcca
aggcctccgacgaccgccgcgcctccgcGTTCCCGTCCTTTGGCCGCCCG
CGCTCCACCGGCGGCGCCAAGGCGCGCCAGAGCTCCCTGTCGCGCTCCTC
GCTCGCCCTGTCGCGCACCGTCAAGCGCTCCGACCCGCGCCCCCTCAACG
ACCGCGCCTACATGCAAAAATGCGCAAAGCACCTCATCTCCTTCGTCATC
GAGCGCGGCTACGAGCACCCCATCTCCCCCAAGATGCTCACCTCCCCCTC
CGCAAAGGACTTCCAGGCGCTCTTTCTCTTCCTCGTCCGCCGCGTCGACC
CGACCTACAACTTTGTCAGGCGCTTCGAGGACGAGGTGCCGCCGCTGCTG
CGCTGCCTGGGCTACCCGTTCACCATCTCCAAGAGCGCCCTCAGCGCCGT
GGGCTCGCCGCACACCTGGCCCACCCTGCTGGGCGTCCTCACCTGGCTCG
TCAACCTGCTCGCGTACTGCGAGGCGTACGAGCGCGCGCAGACCACCGAC
CCCGCCATGGACCCGCACGCGCGCCGCGAGCGCCTGTTCTGCGACAACAC
CGAGGCGGCGTACGACCAGTTCCTGCAGGGCGCCGACACCTTCCCCGAGC
TGGACGCCGAGCTGCAGGCGCACTTCTCCGGCGAGGACGCCGCGCGCGCG
CGCGAGATCGACAAGCTGGCGTCGGACCGCGAGCAGCTGGCCGCCACGCT
GCACGCGCTCAAGACGCAGCCGTCGCCGCTGCGCCTCATGCGCGAGCACC
GCGACTCGCTGGCCACCAACATCAACAAGTTCAAGCTGCTCATCCCGTCG
CTGGTGGAGCACGCCGGCGCCGTGCGCAAGCTGCTGCGCGACAAGCAGGC
GCAGCTGGACGCGCTGCACGCCGAGCTGCAGCAGCTGCGCGCGGACAGCG
CGCGGCTCGGCGACGTGCTGCAGCGGCAGGAGCGCGACGACATCGACGTG
CTGCAGATCGCGGCGCAGCGCGACGGGCTCAAGAAGGCGCTGGCCAAGGC
GTGCTCCGACCGGGCGGCGGCCGAGGCGGAGCGCGCCGACGCGCAGCAGC
TGGTGGCGCTGGGGCGCGCCGAGCTGGGCGAGGTGGTCAAGGCGTACAAC
AAGGCGGTGGAGCGGCTGCAGCCGGGCGACGCGGAGCTCAAGGTGGCGGT
GTGCGGCGATGTGGGCGGCGGCGTGCTGGACAAGGACGTGAAGGCGGCGG
TGCTGCCGCGGCTGGTGGCGCAAAAGGAGGAGTTGGCGGGCATGGCGCCC
AAGCTGCACGAGGAGATCCACGTGCTGCGCGAGCGCGGGGACGAGGTTGA
GGAGCGGCTGATCATGCTGCGGCACTCGCTGGGCATGCTGCAGGCCAAGA
AGAGCAAGCTGGAGGCGGAGTACCAGGCGAAGAAGAGCCACAACAACGAG
CTGCTGAGGCAGAGGCAGGAAATGGTGGTGGTGGGCGGCGAGAAGATCGC
GGCGGAACGCGAGCGTCTGCACGAATTGATGAGGTGCAGGCTGAAGGAGC
ACAAGGAGCTAGAGGAGCAGATGAGCGAGTACGAGGAGCTGTGTGGCAGG
TACGCGGAACGGTGGACGGCGAACACGGAGAAGTGTAACGCGGCGTTTGA
GGAGCAGCAGCGGGCCGGGCGACACATTTTGGCCAAAGTCGGGGAATACT
TTGAAGGGCGGCAGAACGCGCTGGTGGAGGAGGGCTGA

Coding sequence (CDS) from alignment at ScGOVlb_425:2088500..2090287+

>Gvermi12920.t1 ID=Gvermi12920.t1|Name=Gvermi12920.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1788bp|location=Sequence derived from alignment at ScGOVlb_425:2088500..2090287+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCGCTCCACGCTCGGGGCGCTGTCGCGCAGCACGCTCAACAGCAG
GTCTTccgccgggctgccgtcgcgcacccgcgccagcctcgccgcctcca
aggcctccgacgaccgccgcgcctccgcGTTCCCGTCCTTTGGCCGCCCG
CGCTCCACCGGCGGCGCCAAGGCGCGCCAGAGCTCCCTGTCGCGCTCCTC
GCTCGCCCTGTCGCGCACCGTCAAGCGCTCCGACCCGCGCCCCCTCAACG
ACCGCGCCTACATGCAAAAATGCGCAAAGCACCTCATCTCCTTCGTCATC
GAGCGCGGCTACGAGCACCCCATCTCCCCCAAGATGCTCACCTCCCCCTC
CGCAAAGGACTTCCAGGCGCTCTTTCTCTTCCTCGTCCGCCGCGTCGACC
CGACCTACAACTTTGTCAGGCGCTTCGAGGACGAGGTGCCGCCGCTGCTG
CGCTGCCTGGGCTACCCGTTCACCATCTCCAAGAGCGCCCTCAGCGCCGT
GGGCTCGCCGCACACCTGGCCCACCCTGCTGGGCGTCCTCACCTGGCTCG
TCAACCTGCTCGCGTACTGCGAGGCGTACGAGCGCGCGCAGACCACCGAC
CCCGCCATGGACCCGCACGCGCGCCGCGAGCGCCTGTTCTGCGACAACAC
CGAGGCGGCGTACGACCAGTTCCTGCAGGGCGCCGACACCTTCCCCGAGC
TGGACGCCGAGCTGCAGGCGCACTTCTCCGGCGAGGACGCCGCGCGCGCG
CGCGAGATCGACAAGCTGGCGTCGGACCGCGAGCAGCTGGCCGCCACGCT
GCACGCGCTCAAGACGCAGCCGTCGCCGCTGCGCCTCATGCGCGAGCACC
GCGACTCGCTGGCCACCAACATCAACAAGTTCAAGCTGCTCATCCCGTCG
CTGGTGGAGCACGCCGGCGCCGTGCGCAAGCTGCTGCGCGACAAGCAGGC
GCAGCTGGACGCGCTGCACGCCGAGCTGCAGCAGCTGCGCGCGGACAGCG
CGCGGCTCGGCGACGTGCTGCAGCGGCAGGAGCGCGACGACATCGACGTG
CTGCAGATCGCGGCGCAGCGCGACGGGCTCAAGAAGGCGCTGGCCAAGGC
GTGCTCCGACCGGGCGGCGGCCGAGGCGGAGCGCGCCGACGCGCAGCAGC
TGGTGGCGCTGGGGCGCGCCGAGCTGGGCGAGGTGGTCAAGGCGTACAAC
AAGGCGGTGGAGCGGCTGCAGCCGGGCGACGCGGAGCTCAAGGTGGCGGT
GTGCGGCGATGTGGGCGGCGGCGTGCTGGACAAGGACGTGAAGGCGGCGG
TGCTGCCGCGGCTGGTGGCGCAAAAGGAGGAGTTGGCGGGCATGGCGCCC
AAGCTGCACGAGGAGATCCACGTGCTGCGCGAGCGCGGGGACGAGGTTGA
GGAGCGGCTGATCATGCTGCGGCACTCGCTGGGCATGCTGCAGGCCAAGA
AGAGCAAGCTGGAGGCGGAGTACCAGGCGAAGAAGAGCCACAACAACGAG
CTGCTGAGGCAGAGGCAGGAAATGGTGGTGGTGGGCGGCGAGAAGATCGC
GGCGGAACGCGAGCGTCTGCACGAATTGATGAGGTGCAGGCTGAAGGAGC
ACAAGGAGCTAGAGGAGCAGATGAGCGAGTACGAGGAGCTGTGTGGCAGG
TACGCGGAACGGTGGACGGCGAACACGGAGAAGTGTAACGCGGCGTTTGA
GGAGCAGCAGCGGGCCGGGCGACACATTTTGGCCAAAGTCGGGGAATACT
TTGAAGGGCGGCAGAACGCGCTGGTGGAGGAGGGCTGA