Gvermi12912.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12912.t1
Unique NameGvermi12912.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2069440..2070549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704890.1
Preferred nameIST1
PFAMsIst1
Max annot lvl2759|Eukaryota
KEGG rclassRC00014
KEGG koko:K03453,ko:K10526,ko:K19476
KEGG TC2.A.28
KEGG ReactionR07887
KEGG Pathwayko00592,ko01100,ko01110,ko04144,map00592,map01100,map01110,map04144
KEGG ModuleM00113
GOsGO:0000118,GO:0000302,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005886,GO:0005901,GO:0006325,GO:0006355,GO:0006464,GO:0006476,GO:0006508,GO:0006511,GO:0006515,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006979,GO:0006996,GO:0007034,GO:0008013,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009636,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010310,GO:0010468,GO:0010469,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010629,GO:0010632,GO:0010634,GO:0010638,GO:0010646,GO:0010647,GO:0010727,GO:0010821,GO:0010822,GO:0010869,GO:0010870,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0016234,GO:0016235,GO:0016239,GO:0016241,GO:0016569,GO:0016570,GO:0016575,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018205,GO:0019213,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022607,GO:0023051,GO:0023056,GO:0030030,GO:0030031,GO:0030162,GO:0030163,GO:0030334,GO:0030335,GO:0030424,GO:0030425,GO:0031072,GO:0031252,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031410,GO:0031593,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032269,GO:0032270,GO:0032418,GO:0032459,GO:0032461,GO:0032509,GO:0032511,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033143,GO:0033365,GO:0033554,GO:0033558,GO:0034599,GO:0034613,GO:0034614,GO:0034983,GO:0035601,GO:0035690,GO:0035966,GO:0035967,GO:0036211,GO:0036477,GO:0040012,GO:0040017,GO:0040029,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042542,GO:0042826,GO:0042886,GO:0042903,GO:0042995,GO:0043005,GO:0043014,GO:0043025,GO:0043067,GO:0043068,GO:0043086,GO:0043162,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043242,GO:0043244,GO:0043254,GO:0043328,GO:0043412,GO:0043565,GO:0043632,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0044853,GO:0044877,GO:0045121,GO:0045184,GO:0045324,GO:0045861,GO:0045892,GO:0045934,GO:0045937,GO:0046677,GO:0046907,GO:0048156,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051270,GO:0051272,GO:0051276,GO:0051341,GO:0051354,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051716,GO:0051787,GO:0051788,GO:0051879,GO:0060255,GO:0060271,GO:0060632,GO:0060765,GO:0061734,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070301,GO:0070727,GO:0070840,GO:0070841,GO:0070842,GO:0070843,GO:0070844,GO:0070845,GO:0070846,GO:0070848,GO:0070887,GO:0070925,GO:0071236,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0080134,GO:0080135,GO:0090034,GO:0090035,GO:0090042,GO:0097159,GO:0097237,GO:0097447,GO:0097458,GO:0097708,GO:0098589,GO:0098590,GO:0098732,GO:0098779,GO:0098780,GO:0098805,GO:0098857,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140030,GO:0140096,GO:1900407,GO:1900409,GO:1901031,GO:1901033,GO:1901298,GO:1901300,GO:1901363,GO:1901524,GO:1901526,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1901701,GO:1902494,GO:1902679,GO:1902882,GO:1902884,GO:1903146,GO:1903201,GO:1903205,GO:1903209,GO:1903506,GO:1903507,GO:1903599,GO:1904923,GO:1904925,GO:1905206,GO:1990837,GO:2000112,GO:2000113,GO:2000145,GO:2000147,GO:2000377,GO:2000378,GO:2001023,GO:2001025,GO:2001038,GO:2001040,GO:2001141
Evalue5.06e-24
EggNOG OGsKOG2027@1|root,KOG2027@2759|Eukaryota
Descriptionviral capsid secondary envelopment
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12912Gvermi12912Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2069440..2070549 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12912.t1.start1Gvermi12912.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2069440..2069442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12912.t1.CDS1Gvermi12912.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2069440..2070549 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12912.t1.exon1Gvermi12912.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2069440..2070549 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12912.t1.stop1Gvermi12912.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2070547..2070549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12912.t1Gvermi12912.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2069440..2070549 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12912.t1 ID=Gvermi12912.t1|Name=Gvermi12912.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=370bp
MKAMKGALARKFARANEQPAAPGPLSAPVAPATNASPVWDATRFRVLLKM
ANNRIEIQRGKKDNEVQATRIVIADHLRSHREPLARIQAERILRELSQIT
AFDVIETFIQLLQTQHNVLVVQRNFDAAPQDLKENVASVVFASSRLNVPE
LQTVCSMLRDHFGPSVIDPLRTLSGPNIKYINKTLAISLEGGTPDGYRVL
DELSSIATEHQINWIPPPEEIHLDQGIASRASDPGYYRPERLPQATNIPG
MSMPPAPSAPPSNIPGYTPYDNSPYGGAPSAPPPGFPPSAPPFDPSAGAP
GTLYPYPDHNAPGQPPSYIPPPPPFSHTSSSRDDRGPGDGGPSLPTPPSN
APFLNDDSLEARFRDLKKK*
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spliced messenger RNA

>Gvermi12912.t1 ID=Gvermi12912.t1|Name=Gvermi12912.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at ScGOVlb_425:2069440..2070549+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCATGAAAGGTGCTCTCGCGCGAAAGTTCGCTCGCGCTAATGA
GCAACCCGCTGCCCCGGGCCCCTTGTCGGCGCCAGTCGCTCCCGCCACGA
ACGCCTCCCCCGTCTGGGATGCCACTCGTTTTCGTGTATTGCTCAAAATG
GCTAATAATCGCATCGAAATCCAGCGCGGAAAGAAGGACAATGAAGTACA
GGCCACACGCATCGTCATCGCCGACCACCTGCGCTCTCACAGGGAACCCC
TTGCGCGAATTCAAGCCGAAAGAATTCTGCGCGAGCTCTCTCAGATTACC
GCATTCGATGTCATTGAGACCTTCATTCAACTGCTCCAAACGCAACACAA
CGTGCTCGTTGTGCAGAGGAATTTCGACGCTGCCCCTCAAGACCTGAAGG
AAAATGTCGCCTCGGTCGTATTTGCCTCGTCCAGACTCAATGTGCCGGAG
CTTCAAACTGTGTGTTCGATGCTTCGTGATCACTTTGGCCCATCCGTAAT
CGACCCATTGCGAACCCTTTCGGGCCCGAATATAAAGTATATCAACAAGA
CCTTGGCCATCAGTCTCGAAGGGGGAACTCCCGATGGCTACCGAGTGCTG
GATGAGCTGTCTAGCATTGCTACAGAACATCAGATTAACTGGATTCCGCC
GCCCGAGGAAATTCATCTTGACCAAGGAATCGCTTCACGTGCGTCGGACC
CAGGTTATTATCGACCAGAACGTTTGCCGCAAGCGACTAATATTCCCGGC
ATGTCAATGCCACCCGCACCTTCTGCACCGCCCAGCAATATTCCGGGTTA
CACACCTTATGACAACTCGCCGTATGGTGGTGCACCGTCTGCACCGCCGC
CAGGATTCCCGCCATCTGCCCCTCCGTTTGATCCGTCCGCCGGTGCTCCG
GGGACTTTGTATCCGTACCCGGATCATAATGCGCCTGGACAGCCGCCCAG
CTATATTCCGCCTCCCCCGCCGTTCTCGCACACATCATCGAGCCGGGACG
ACCGTGGCCCAGGTGATGGCGGCCCATCGTTACCTACTCCCCCTTCTAAT
GCCCCATTTTTGAATGACGATTCATTGGAAGCAAGATTTAGAGACCTGAA
AAAGAAATAG
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protein sequence of Gvermi12912.t1

>Gvermi12912.t1 ID=Gvermi12912.t1|Name=Gvermi12912.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=370bp
MKAMKGALARKFARANEQPAAPGPLSAPVAPATNASPVWDATRFRVLLKM
ANNRIEIQRGKKDNEVQATRIVIADHLRSHREPLARIQAERILRELSQIT
AFDVIETFIQLLQTQHNVLVVQRNFDAAPQDLKENVASVVFASSRLNVPE
LQTVCSMLRDHFGPSVIDPLRTLSGPNIKYINKTLAISLEGGTPDGYRVL
DELSSIATEHQINWIPPPEEIHLDQGIASRASDPGYYRPERLPQATNIPG
MSMPPAPSAPPSNIPGYTPYDNSPYGGAPSAPPPGFPPSAPPFDPSAGAP
GTLYPYPDHNAPGQPPSYIPPPPPFSHTSSSRDDRGPGDGGPSLPTPPSN
APFLNDDSLEARFRDLKKK*
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mRNA from alignment at ScGOVlb_425:2069440..2070549+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12912.t1 ID=Gvermi12912.t1|Name=Gvermi12912.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at ScGOVlb_425:2069440..2070549+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGCCATGAAAGGTGCTCTCGCGCGAAAGTTCGCTCGCGCTAATGA
GCAACCCGCTGCCCCGGGCCCCTTGTCGGCGCCAGTCGCTCCCGCCACGA
ACGCCTCCCCCGTCTGGGATGCCACTCGTTTTCGTGTATTGCTCAAAATG
GCTAATAATCGCATCGAAATCCAGCGCGGAAAGAAGGACAATGAAGTACA
GGCCACACGCATCGTCATCGCCGACCACCTGCGCTCTCACAGGGAACCCC
TTGCGCGAATTCAAGCCGAAAGAATTCTGCGCGAGCTCTCTCAGATTACC
GCATTCGATGTCATTGAGACCTTCATTCAACTGCTCCAAACGCAACACAA
CGTGCTCGTTGTGCAGAGGAATTTCGACGCTGCCCCTCAAGACCTGAAGG
AAAATGTCGCCTCGGTCGTATTTGCCTCGTCCAGACTCAATGTGCCGGAG
CTTCAAACTGTGTGTTCGATGCTTCGTGATCACTTTGGCCCATCCGTAAT
CGACCCATTGCGAACCCTTTCGGGCCCGAATATAAAGTATATCAACAAGA
CCTTGGCCATCAGTCTCGAAGGGGGAACTCCCGATGGCTACCGAGTGCTG
GATGAGCTGTCTAGCATTGCTACAGAACATCAGATTAACTGGATTCCGCC
GCCCGAGGAAATTCATCTTGACCAAGGAATCGCTTCACGTGCGTCGGACC
CAGGTTATTATCGACCAGAACGTTTGCCGCAAGCGACTAATATTCCCGGC
ATGTCAATGCCACCCGCACCTTCTGCACCGCCCAGCAATATTCCGGGTTA
CACACCTTATGACAACTCGCCGTATGGTGGTGCACCGTCTGCACCGCCGC
CAGGATTCCCGCCATCTGCCCCTCCGTTTGATCCGTCCGCCGGTGCTCCG
GGGACTTTGTATCCGTACCCGGATCATAATGCGCCTGGACAGCCGCCCAG
CTATATTCCGCCTCCCCCGCCGTTCTCGCACACATCATCGAGCCGGGACG
ACCGTGGCCCAGGTGATGGCGGCCCATCGTTACCTACTCCCCCTTCTAAT
GCCCCATTTTTGAATGACGATTCATTGGAAGCAAGATTTAGAGACCTGAA
AAAGAAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:2069440..2070549+

>Gvermi12912.t1 ID=Gvermi12912.t1|Name=Gvermi12912.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1110bp|location=Sequence derived from alignment at ScGOVlb_425:2069440..2070549+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGCCATGAAAGGTGCTCTCGCGCGAAAGTTCGCTCGCGCTAATGA
GCAACCCGCTGCCCCGGGCCCCTTGTCGGCGCCAGTCGCTCCCGCCACGA
ACGCCTCCCCCGTCTGGGATGCCACTCGTTTTCGTGTATTGCTCAAAATG
GCTAATAATCGCATCGAAATCCAGCGCGGAAAGAAGGACAATGAAGTACA
GGCCACACGCATCGTCATCGCCGACCACCTGCGCTCTCACAGGGAACCCC
TTGCGCGAATTCAAGCCGAAAGAATTCTGCGCGAGCTCTCTCAGATTACC
GCATTCGATGTCATTGAGACCTTCATTCAACTGCTCCAAACGCAACACAA
CGTGCTCGTTGTGCAGAGGAATTTCGACGCTGCCCCTCAAGACCTGAAGG
AAAATGTCGCCTCGGTCGTATTTGCCTCGTCCAGACTCAATGTGCCGGAG
CTTCAAACTGTGTGTTCGATGCTTCGTGATCACTTTGGCCCATCCGTAAT
CGACCCATTGCGAACCCTTTCGGGCCCGAATATAAAGTATATCAACAAGA
CCTTGGCCATCAGTCTCGAAGGGGGAACTCCCGATGGCTACCGAGTGCTG
GATGAGCTGTCTAGCATTGCTACAGAACATCAGATTAACTGGATTCCGCC
GCCCGAGGAAATTCATCTTGACCAAGGAATCGCTTCACGTGCGTCGGACC
CAGGTTATTATCGACCAGAACGTTTGCCGCAAGCGACTAATATTCCCGGC
ATGTCAATGCCACCCGCACCTTCTGCACCGCCCAGCAATATTCCGGGTTA
CACACCTTATGACAACTCGCCGTATGGTGGTGCACCGTCTGCACCGCCGC
CAGGATTCCCGCCATCTGCCCCTCCGTTTGATCCGTCCGCCGGTGCTCCG
GGGACTTTGTATCCGTACCCGGATCATAATGCGCCTGGACAGCCGCCCAG
CTATATTCCGCCTCCCCCGCCGTTCTCGCACACATCATCGAGCCGGGACG
ACCGTGGCCCAGGTGATGGCGGCCCATCGTTACCTACTCCCCCTTCTAAT
GCCCCATTTTTGAATGACGATTCATTGGAAGCAAGATTTAGAGACCTGAA
AAAGAAATAG
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