Gvermi12907.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12907.t1
Unique NameGvermi12907.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length623
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2004090..2005958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMF090CT
Preferred nameCHO2
PFAMsPEMT
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060
KEGG koko:K16369
KEGG ReactionR02056
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
KEGG ModuleM00091
GOsGO:0003674,GO:0003824,GO:0004608,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006629,GO:0006644,GO:0006650,GO:0006656,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008610,GO:0008654,GO:0008757,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016741,GO:0019637,GO:0031224,GO:0032259,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045017,GO:0046470,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:0097164,GO:1901564,GO:1901566,GO:1901576
Evalue2.87e-85
EggNOG OGs28J4G@1|root,2QRGH@2759|Eukaryota
EC2.1.1.17
Descriptionphosphatidylethanolamine N-methyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12907Gvermi12907Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2004090..2005958 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12907.t1.stop1Gvermi12907.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2004090..2004092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12907.t1.CDS1Gvermi12907.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2004090..2005958 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12907.t1.exon1Gvermi12907.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2004090..2005958 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12907.t1.start1Gvermi12907.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2005956..2005958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12907.t1Gvermi12907.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2004090..2005958 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12907.t1 ID=Gvermi12907.t1|Name=Gvermi12907.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=623bp
MFKTLASPTMWGPAEYLTLLFVLAQLLTIPVMWLLPRAYFIAVFTFWRLA
YNVGIGALLHVQSKHASITKWLHALSPSARALVHWASTKSMRNDYAWDKL
PSCYNAWITFRALSMLILTNDGFSYFVLAVKCFNPFQTSAFWKLLICIPS
GIALIALSLWAKGAAHNVLGDFAWYWGDFFFLVDADLSFDGVFELFPHPM
YTVGYAAYYGAALICRSHALLAISLLAHISQLLFLALVEEPHIQKVYGSS
TSGSADPQPTTEDEATTPHSPPRSPPSLCDEFLHAAPRFPVIVSLAVAFS
AVAALAISSPPNSSKAVFLLLSWLVAHWALLFYALHTPEGDKTNNWMKLF
TSRGYSTFHAFSAWQLTYLASFIAKHTLFIIAASTFGPSKAPDTVSMSET
VSGVLTGVSLTAIAVVSLASTWNDIGYFGFFYGDFFVFTHEQKLKTSGMF
RYVTHPEATLGYLAYYGIAFIKQSRALFFLTIICQAIHVLFVIICESKHI
DATYMVSRNLTPLERAMATLPVVGTGCNMIRNGFDHMSHYVDTVGKTQAK
QTVRHLSVRKERLKADLNKSIAIARDKHMKPRTDELCSRAKSVVGDIDCA
SIVSMLGNRGIRVEAVSQSQVR*
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spliced messenger RNA

>Gvermi12907.t1 ID=Gvermi12907.t1|Name=Gvermi12907.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at ScGOVlb_425:2004090..2005958- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTAAGACCCTAGCCTCGCCAACCATGTGGGGACCCGCCGAGTACCT
AACCCTTCTTTTTGTCCTTGCGCAACTGCTCACCATTCCCGTCATGTGGC
TCTTGCCTCGCGCCTACTTCATAGCCGTTTTTACCTTCTGGCGTCTTGCG
TACAACGTCGGTATCGGCGCTTTGCTTCACGTTCAATCCAAACACGCCTC
CATAACTAAATGGCTTCACGCGCTTTCCCCCTCGGCCCGCGCCCTCGTGC
ATTGGGCTAGTACCAAATCCATGCGCAACGACTACGCCTGGGACAAACTC
CCGTCGTGCTACAATGCCTGGATCACCTTTCGCGCTCTCTCCATGCTTAT
TCTTACCAACGATGGCTTTTCGTACTTTGTGTTGGCCGTGAAGTGTTTCA
ACCCGTTTCAAACGTCCGCGTTTTGGAAGCTGCTCATCTGCATTCCGTCA
GGTATTGCCTTGATCGCTCTGTCTCTGTGGGCAAAGGGCGCTGCTCACAA
CGTCTTGGGTGATTTTGCCTGGTACTGGGGTGATTTCTTCTTTTTGGTCG
ACGCCGACCTCAGCTTTGACGGCGTTTTTGAGCTGTTTCCTCATCCTATG
TACACCGTGGGGTACGCTGCGTATTACGGGGCTGCGCTTATATGCCGCTC
TCATGCGCTGCTTGCGATATCTTTGCTTGCTCATATTTCGCAGCTCCTAT
TCCTTGCCCTTGTGGAGGAGCCACACATACAAAAGGTTTACGGTTCGAGT
ACGTCCGGTTCTGCGGATCCGCAGCCTACTACCGAAGATGAGGCGACCAC
TCCGCATAGCCCTCCAAGGTCTCCACCTTCTCTGTGTGACGAGTTTTTGC
ACGCCGCGCCGCGTTTTCCGGTCATTGTTTCCCTCGCCGTAGCGTTTAGC
GCCGTGGCTGCCCTAGCAATCTCTTCGCCCCCCAATAGTTCCAAAGCTGT
ATTCCTACTTCTTTCTTGGTTGGTCGCTCATTGGGCGCTTCTGTTTTATG
CGCTTCACACACCCGAAGGCGATAAGACCAATAACTGGATGAAGCTTTTC
ACGTCGAGGGGGTATTCGACGTTCCACGCGTTCTCTGCCTGGCAGCTTAC
TTACCTCGCCTCGTTCATAGCCAAACACACTCTATTTATTATCGCTGCCT
CAACGTTTGGGCCTTCCAAAGCACCGGACACTGTTTCAATGTCGGAAACA
GTGTCCGGTGTGCTGACCGGGGTTTCATTGACGGCGATCGCCGTAGTGAG
CCTGGCGTCCACCTGGAATGATATCGGGTACTTTGGCTTCTTTTATGGAG
ATTTCTTTGTGTTTACACACGAACAGAAGCTGAAAACCTCCGGGATGTTC
CGATACGTCACCCATCCCGAGGCCACTCTGGGGTATCTAGCATACTACGG
AATCGCTTTTATCAAGCAATCCCGCGCATTGTTCTTTCTCACGATTATTT
GCCAAGCGATCCATGTGCTGTTTGTGATTATCTGTGAATCGAAGCACATT
GACGCAACGTATATGGTTTCGAGAAATTTGACCCCCTTGGAGAGGGCGAT
GGCGACTCTTCCGGTTGTTGGTACCGGTTGCAATATGATCCGTAACGGTT
TTGACCACATGTCGCACTACGTTGATACCGTTGGCAAAACACAAGCCAAA
CAAACGGTTCGGCATCTTAGTGTTCGCAAGGAGCGACTGAAGGCCGACCT
GAACAAATCAATTGCAATCGCTCGTGATAAGCACATGAAGCCCAGGACGG
ACGAATTGTGCTCACGAGCAAAGTCAGTCGTAGGGGATATTGACTGTGCC
AGCATCGTTTCCATGTTGGGAAACCGTGGGATTCGTGTTGAGGCCGTATC
CCAGTCTCAAGTTAGGTAG
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protein sequence of Gvermi12907.t1

>Gvermi12907.t1 ID=Gvermi12907.t1|Name=Gvermi12907.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=623bp
MFKTLASPTMWGPAEYLTLLFVLAQLLTIPVMWLLPRAYFIAVFTFWRLA
YNVGIGALLHVQSKHASITKWLHALSPSARALVHWASTKSMRNDYAWDKL
PSCYNAWITFRALSMLILTNDGFSYFVLAVKCFNPFQTSAFWKLLICIPS
GIALIALSLWAKGAAHNVLGDFAWYWGDFFFLVDADLSFDGVFELFPHPM
YTVGYAAYYGAALICRSHALLAISLLAHISQLLFLALVEEPHIQKVYGSS
TSGSADPQPTTEDEATTPHSPPRSPPSLCDEFLHAAPRFPVIVSLAVAFS
AVAALAISSPPNSSKAVFLLLSWLVAHWALLFYALHTPEGDKTNNWMKLF
TSRGYSTFHAFSAWQLTYLASFIAKHTLFIIAASTFGPSKAPDTVSMSET
VSGVLTGVSLTAIAVVSLASTWNDIGYFGFFYGDFFVFTHEQKLKTSGMF
RYVTHPEATLGYLAYYGIAFIKQSRALFFLTIICQAIHVLFVIICESKHI
DATYMVSRNLTPLERAMATLPVVGTGCNMIRNGFDHMSHYVDTVGKTQAK
QTVRHLSVRKERLKADLNKSIAIARDKHMKPRTDELCSRAKSVVGDIDCA
SIVSMLGNRGIRVEAVSQSQVR*
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mRNA from alignment at ScGOVlb_425:2004090..2005958-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12907.t1 ID=Gvermi12907.t1|Name=Gvermi12907.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at ScGOVlb_425:2004090..2005958- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTAAGACCCTAGCCTCGCCAACCATGTGGGGACCCGCCGAGTACCT
AACCCTTCTTTTTGTCCTTGCGCAACTGCTCACCATTCCCGTCATGTGGC
TCTTGCCTCGCGCCTACTTCATAGCCGTTTTTACCTTCTGGCGTCTTGCG
TACAACGTCGGTATCGGCGCTTTGCTTCACGTTCAATCCAAACACGCCTC
CATAACTAAATGGCTTCACGCGCTTTCCCCCTCGGCCCGCGCCCTCGTGC
ATTGGGCTAGTACCAAATCCATGCGCAACGACTACGCCTGGGACAAACTC
CCGTCGTGCTACAATGCCTGGATCACCTTTCGCGCTCTCTCCATGCTTAT
TCTTACCAACGATGGCTTTTCGTACTTTGTGTTGGCCGTGAAGTGTTTCA
ACCCGTTTCAAACGTCCGCGTTTTGGAAGCTGCTCATCTGCATTCCGTCA
GGTATTGCCTTGATCGCTCTGTCTCTGTGGGCAAAGGGCGCTGCTCACAA
CGTCTTGGGTGATTTTGCCTGGTACTGGGGTGATTTCTTCTTTTTGGTCG
ACGCCGACCTCAGCTTTGACGGCGTTTTTGAGCTGTTTCCTCATCCTATG
TACACCGTGGGGTACGCTGCGTATTACGGGGCTGCGCTTATATGCCGCTC
TCATGCGCTGCTTGCGATATCTTTGCTTGCTCATATTTCGCAGCTCCTAT
TCCTTGCCCTTGTGGAGGAGCCACACATACAAAAGGTTTACGGTTCGAGT
ACGTCCGGTTCTGCGGATCCGCAGCCTACTACCGAAGATGAGGCGACCAC
TCCGCATAGCCCTCCAAGGTCTCCACCTTCTCTGTGTGACGAGTTTTTGC
ACGCCGCGCCGCGTTTTCCGGTCATTGTTTCCCTCGCCGTAGCGTTTAGC
GCCGTGGCTGCCCTAGCAATCTCTTCGCCCCCCAATAGTTCCAAAGCTGT
ATTCCTACTTCTTTCTTGGTTGGTCGCTCATTGGGCGCTTCTGTTTTATG
CGCTTCACACACCCGAAGGCGATAAGACCAATAACTGGATGAAGCTTTTC
ACGTCGAGGGGGTATTCGACGTTCCACGCGTTCTCTGCCTGGCAGCTTAC
TTACCTCGCCTCGTTCATAGCCAAACACACTCTATTTATTATCGCTGCCT
CAACGTTTGGGCCTTCCAAAGCACCGGACACTGTTTCAATGTCGGAAACA
GTGTCCGGTGTGCTGACCGGGGTTTCATTGACGGCGATCGCCGTAGTGAG
CCTGGCGTCCACCTGGAATGATATCGGGTACTTTGGCTTCTTTTATGGAG
ATTTCTTTGTGTTTACACACGAACAGAAGCTGAAAACCTCCGGGATGTTC
CGATACGTCACCCATCCCGAGGCCACTCTGGGGTATCTAGCATACTACGG
AATCGCTTTTATCAAGCAATCCCGCGCATTGTTCTTTCTCACGATTATTT
GCCAAGCGATCCATGTGCTGTTTGTGATTATCTGTGAATCGAAGCACATT
GACGCAACGTATATGGTTTCGAGAAATTTGACCCCCTTGGAGAGGGCGAT
GGCGACTCTTCCGGTTGTTGGTACCGGTTGCAATATGATCCGTAACGGTT
TTGACCACATGTCGCACTACGTTGATACCGTTGGCAAAACACAAGCCAAA
CAAACGGTTCGGCATCTTAGTGTTCGCAAGGAGCGACTGAAGGCCGACCT
GAACAAATCAATTGCAATCGCTCGTGATAAGCACATGAAGCCCAGGACGG
ACGAATTGTGCTCACGAGCAAAGTCAGTCGTAGGGGATATTGACTGTGCC
AGCATCGTTTCCATGTTGGGAAACCGTGGGATTCGTGTTGAGGCCGTATC
CCAGTCTCAAGTTAGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:2004090..2005958-

>Gvermi12907.t1 ID=Gvermi12907.t1|Name=Gvermi12907.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1869bp|location=Sequence derived from alignment at ScGOVlb_425:2004090..2005958- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTAAGACCCTAGCCTCGCCAACCATGTGGGGACCCGCCGAGTACCT
AACCCTTCTTTTTGTCCTTGCGCAACTGCTCACCATTCCCGTCATGTGGC
TCTTGCCTCGCGCCTACTTCATAGCCGTTTTTACCTTCTGGCGTCTTGCG
TACAACGTCGGTATCGGCGCTTTGCTTCACGTTCAATCCAAACACGCCTC
CATAACTAAATGGCTTCACGCGCTTTCCCCCTCGGCCCGCGCCCTCGTGC
ATTGGGCTAGTACCAAATCCATGCGCAACGACTACGCCTGGGACAAACTC
CCGTCGTGCTACAATGCCTGGATCACCTTTCGCGCTCTCTCCATGCTTAT
TCTTACCAACGATGGCTTTTCGTACTTTGTGTTGGCCGTGAAGTGTTTCA
ACCCGTTTCAAACGTCCGCGTTTTGGAAGCTGCTCATCTGCATTCCGTCA
GGTATTGCCTTGATCGCTCTGTCTCTGTGGGCAAAGGGCGCTGCTCACAA
CGTCTTGGGTGATTTTGCCTGGTACTGGGGTGATTTCTTCTTTTTGGTCG
ACGCCGACCTCAGCTTTGACGGCGTTTTTGAGCTGTTTCCTCATCCTATG
TACACCGTGGGGTACGCTGCGTATTACGGGGCTGCGCTTATATGCCGCTC
TCATGCGCTGCTTGCGATATCTTTGCTTGCTCATATTTCGCAGCTCCTAT
TCCTTGCCCTTGTGGAGGAGCCACACATACAAAAGGTTTACGGTTCGAGT
ACGTCCGGTTCTGCGGATCCGCAGCCTACTACCGAAGATGAGGCGACCAC
TCCGCATAGCCCTCCAAGGTCTCCACCTTCTCTGTGTGACGAGTTTTTGC
ACGCCGCGCCGCGTTTTCCGGTCATTGTTTCCCTCGCCGTAGCGTTTAGC
GCCGTGGCTGCCCTAGCAATCTCTTCGCCCCCCAATAGTTCCAAAGCTGT
ATTCCTACTTCTTTCTTGGTTGGTCGCTCATTGGGCGCTTCTGTTTTATG
CGCTTCACACACCCGAAGGCGATAAGACCAATAACTGGATGAAGCTTTTC
ACGTCGAGGGGGTATTCGACGTTCCACGCGTTCTCTGCCTGGCAGCTTAC
TTACCTCGCCTCGTTCATAGCCAAACACACTCTATTTATTATCGCTGCCT
CAACGTTTGGGCCTTCCAAAGCACCGGACACTGTTTCAATGTCGGAAACA
GTGTCCGGTGTGCTGACCGGGGTTTCATTGACGGCGATCGCCGTAGTGAG
CCTGGCGTCCACCTGGAATGATATCGGGTACTTTGGCTTCTTTTATGGAG
ATTTCTTTGTGTTTACACACGAACAGAAGCTGAAAACCTCCGGGATGTTC
CGATACGTCACCCATCCCGAGGCCACTCTGGGGTATCTAGCATACTACGG
AATCGCTTTTATCAAGCAATCCCGCGCATTGTTCTTTCTCACGATTATTT
GCCAAGCGATCCATGTGCTGTTTGTGATTATCTGTGAATCGAAGCACATT
GACGCAACGTATATGGTTTCGAGAAATTTGACCCCCTTGGAGAGGGCGAT
GGCGACTCTTCCGGTTGTTGGTACCGGTTGCAATATGATCCGTAACGGTT
TTGACCACATGTCGCACTACGTTGATACCGTTGGCAAAACACAAGCCAAA
CAAACGGTTCGGCATCTTAGTGTTCGCAAGGAGCGACTGAAGGCCGACCT
GAACAAATCAATTGCAATCGCTCGTGATAAGCACATGAAGCCCAGGACGG
ACGAATTGTGCTCACGAGCAAAGTCAGTCGTAGGGGATATTGACTGTGCC
AGCATCGTTTCCATGTTGGGAAACCGTGGGATTCGTGTTGAGGCCGTATC
CCAGTCTCAAGTTAGGTAG
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