Gvermi12918.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12918.t2
Unique NameGvermi12918.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2080687..2082397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118161.KB235922_gene732
PFAMsFAD_binding_3
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Evalue7.15e-40
EggNOG OGsCOG0654@1|root,COG0654@2|Bacteria,1G3KH@1117|Cyanobacteria
EC1.14.13.9
DescriptionCOG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12918Gvermi12918Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2080687..2082397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12918.t2Gvermi12918.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2080687..2082397 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12918.t2.start1Gvermi12918.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2080687..2080689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12918.t2.CDS1Gvermi12918.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2080687..2081877 +
Gvermi12918.t2.CDS2Gvermi12918.t2.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2082104..2082397 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12918.t2.exon1Gvermi12918.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2080687..2081877 +
Gvermi12918.t2.exon2Gvermi12918.t2.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2082104..2082397 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12918.t2.intron1Gvermi12918.t2.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2081878..2082103 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12918.t2.stop1Gvermi12918.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2082395..2082397 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12918.t2 ID=Gvermi12918.t2|Name=Gvermi12918.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=495bp
MCANPSVPSHRIRAAKPTIIGAGPVGCVLALLLQEHHIPVTLIDSTPRNI
SFEAGRAYSFGINIRGLQVLSKLPSLLRRVEEMATLSFPFQRHIRQPDGS
WKVSSFGKVRPGKNVSQSILRHKFVSLCRDEIDTASFVTCMYGNTLEDIQ
VDGKGGFQLRLKSASGHVTSLDTQLLLACDGVRSGCAQLLQNVPMVSSRG
LHRISFPSYTPEYNAKILIVNPDFYKSEPGSNVDDDRYAPDHFKMYSFRE
KYSSKRKDSVMLDIFPQSKQIIEEQGGVRAAIRAHPSHVIWRLDDVKAAM
DVLEKEVPLLRPRQVVSDESMASFLSVGPLKLPKVARRASLCATCAKGSA
PGAIVFIGDAAHSVPPDVGEGLNAGLQDAYVFAKTLIEGEVDDTPAKVAQ
RYESAREPETRAFMRFAQRALIALSGSRLDAANFALRRMLAKRFPGLFYA
PAPLLRGECVSFEEIMKRADQTTMRLFIATGLISGIVSMFILYL*
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spliced messenger RNA

>Gvermi12918.t2 ID=Gvermi12918.t2|Name=Gvermi12918.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at ScGOVlb_425:2080687..2082397+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCCAACCCCTCGGTTCCATCTCATCGCATACGCGCTGCCAAACC
TACCATTATTGGTGCCGGTCCTGTCGGCTGTGTTCTCGCACTTCTTCTCC
AAGAACACCACATACCCGTCACTCTAATTGATTCCACGCCTCGCAACATC
TCTTTCGAGGCTGGCCGCGCCTATTCGTTTGGAATTAACATTCGTGGATT
GCAAGTCCTCTCTAAGCTTCCGAGTCTACTGCGTCGGGTTGAGGAGATGG
CCACACTTTCATTCCCTTTTCAGCGACATATTCGACAACCTGATGGTTCG
TGGAAAGTTTCCTCTTTCGGCAAGGTGAGACCTGGCAAGAATGTTTCCCA
GTCCATCCTAAGGCACAAGTTTGTGTCATTGTGTCGAGATGAGATTGATA
CCGCCTCCTTCGTAACGTGCATGTACGGCAACACACTAGAAGACATTCAG
GTGGACGGCAAGGGTGGCTTTCAATTGCGTTTGAAGTCCGCTTCAGGACA
TGTCACTTCTCTTGATACTCAACTGCTTCTCGCCTGTGATGGAGTTCGGT
CTGGGTGCGCACAACTCTTACAGAACGTACCGATGGTTTCTTCGCGCGGC
TTGCACCGTATCTCATTCCCGAGTTACACCCCTGAGTATAACGCAAAGAT
TCTTATTGTGAATCCAGACTTTTACAAAAGCGAACCCGGCAGTAATGTCG
ACGACGACAGATATGCACCGGACCACTTCAAGATGTACAGCTTTCGCGAA
AAATATAGTTCGAAAAGGAAGGACTCCGTTATGCTGGACATCTTCCCACA
GTCAAAACAAATTATAGAAGAACAGGGCGGTGTACGTGCAGCGATCCGGG
CGCATCCTTCCCACGTCATCTGGCGCCTTGATGATGTGAAAGCTGCGATG
GATGTTCTGGAGAAAGAAGTTCCTTTGCTACGACCTCGTCAAGTTGTCAG
TGATGAATCCATGGCCTCATTTCTCTCAGTTGGTCCATTGAAGCTTCCCA
AAGTTGCACGTCGGGCTTCGCTTTGTGCAACATGTGCGAAAGGCTCTGCT
CCCGGCGCTATCGTGTTTATCGGAGATGCAGCACATTCGGTCCCTCCCGA
TGTTGGAGAAGGTCTTAATGCAGGTCTTCAAGACGCTTATGTATTTGCTA
AGACCTTGATAGAAGGTGAGGTTGATGACACGCCTGCGAAGGTTGCGCAG
AGATATGAGAGCGCGCGAGAACCGGAAACTCGTGCATTTATGAGATTTGC
TCAAAGAGCTCTTATTGCGCTATCCGGTTCTCGATTGGATGCGGCCAACT
TTGCTTTGAGACGTATGTTGGCCAAACGATTTCCTGGTTTGTTTTATGCA
CCGGCACCACTTTTAAGAGGTGAATGTGTTTCTTTTGAGGAAATAATGAA
AAGGGCGGATCAAACCACGATGCGGTTGTTCATTGCTACAGGCCTGATCT
CAGGAATCGTCAGCATGTTTATTTTGTACCTGTGA
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protein sequence of Gvermi12918.t2

>Gvermi12918.t2 ID=Gvermi12918.t2|Name=Gvermi12918.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=495bp
MCANPSVPSHRIRAAKPTIIGAGPVGCVLALLLQEHHIPVTLIDSTPRNI
SFEAGRAYSFGINIRGLQVLSKLPSLLRRVEEMATLSFPFQRHIRQPDGS
WKVSSFGKVRPGKNVSQSILRHKFVSLCRDEIDTASFVTCMYGNTLEDIQ
VDGKGGFQLRLKSASGHVTSLDTQLLLACDGVRSGCAQLLQNVPMVSSRG
LHRISFPSYTPEYNAKILIVNPDFYKSEPGSNVDDDRYAPDHFKMYSFRE
KYSSKRKDSVMLDIFPQSKQIIEEQGGVRAAIRAHPSHVIWRLDDVKAAM
DVLEKEVPLLRPRQVVSDESMASFLSVGPLKLPKVARRASLCATCAKGSA
PGAIVFIGDAAHSVPPDVGEGLNAGLQDAYVFAKTLIEGEVDDTPAKVAQ
RYESAREPETRAFMRFAQRALIALSGSRLDAANFALRRMLAKRFPGLFYA
PAPLLRGECVSFEEIMKRADQTTMRLFIATGLISGIVSMFILYL*
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mRNA from alignment at ScGOVlb_425:2080687..2082397+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12918.t2 ID=Gvermi12918.t2|Name=Gvermi12918.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1711bp|location=Sequence derived from alignment at ScGOVlb_425:2080687..2082397+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCGCCAACCCCTCGGTTCCATCTCATCGCATACGCGCTGCCAAACC
TACCATTATTGGTGCCGGTCCTGTCGGCTGTGTTCTCGCACTTCTTCTCC
AAGAACACCACATACCCGTCACTCTAATTGATTCCACGCCTCGCAACATC
TCTTTCGAGGCTGGCCGCGCCTATTCGTTTGGAATTAACATTCGTGGATT
GCAAGTCCTCTCTAAGCTTCCGAGTCTACTGCGTCGGGTTGAGGAGATGG
CCACACTTTCATTCCCTTTTCAGCGACATATTCGACAACCTGATGGTTCG
TGGAAAGTTTCCTCTTTCGGCAAGGTGAGACCTGGCAAGAATGTTTCCCA
GTCCATCCTAAGGCACAAGTTTGTGTCATTGTGTCGAGATGAGATTGATA
CCGCCTCCTTCGTAACGTGCATGTACGGCAACACACTAGAAGACATTCAG
GTGGACGGCAAGGGTGGCTTTCAATTGCGTTTGAAGTCCGCTTCAGGACA
TGTCACTTCTCTTGATACTCAACTGCTTCTCGCCTGTGATGGAGTTCGGT
CTGGGTGCGCACAACTCTTACAGAACGTACCGATGGTTTCTTCGCGCGGC
TTGCACCGTATCTCATTCCCGAGTTACACCCCTGAGTATAACGCAAAGAT
TCTTATTGTGAATCCAGACTTTTACAAAAGCGAACCCGGCAGTAATGTCG
ACGACGACAGATATGCACCGGACCACTTCAAGATGTACAGCTTTCGCGAA
AAATATAGTTCGAAAAGGAAGGACTCCGTTATGCTGGACATCTTCCCACA
GTCAAAACAAATTATAGAAGAACAGGGCGGTGTACGTGCAGCGATCCGGG
CGCATCCTTCCCACGTCATCTGGCGCCTTGATGATGTGAAAGCTGCGATG
GATGTTCTGGAGAAAGAAGTTCCTTTGCTACGACCTCGTCAAGTTGTCAG
TGATGAATCCATGGCCTCATTTCTCTCAGTTGGTCCATTGAAGCTTCCCA
AAGTTGCACGTCGGGCTTCGCTTTGTGCAACATGTGCGAAAGGCTCTGCT
CCCGGCGCTATCGTGTTTATCGGAGATGCAGCACATTCGGTCCCTCCCGA
TGTTGGAGAAGGTCTTAATGCAGGTCTTCAAGACGCTTATGTATTTGCTA
AGACCTTGATAGAAGGTGAGGTTGATGACACGCCTGCGAAGGTTGCGCAG
AGATATGAGAGCGCGCGAGAACCGGAAACTCGTGCATTTATGAGATTTGC
TCAAAGAGCTCTTATTGCGCTATCCGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTGCCTAAGACCTTGATAGAAGGTGAGGTTG
ATGACACGCCTGCGAAGGTTGCGCAGAGATATGAGAGCGCGCGAGAACCG
GAAACTCGTGCATTTATGAGATTTGCTCAAAGAGCTCTTATTGCGCTATC
CGGTTCTCGATTGGATGCGGCCAACTTTGCTTTGAGACGTATGTTGGCCA
AACGATTTCCTGGTTTGTTTTATGCACCGGCACCACTTTTAAGAGGTGAA
TGTGTTTCTTTTGAGGAAATAATGAAAAGGGCGGATCAAACCACGATGCG
GTTGTTCATTGCTACAGGCCTGATCTCAGGAATCGTCAGCATGTTTATTT
TGTACCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:2080687..2082397+

>Gvermi12918.t2 ID=Gvermi12918.t2|Name=Gvermi12918.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1485bp|location=Sequence derived from alignment at ScGOVlb_425:2080687..2082397+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCGCCAACCCCTCGGTTCCATCTCATCGCATACGCGCTGCCAAACC
TACCATTATTGGTGCCGGTCCTGTCGGCTGTGTTCTCGCACTTCTTCTCC
AAGAACACCACATACCCGTCACTCTAATTGATTCCACGCCTCGCAACATC
TCTTTCGAGGCTGGCCGCGCCTATTCGTTTGGAATTAACATTCGTGGATT
GCAAGTCCTCTCTAAGCTTCCGAGTCTACTGCGTCGGGTTGAGGAGATGG
CCACACTTTCATTCCCTTTTCAGCGACATATTCGACAACCTGATGGTTCG
TGGAAAGTTTCCTCTTTCGGCAAGGTGAGACCTGGCAAGAATGTTTCCCA
GTCCATCCTAAGGCACAAGTTTGTGTCATTGTGTCGAGATGAGATTGATA
CCGCCTCCTTCGTAACGTGCATGTACGGCAACACACTAGAAGACATTCAG
GTGGACGGCAAGGGTGGCTTTCAATTGCGTTTGAAGTCCGCTTCAGGACA
TGTCACTTCTCTTGATACTCAACTGCTTCTCGCCTGTGATGGAGTTCGGT
CTGGGTGCGCACAACTCTTACAGAACGTACCGATGGTTTCTTCGCGCGGC
TTGCACCGTATCTCATTCCCGAGTTACACCCCTGAGTATAACGCAAAGAT
TCTTATTGTGAATCCAGACTTTTACAAAAGCGAACCCGGCAGTAATGTCG
ACGACGACAGATATGCACCGGACCACTTCAAGATGTACAGCTTTCGCGAA
AAATATAGTTCGAAAAGGAAGGACTCCGTTATGCTGGACATCTTCCCACA
GTCAAAACAAATTATAGAAGAACAGGGCGGTGTACGTGCAGCGATCCGGG
CGCATCCTTCCCACGTCATCTGGCGCCTTGATGATGTGAAAGCTGCGATG
GATGTTCTGGAGAAAGAAGTTCCTTTGCTACGACCTCGTCAAGTTGTCAG
TGATGAATCCATGGCCTCATTTCTCTCAGTTGGTCCATTGAAGCTTCCCA
AAGTTGCACGTCGGGCTTCGCTTTGTGCAACATGTGCGAAAGGCTCTGCT
CCCGGCGCTATCGTGTTTATCGGAGATGCAGCACATTCGGTCCCTCCCGA
TGTTGGAGAAGGTCTTAATGCAGGTCTTCAAGACGCTTATGTATTTGCTA
AGACCTTGATAGAAGGTGAGGTTGATGACACGCCTGCGAAGGTTGCGCAG
AGATATGAGAGCGCGCGAGAACCGGAAACTCGTGCATTTATGAGATTTGC
TCAAAGAGCTCTTATTGCGCTATCCGGTTCTCGATTGGATGCGGCCAACT
TTGCTTTGAGACGTATGTTGGCCAAACGATTTCCTGGTTTGTTTTATGCA
CCGGCACCACTTTTAAGAGGTGAATGTGTTTCTTTTGAGGAAATAATGAA
AAGGGCGGATCAAACCACGATGCGGTTGTTCATTGCTACAGGCCTGATCT
CAGGAATCGTCAGCATGTTTATTTTGTACCTGTGA
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