Gvermi12909.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12909.t1
Unique NameGvermi12909.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2030787..2031627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.10065
PFAMsPCO_ADO
Max annot lvl4776|Peronosporales
KEGG rclassRC00404
KEGG koko:K10712
KEGG ReactionR02467
KEGG Pathwayko00430,ko01100,map00430,map01100
Evalue1.06e-26
EggNOG OGsKOG4281@1|root,KOG4281@2759|Eukaryota,3QAT1@4776|Peronosporales
EC1.13.11.19
DescriptionPCO_ADO
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12909Gvermi12909Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2030787..2031627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12909.t1Gvermi12909.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2030787..2031627 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12909.t1.stop1Gvermi12909.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2030787..2030789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12909.t1.CDS1Gvermi12909.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2030787..2030858 -
Gvermi12909.t1.CDS2Gvermi12909.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2030941..2031627 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12909.t1.exon1Gvermi12909.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2030787..2030858 -
Gvermi12909.t1.exon2Gvermi12909.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2030941..2031627 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12909.t1.intron1Gvermi12909.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2030859..2030940 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12909.t1.start1Gvermi12909.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2031625..2031627 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12909.t1 ID=Gvermi12909.t1|Name=Gvermi12909.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=253bp
MGRLRAFISSVFPRFIRSQRIAPLCSLQKVFDVANTAVQHARSASPDKQF
TLSDAQLNELEHTVSTMDLDDLVIERQRFIDEADDCEDHDSVVYVPVAKN
DNCTLAVFVIPPGRGIPLHDHPHMYVVSRVLWGKLELKAYDIYPSESVNL
ANGNMYAKEKEPLVVTAGQVKSLSPTLSNVHTFYTSEWTAVFDVLLPPYD
SEQHRDCTYYEVLQLDDSQKHTQADVILKKTPCPDDFRTAASDYIGVQVQ
VD*
back to top

spliced messenger RNA

>Gvermi12909.t1 ID=Gvermi12909.t1|Name=Gvermi12909.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=759bp|location=Sequence derived from alignment at ScGOVlb_425:2030787..2031627- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGTCTTCGGGCGTTCATCTCATCTGTATTCCCGCGATTCATCCG
TTCCCAGCGAATAGCCCCCCTTTGTTCGTTGCAAAAGGTGTTCGATGTGG
CCAACACCGCCGTGCAGCATGCGCGTTCTGCCTCGCCAGATAAGCAGTTC
ACGCTTAGTGATGCCCAACTGAACGAGCTCGAGCACACCGTCTCCACTAT
GGATCTCGACGATCTCGTCATTGAAAGACAACGTTTCATCGATGAAGCTG
ACGATTGCGAAGACCACGATTCCGTTGTTTACGTCCCAGTCGCGAAGAAT
GATAACTGCACATTGGCAGTGTTTGTCATCCCGCCGGGAAGAGGCATTCC
TCTACATGACCATCCGCACATGTACGTTGTTTCCCGCGTGCTATGGGGCA
AGCTGGAGCTCAAAGCTTATGATATATACCCTTCCGAGTCTGTCAATCTC
GCCAATGGAAACATGTACGCGAAGGAAAAGGAACCGCTCGTCGTCACCGC
AGGCCAAGTCAAGAGCCTCAGCCCCACCCTTAGCAACGTTCATACTTTCT
ACACTTCCGAATGGACTGCCGTGTTTGATGTGCTACTACCGCCGTATGAT
TCCGAGCAGCACAGAGATTGCACCTACTACGAGGTTTTACAGTTGGACGA
CTCCCAAAAGCACACTCAAGCCGACGTCATTTTGAAAAAAACCCCTTGTC
CCGATGACTTCCGAACTGCCGCATCAGATTACATAGGTGTTCAAGTTCAA
GTCGATTAA
back to top

protein sequence of Gvermi12909.t1

>Gvermi12909.t1 ID=Gvermi12909.t1|Name=Gvermi12909.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=253bp
MGRLRAFISSVFPRFIRSQRIAPLCSLQKVFDVANTAVQHARSASPDKQF
TLSDAQLNELEHTVSTMDLDDLVIERQRFIDEADDCEDHDSVVYVPVAKN
DNCTLAVFVIPPGRGIPLHDHPHMYVVSRVLWGKLELKAYDIYPSESVNL
ANGNMYAKEKEPLVVTAGQVKSLSPTLSNVHTFYTSEWTAVFDVLLPPYD
SEQHRDCTYYEVLQLDDSQKHTQADVILKKTPCPDDFRTAASDYIGVQVQ
VD*
back to top

mRNA from alignment at ScGOVlb_425:2030787..2031627-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12909.t1 ID=Gvermi12909.t1|Name=Gvermi12909.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=841bp|location=Sequence derived from alignment at ScGOVlb_425:2030787..2031627- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTCGTCTTCGGGCGTTCATCTCATCTGTATTCCCGCGATTCATCCG
TTCCCAGCGAATAGCCCCCCTTTGTTCGTTGCAAAAGGTGTTCGATGTGG
CCAACACCGCCGTGCAGCATGCGCGTTCTGCCTCGCCAGATAAGCAGTTC
ACGCTTAGTGATGCCCAACTGAACGAGCTCGAGCACACCGTCTCCACTAT
GGATCTCGACGATCTCGTCATTGAAAGACAACGTTTCATCGATGAAGCTG
ACGATTGCGAAGACCACGATTCCGTTGTTTACGTCCCAGTCGCGAAGAAT
GATAACTGCACATTGGCAGTGTTTGTCATCCCGCCGGGAAGAGGCATTCC
TCTACATGACCATCCGCACATGTACGTTGTTTCCCGCGTGCTATGGGGCA
AGCTGGAGCTCAAAGCTTATGATATATACCCTTCCGAGTCTGTCAATCTC
GCCAATGGAAACATGTACGCGAAGGAAAAGGAACCGCTCGTCGTCACCGC
AGGCCAAGTCAAGAGCCTCAGCCCCACCCTTAGCAACGTTCATACTTTCT
ACACTTCCGAATGGACTGCCGTGTTTGATGTGCTACTACCGCCGTATGAT
TCCGAGCAGCACAGAGATTGCACCTACTACGAGGTTTTACAGTTGGACGA
CTCCCAAAAGCACACTCAAGCCGACGTCATTTTGAAAGTAAGCACTATCT
GCCCATACCTTTCTCTAAGTTCACGCGACATTCACTTTTCCTTGCATGAC
TAACTTTCAATCATCTCAGAAAACCCCTTGTCCCGATGACTTCCGAACTG
CCGCATCAGATTACATAGGTGTTCAAGTTCAAGTCGATTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:2030787..2031627-

>Gvermi12909.t1 ID=Gvermi12909.t1|Name=Gvermi12909.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=759bp|location=Sequence derived from alignment at ScGOVlb_425:2030787..2031627- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTCGTCTTCGGGCGTTCATCTCATCTGTATTCCCGCGATTCATCCG
TTCCCAGCGAATAGCCCCCCTTTGTTCGTTGCAAAAGGTGTTCGATGTGG
CCAACACCGCCGTGCAGCATGCGCGTTCTGCCTCGCCAGATAAGCAGTTC
ACGCTTAGTGATGCCCAACTGAACGAGCTCGAGCACACCGTCTCCACTAT
GGATCTCGACGATCTCGTCATTGAAAGACAACGTTTCATCGATGAAGCTG
ACGATTGCGAAGACCACGATTCCGTTGTTTACGTCCCAGTCGCGAAGAAT
GATAACTGCACATTGGCAGTGTTTGTCATCCCGCCGGGAAGAGGCATTCC
TCTACATGACCATCCGCACATGTACGTTGTTTCCCGCGTGCTATGGGGCA
AGCTGGAGCTCAAAGCTTATGATATATACCCTTCCGAGTCTGTCAATCTC
GCCAATGGAAACATGTACGCGAAGGAAAAGGAACCGCTCGTCGTCACCGC
AGGCCAAGTCAAGAGCCTCAGCCCCACCCTTAGCAACGTTCATACTTTCT
ACACTTCCGAATGGACTGCCGTGTTTGATGTGCTACTACCGCCGTATGAT
TCCGAGCAGCACAGAGATTGCACCTACTACGAGGTTTTACAGTTGGACGA
CTCCCAAAAGCACACTCAAGCCGACGTCATTTTGAAAAAAACCCCTTGTC
CCGATGACTTCCGAACTGCCGCATCAGATTACATAGGTGTTCAAGTTCAA
GTCGATTAA
back to top