Gvermi12905.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12905.t1
Unique NameGvermi12905.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length95
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2000734..2001331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12905Gvermi12905Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2000734..2001331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12905.t1Gvermi12905.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2000734..2001331 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12905.t1.start1Gvermi12905.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2000734..2000736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12905.t1.CDS1Gvermi12905.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2000734..2000787 +
Gvermi12905.t1.CDS2Gvermi12905.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2000910..2000963 +
Gvermi12905.t1.CDS3Gvermi12905.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2001067..2001184 +
Gvermi12905.t1.CDS4Gvermi12905.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2001273..2001331 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12905.t1.exon1Gvermi12905.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2000734..2000787 +
Gvermi12905.t1.exon2Gvermi12905.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2000910..2000963 +
Gvermi12905.t1.exon3Gvermi12905.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2001067..2001184 +
Gvermi12905.t1.exon4Gvermi12905.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2001273..2001331 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12905.t1.intron1Gvermi12905.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2000788..2000909 +
Gvermi12905.t1.intron2Gvermi12905.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2000964..2001066 +
Gvermi12905.t1.intron3Gvermi12905.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2001185..2001272 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12905.t1.stop1Gvermi12905.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2001329..2001331 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12905.t1 ID=Gvermi12905.t1|Name=Gvermi12905.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=95bp
MVAAASTSLTAKAGSLRHFARLGAVIFGIASGAIAVSNQVSAREAAYIAK
IAEKEAEIAELKSANQTLEMEKAGMAEKPTSGDPVQDWIDSLAE*
back to top

spliced messenger RNA

>Gvermi12905.t1 ID=Gvermi12905.t1|Name=Gvermi12905.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=285bp|location=Sequence derived from alignment at ScGOVlb_425:2000734..2001331+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCTGCCGCCTCGACCTCCCTCACTGCCAAGGCCGGCAGCCTGAG
ACATTTTGCGCGCCTTGGTGCCGTCATATTTGGGATCGCGAGCGGTGCCA
TCGCAGTGTCGAACCAGGTCAGCGCGCGCGAAGCGGCGTACATCGCCAAA
ATAGCCGAGAAAGAAGCGGAAATCGCTGAGCTTAAGTCAGCCAATCAGAC
ATTGGAAATGGAAAAGGCCGGGATGGCTGAAAAACCGACTTCTGGGGACC
CCGTCCAGGACTGGATTGATTCTTTAGCAGAATAA
back to top

protein sequence of Gvermi12905.t1

>Gvermi12905.t1 ID=Gvermi12905.t1|Name=Gvermi12905.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=95bp
MVAAASTSLTAKAGSLRHFARLGAVIFGIASGAIAVSNQVSAREAAYIAK
IAEKEAEIAELKSANQTLEMEKAGMAEKPTSGDPVQDWIDSLAE*
back to top

mRNA from alignment at ScGOVlb_425:2000734..2001331+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12905.t1 ID=Gvermi12905.t1|Name=Gvermi12905.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=598bp|location=Sequence derived from alignment at ScGOVlb_425:2000734..2001331+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGCTGCCGCCTCGACCTCCCTCACTGCCAAGGCCGGCAGCCTGAG
ACATGTGAGTTTTTGATCATCATGATCTGTAAATCATCGGTGCATATCGG
ATCCATGTTCGCGGTAACTCGGCAAGCTGACAAATTGTGACTCTTGAATT
GGGTTTTTAACGATGGTCTGCCACAGTTTGCGCGCCTTGGTGCCGTCATA
TTTGGGATCGCGAGCGGTGCCATCGCAGTGGTGAGTTTGTCGAATACCGT
CACAGAGCTTGTTGACTGGTTGGTCAACTGTCTTCTGAGCTCCTAATTGA
AAACGGCTTCTAACCGTGCACCGTTGTCACCAGTCGAACCAGGTCAGCGC
GCGCGAAGCGGCGTACATCGCCAAAATAGCCGAGAAAGAAGCGGAAATCG
CTGAGCTTAAGTCAGCCAATCAGACATTGGAAATGGAAAAGGCCGGGATG
GGTAAGTGAACAAGCCTTTCGCTTTCCTTGGCGCTCAATAGCGTCAGCAT
TTTCGTCTTGACCGGAATCTAACCATGCGTTTGATGCAGCTGAAAAACCG
ACTTCTGGGGACCCCGTCCAGGACTGGATTGATTCTTTAGCAGAATAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:2000734..2001331+

>Gvermi12905.t1 ID=Gvermi12905.t1|Name=Gvermi12905.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=285bp|location=Sequence derived from alignment at ScGOVlb_425:2000734..2001331+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGCTGCCGCCTCGACCTCCCTCACTGCCAAGGCCGGCAGCCTGAG
ACATTTTGCGCGCCTTGGTGCCGTCATATTTGGGATCGCGAGCGGTGCCA
TCGCAGTGTCGAACCAGGTCAGCGCGCGCGAAGCGGCGTACATCGCCAAA
ATAGCCGAGAAAGAAGCGGAAATCGCTGAGCTTAAGTCAGCCAATCAGAC
ATTGGAAATGGAAAAGGCCGGGATGGCTGAAAAACCGACTTCTGGGGACC
CCGTCCAGGACTGGATTGATTCTTTAGCAGAATAA
back to top