Gvermi12915.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12915.t1
Unique Name	Gvermi12915.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	199

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:2074112..2074708 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109871.XP_006681826.1
Preferred name	TWISTNB
PFAMs	SHS2_Rpb7-N
Max annot lvl	33154\|Opisthokonta
KEGG rclass	RC02795
KEGG ko	ko:K03004
KEGG Reaction	R00435,R00441,R00442,R00443
KEGG Pathway	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG Module	M00182
GOs	GO:0000428,GO:0001054,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034097,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042221,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:1990823,GO:1990830
Evalue	8.78e-12
EggNOG OGs	KOG4134@1\|root,KOG4134@2759\|Eukaryota,38GF9@33154\|Opisthokonta
Description	transcription by RNA polymerase I
COG category	K
BRITE	br01611,ko00000,ko00001,ko00002,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12915	Gvermi12915	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 2074112..2074708 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12915.t1.start1	Gvermi12915.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 2074112..2074114 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12915.t1.CDS1	Gvermi12915.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 2074112..2074708 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12915.t1.exon1	Gvermi12915.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 2074112..2074708 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12915.t1.stop1	Gvermi12915.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 2074706..2074708 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12915.t1	Gvermi12915.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 2074112..2074708 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:2074112..2074708+
coding sequence from alignment at ScGOVlb_425:2074112..2074708+

mRNA sequence

>Gvermi12915.t1 ID=Gvermi12915.t1|Name=Gvermi12915.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=199bp
MPSPTLGTTWRLLEARVHLALSPTQLLDPATSATQAAFEKLLMRYNHSLK
GVVVANVGPLKLLTKPTFIDASPFAHVVGRISLLLFNPPAGSVLVGVINY
IGPDHIALRVFRTFHAVLPLHDVANMFQFDASYPKKWTRYDEHAAPENDL
TLGRQVRFVVQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLE*

spliced messenger RNA

>Gvermi12915.t1 ID=Gvermi12915.t1|Name=Gvermi12915.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp|location=Sequence derived from alignment at ScGOVlb_425:2074112..2074708+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCGCCTACGCTTGGGACCACTTGGCGGCTACTGGAAGCGCGGGT
GCACCTGGCGCTTAGTCCCACGCAACTGCTGGACCCAGCCACCTCCGCCA
CGCAAGCAGCTTTCGAAAAGCTGCTCATGCGCTACAACCACAGTCTCAAG
GGCGTCGTCGTGGCCAACGTTGGGCCGCTCAAGCTTCTCACGAAGCCAAC
CTTCATCGATGCGTCACCGTTTGCCCACGTTGTGGGCCGTATCTCGTTGC
TGCTTTTCAACCCTCCTGCCGGCTCCGTTCTGGTGGGTGTCATCAATTAC
ATCGGGCCGGATCACATCGCACTCAGGGTGTTTCGCACCTTTCACGCCGT
TCTTCCGCTGCACGATGTCGCAAATATGTTCCAGTTTGATGCAAGTTATC
CCAAAAAATGGACGAGGTATGATGAACATGCCGCGCCAGAAAACGACCTT
ACACTTGGCAGGCAGGTCAGATTCGTCGTTCAGGAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTAGAGTAG

protein sequence of Gvermi12915.t1

>Gvermi12915.t1 ID=Gvermi12915.t1|Name=Gvermi12915.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=199bp
MPSPTLGTTWRLLEARVHLALSPTQLLDPATSATQAAFEKLLMRYNHSLK
GVVVANVGPLKLLTKPTFIDASPFAHVVGRISLLLFNPPAGSVLVGVINY
IGPDHIALRVFRTFHAVLPLHDVANMFQFDASYPKKWTRYDEHAAPENDL
TLGRQVRFVVQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLE*

mRNA from alignment at ScGOVlb_425:2074112..2074708+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12915.t1 ID=Gvermi12915.t1|Name=Gvermi12915.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp|location=Sequence derived from alignment at ScGOVlb_425:2074112..2074708+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCGCCTACGCTTGGGACCACTTGGCGGCTACTGGAAGCGCGGGT
GCACCTGGCGCTTAGTCCCACGCAACTGCTGGACCCAGCCACCTCCGCCA
CGCAAGCAGCTTTCGAAAAGCTGCTCATGCGCTACAACCACAGTCTCAAG
GGCGTCGTCGTGGCCAACGTTGGGCCGCTCAAGCTTCTCACGAAGCCAAC
CTTCATCGATGCGTCACCGTTTGCCCACGTTGTGGGCCGTATCTCGTTGC
TGCTTTTCAACCCTCCTGCCGGCTCCGTTCTGGTGGGTGTCATCAATTAC
ATCGGGCCGGATCACATCGCACTCAGGGTGTTTCGCACCTTTCACGCCGT
TCTTCCGCTGCACGATGTCGCAAATATGTTCCAGTTTGATGCAAGTTATC
CCAAAAAATGGACGAGGTATGATGAACATGCCGCGCCAGAAAACGACCTT
ACACTTGGCAGGCAGGTCAGATTCGTCGTTCAGGAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTAGAGTAG

Coding sequence (CDS) from alignment at ScGOVlb_425:2074112..2074708+

>Gvermi12915.t1 ID=Gvermi12915.t1|Name=Gvermi12915.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=597bp|location=Sequence derived from alignment at ScGOVlb_425:2074112..2074708+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCGCCTACGCTTGGGACCACTTGGCGGCTACTGGAAGCGCGGGT
GCACCTGGCGCTTAGTCCCACGCAACTGCTGGACCCAGCCACCTCCGCCA
CGCAAGCAGCTTTCGAAAAGCTGCTCATGCGCTACAACCACAGTCTCAAG
GGCGTCGTCGTGGCCAACGTTGGGCCGCTCAAGCTTCTCACGAAGCCAAC
CTTCATCGATGCGTCACCGTTTGCCCACGTTGTGGGCCGTATCTCGTTGC
TGCTTTTCAACCCTCCTGCCGGCTCCGTTCTGGTGGGTGTCATCAATTAC
ATCGGGCCGGATCACATCGCACTCAGGGTGTTTCGCACCTTTCACGCCGT
TCTTCCGCTGCACGATGTCGCAAATATGTTCCAGTTTGATGCAAGTTATC
CCAAAAAATGGACGAGGTATGATGAACATGCCGCGCCAGAAAACGACCTT
ACACTTGGCAGGCAGGTCAGATTCGTCGTTCAGGAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTAGAGTAG