Gvermi12904.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12904.t1
Unique NameGvermi12904.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1999388..2000152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1087481.AGFX01000037_gene4365
Preferred nameM1-742
PFAMsHis_Phos_1
Max annot lvl91061|Bacilli
Evalue6.86e-70
EggNOG OGsCOG0406@1|root,COG0406@2|Bacteria,1U7UE@1239|Firmicutes,4I7R7@91061|Bacilli,26X7Z@186822|Paenibacillaceae
DescriptionPhosphoglycerate mutase family
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12904Gvermi12904Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1999388..2000152 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12904.t1.stop1Gvermi12904.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1999388..1999390 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12904.t1.CDS1Gvermi12904.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1999388..2000152 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12904.t1.exon1Gvermi12904.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1999388..2000152 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12904.t1.start1Gvermi12904.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2000150..2000152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12904.t1Gvermi12904.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1999388..2000152 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12904.t1 ID=Gvermi12904.t1|Name=Gvermi12904.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=255bp
MRILIIRHADPEYVNDSITPQGRKEALALAERLASGLEGRITHLYTSPKG
RARATAAPTEEALSMTASVEQWTRELSYWPRLRGGDRPGEGGLAMWDISA
TQVRASEDLGSNSQWEAVGELKSIKANFETLQTESDAFIARHGYVREGHH
YRIVKPNRDIIAVFCHGGFGLTWLAHLLGLPLAMTWTSFYLPPSSVTTIL
FDERSPDFAYPRAIGVGDIGHLYSNSLSLAISKYERPNVYGRWKRPSGIK
ANFW*
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spliced messenger RNA

>Gvermi12904.t1 ID=Gvermi12904.t1|Name=Gvermi12904.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=765bp|location=Sequence derived from alignment at ScGOVlb_425:1999388..2000152- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTATTCTCATCATCCGACATGCCGACCCTGAATATGTCAACGACTC
AATCACACCCCAAGGAAGGAAAGAAGCACTAGCTCTGGCGGAACGTCTTG
CCAGCGGTCTGGAAGGGAGAATCACACACTTGTACACAAGTCCAAAGGGG
CGGGCGAGGGCCACTGCTGCTCCGACAGAGGAGGCGCTTTCCATGACCGC
CTCGGTGGAGCAATGGACTAGAGAGCTATCGTACTGGCCGCGACTTCGAG
GAGGAGACCGCCCGGGTGAGGGCGGGCTCGCAATGTGGGATATCTCCGCC
ACTCAGGTCCGAGCATCGGAAGATTTAGGATCGAACTCCCAATGGGAAGC
AGTCGGCGAACTCAAGTCCATCAAAGCCAACTTTGAGACCTTGCAGACCG
AGAGTGATGCATTTATCGCCCGTCATGGGTATGTCAGAGAGGGCCATCAC
TATCGTATCGTTAAACCGAACCGTGATATCATTGCCGTGTTCTGCCATGG
TGGGTTTGGTCTAACTTGGCTTGCACACTTGCTTGGACTTCCTCTCGCCA
TGACCTGGACTTCGTTTTATCTTCCACCCAGCTCGGTGACAACCATTCTA
TTTGACGAGCGCAGCCCTGATTTTGCGTATCCTCGGGCCATTGGAGTCGG
AGATATAGGTCATCTGTATTCAAATAGCTTGAGCTTAGCAATAAGCAAAT
ATGAGCGCCCTAATGTTTATGGAAGATGGAAGCGGCCCAGTGGCATTAAA
GCAAACTTTTGGTAG
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protein sequence of Gvermi12904.t1

>Gvermi12904.t1 ID=Gvermi12904.t1|Name=Gvermi12904.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=255bp
MRILIIRHADPEYVNDSITPQGRKEALALAERLASGLEGRITHLYTSPKG
RARATAAPTEEALSMTASVEQWTRELSYWPRLRGGDRPGEGGLAMWDISA
TQVRASEDLGSNSQWEAVGELKSIKANFETLQTESDAFIARHGYVREGHH
YRIVKPNRDIIAVFCHGGFGLTWLAHLLGLPLAMTWTSFYLPPSSVTTIL
FDERSPDFAYPRAIGVGDIGHLYSNSLSLAISKYERPNVYGRWKRPSGIK
ANFW*
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mRNA from alignment at ScGOVlb_425:1999388..2000152-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12904.t1 ID=Gvermi12904.t1|Name=Gvermi12904.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=765bp|location=Sequence derived from alignment at ScGOVlb_425:1999388..2000152- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTATTCTCATCATCCGACATGCCGACCCTGAATATGTCAACGACTC
AATCACACCCCAAGGAAGGAAAGAAGCACTAGCTCTGGCGGAACGTCTTG
CCAGCGGTCTGGAAGGGAGAATCACACACTTGTACACAAGTCCAAAGGGG
CGGGCGAGGGCCACTGCTGCTCCGACAGAGGAGGCGCTTTCCATGACCGC
CTCGGTGGAGCAATGGACTAGAGAGCTATCGTACTGGCCGCGACTTCGAG
GAGGAGACCGCCCGGGTGAGGGCGGGCTCGCAATGTGGGATATCTCCGCC
ACTCAGGTCCGAGCATCGGAAGATTTAGGATCGAACTCCCAATGGGAAGC
AGTCGGCGAACTCAAGTCCATCAAAGCCAACTTTGAGACCTTGCAGACCG
AGAGTGATGCATTTATCGCCCGTCATGGGTATGTCAGAGAGGGCCATCAC
TATCGTATCGTTAAACCGAACCGTGATATCATTGCCGTGTTCTGCCATGG
TGGGTTTGGTCTAACTTGGCTTGCACACTTGCTTGGACTTCCTCTCGCCA
TGACCTGGACTTCGTTTTATCTTCCACCCAGCTCGGTGACAACCATTCTA
TTTGACGAGCGCAGCCCTGATTTTGCGTATCCTCGGGCCATTGGAGTCGG
AGATATAGGTCATCTGTATTCAAATAGCTTGAGCTTAGCAATAAGCAAAT
ATGAGCGCCCTAATGTTTATGGAAGATGGAAGCGGCCCAGTGGCATTAAA
GCAAACTTTTGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1999388..2000152-

>Gvermi12904.t1 ID=Gvermi12904.t1|Name=Gvermi12904.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=765bp|location=Sequence derived from alignment at ScGOVlb_425:1999388..2000152- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTATTCTCATCATCCGACATGCCGACCCTGAATATGTCAACGACTC
AATCACACCCCAAGGAAGGAAAGAAGCACTAGCTCTGGCGGAACGTCTTG
CCAGCGGTCTGGAAGGGAGAATCACACACTTGTACACAAGTCCAAAGGGG
CGGGCGAGGGCCACTGCTGCTCCGACAGAGGAGGCGCTTTCCATGACCGC
CTCGGTGGAGCAATGGACTAGAGAGCTATCGTACTGGCCGCGACTTCGAG
GAGGAGACCGCCCGGGTGAGGGCGGGCTCGCAATGTGGGATATCTCCGCC
ACTCAGGTCCGAGCATCGGAAGATTTAGGATCGAACTCCCAATGGGAAGC
AGTCGGCGAACTCAAGTCCATCAAAGCCAACTTTGAGACCTTGCAGACCG
AGAGTGATGCATTTATCGCCCGTCATGGGTATGTCAGAGAGGGCCATCAC
TATCGTATCGTTAAACCGAACCGTGATATCATTGCCGTGTTCTGCCATGG
TGGGTTTGGTCTAACTTGGCTTGCACACTTGCTTGGACTTCCTCTCGCCA
TGACCTGGACTTCGTTTTATCTTCCACCCAGCTCGGTGACAACCATTCTA
TTTGACGAGCGCAGCCCTGATTTTGCGTATCCTCGGGCCATTGGAGTCGG
AGATATAGGTCATCTGTATTCAAATAGCTTGAGCTTAGCAATAAGCAAAT
ATGAGCGCCCTAATGTTTATGGAAGATGGAAGCGGCCCAGTGGCATTAAA
GCAAACTTTTGGTAG
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