Gvermi12901.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12901.t1
Unique NameGvermi12901.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length421
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1994328..1995590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12901Gvermi12901Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1994328..1995590 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12901.t1.stop1Gvermi12901.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1994328..1994330 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12901.t1.CDS1Gvermi12901.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1994328..1995590 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12901.t1.exon1Gvermi12901.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1994328..1995590 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12901.t1.start1Gvermi12901.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1995588..1995590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12901.t1Gvermi12901.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1994328..1995590 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12901.t1 ID=Gvermi12901.t1|Name=Gvermi12901.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=421bp
MGFFRRGKQRHVTNEPLPEWDDTRWRSHLRASALGVDYHCNLYVEIINNE
RKEAATFFKDNDEARATSHAQASFRNKRIITALGALAPITNALHQRAEPL
AGYTSIVAIPETARSHIITIIYAASRLKMSYLTDMVEFLREQFGSYHIDQ
IQQGLGDLFKNVNPTVRNSLSTMIPSRDDTNAELASAVKEYYGISVNPAP
VQSVTQSAPSVLNRVPEAPFSAPIHGSVPHPPPIGTMKEVLRKSQPTPVS
AHSSDIGPMSPELHNSQAGPRHENNLKTPSPPRPERSRMFASHTEVSPQK
REHIPQTNQPAETPFASDTEGSGLPTDRSLFADDEGLSKNTEQREMLTSQ
QGKFSETGESSPQDTAAEDISSQRPGSLSHEDVKEDRELPQHLRDFKDSD
EMLFRRYEQLKEVWGFIVVH*
back to top

spliced messenger RNA

>Gvermi12901.t1 ID=Gvermi12901.t1|Name=Gvermi12901.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at ScGOVlb_425:1994328..1995590- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTTCTTTCGTCGTGGTAAGCAGCGCCATGTTACGAACGAACCTCT
CCCTGAGTGGGATGACACGCGCTGGCGTTCACATCTTCGTGCAAGCGCCC
TTGGCGTTGATTACCACTGTAATCTCTACGTGGAGATTATCAACAACGAA
AGGAAGGAAGCCGCTACTTTCTTTAAGGACAACGATGAAGCACGAGCAAC
AAGTCATGCGCAGGCTTCATTTCGAAACAAGCGCATAATCACCGCCCTTG
GTGCACTAGCACCGATTACGAACGCGCTTCATCAGAGAGCGGAGCCGCTG
GCCGGCTACACCTCTATTGTCGCAATCCCAGAAACCGCGCGTTCCCATAT
TATAACCATAATCTACGCCGCCAGCCGCCTAAAAATGTCTTATCTCACAG
ACATGGTTGAGTTCCTGCGTGAGCAATTCGGATCCTATCACATTGACCAA
ATTCAGCAGGGCCTCGGCGACCTGTTTAAGAATGTCAATCCAACCGTTCG
CAATTCACTCTCGACGATGATTCCTTCCCGTGACGACACAAACGCGGAGC
TAGCCTCAGCAGTGAAGGAATACTATGGCATCTCAGTAAATCCCGCCCCG
GTTCAGTCCGTTACGCAAAGTGCACCGTCGGTTCTGAATCGCGTGCCCGA
AGCGCCTTTTTCGGCACCCATTCATGGCAGTGTGCCGCATCCACCGCCGA
TCGGAACGATGAAAGAGGTACTGCGTAAGTCTCAGCCCACTCCGGTATCA
GCTCATTCCTCTGATATTGGTCCCATGTCGCCCGAACTCCATAATTCGCA
GGCTGGGCCGCGACATGAGAACAATCTCAAGACTCCGTCCCCTCCACGCC
CAGAACGGAGCAGGATGTTTGCAAGTCACACAGAAGTATCTCCACAGAAG
CGGGAGCATATACCCCAAACCAACCAACCAGCGGAAACCCCATTTGCTTC
CGATACTGAAGGTTCGGGATTGCCGACGGATCGCTCTTTGTTCGCAGACG
ACGAAGGATTGTCCAAAAACACTGAGCAGCGCGAAATGCTCACGTCACAA
CAAGGCAAATTCTCAGAAACAGGCGAGAGCTCTCCACAGGACACAGCGGC
AGAAGACATTTCGTCCCAAAGGCCTGGATCGTTGTCCCATGAGGATGTAA
AAGAAGATCGTGAGCTGCCGCAGCATCTGCGGGATTTCAAAGATTCGGAC
GAGATGCTGTTTAGAAGATACGAACAACTGAAGGAAGTGTGGGGATTCAT
TGTCGTCCACTAG
back to top

protein sequence of Gvermi12901.t1

>Gvermi12901.t1 ID=Gvermi12901.t1|Name=Gvermi12901.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=421bp
MGFFRRGKQRHVTNEPLPEWDDTRWRSHLRASALGVDYHCNLYVEIINNE
RKEAATFFKDNDEARATSHAQASFRNKRIITALGALAPITNALHQRAEPL
AGYTSIVAIPETARSHIITIIYAASRLKMSYLTDMVEFLREQFGSYHIDQ
IQQGLGDLFKNVNPTVRNSLSTMIPSRDDTNAELASAVKEYYGISVNPAP
VQSVTQSAPSVLNRVPEAPFSAPIHGSVPHPPPIGTMKEVLRKSQPTPVS
AHSSDIGPMSPELHNSQAGPRHENNLKTPSPPRPERSRMFASHTEVSPQK
REHIPQTNQPAETPFASDTEGSGLPTDRSLFADDEGLSKNTEQREMLTSQ
QGKFSETGESSPQDTAAEDISSQRPGSLSHEDVKEDRELPQHLRDFKDSD
EMLFRRYEQLKEVWGFIVVH*
back to top

mRNA from alignment at ScGOVlb_425:1994328..1995590-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12901.t1 ID=Gvermi12901.t1|Name=Gvermi12901.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at ScGOVlb_425:1994328..1995590- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTTTCTTTCGTCGTGGTAAGCAGCGCCATGTTACGAACGAACCTCT
CCCTGAGTGGGATGACACGCGCTGGCGTTCACATCTTCGTGCAAGCGCCC
TTGGCGTTGATTACCACTGTAATCTCTACGTGGAGATTATCAACAACGAA
AGGAAGGAAGCCGCTACTTTCTTTAAGGACAACGATGAAGCACGAGCAAC
AAGTCATGCGCAGGCTTCATTTCGAAACAAGCGCATAATCACCGCCCTTG
GTGCACTAGCACCGATTACGAACGCGCTTCATCAGAGAGCGGAGCCGCTG
GCCGGCTACACCTCTATTGTCGCAATCCCAGAAACCGCGCGTTCCCATAT
TATAACCATAATCTACGCCGCCAGCCGCCTAAAAATGTCTTATCTCACAG
ACATGGTTGAGTTCCTGCGTGAGCAATTCGGATCCTATCACATTGACCAA
ATTCAGCAGGGCCTCGGCGACCTGTTTAAGAATGTCAATCCAACCGTTCG
CAATTCACTCTCGACGATGATTCCTTCCCGTGACGACACAAACGCGGAGC
TAGCCTCAGCAGTGAAGGAATACTATGGCATCTCAGTAAATCCCGCCCCG
GTTCAGTCCGTTACGCAAAGTGCACCGTCGGTTCTGAATCGCGTGCCCGA
AGCGCCTTTTTCGGCACCCATTCATGGCAGTGTGCCGCATCCACCGCCGA
TCGGAACGATGAAAGAGGTACTGCGTAAGTCTCAGCCCACTCCGGTATCA
GCTCATTCCTCTGATATTGGTCCCATGTCGCCCGAACTCCATAATTCGCA
GGCTGGGCCGCGACATGAGAACAATCTCAAGACTCCGTCCCCTCCACGCC
CAGAACGGAGCAGGATGTTTGCAAGTCACACAGAAGTATCTCCACAGAAG
CGGGAGCATATACCCCAAACCAACCAACCAGCGGAAACCCCATTTGCTTC
CGATACTGAAGGTTCGGGATTGCCGACGGATCGCTCTTTGTTCGCAGACG
ACGAAGGATTGTCCAAAAACACTGAGCAGCGCGAAATGCTCACGTCACAA
CAAGGCAAATTCTCAGAAACAGGCGAGAGCTCTCCACAGGACACAGCGGC
AGAAGACATTTCGTCCCAAAGGCCTGGATCGTTGTCCCATGAGGATGTAA
AAGAAGATCGTGAGCTGCCGCAGCATCTGCGGGATTTCAAAGATTCGGAC
GAGATGCTGTTTAGAAGATACGAACAACTGAAGGAAGTGTGGGGATTCAT
TGTCGTCCACTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1994328..1995590-

>Gvermi12901.t1 ID=Gvermi12901.t1|Name=Gvermi12901.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1263bp|location=Sequence derived from alignment at ScGOVlb_425:1994328..1995590- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTTTCTTTCGTCGTGGTAAGCAGCGCCATGTTACGAACGAACCTCT
CCCTGAGTGGGATGACACGCGCTGGCGTTCACATCTTCGTGCAAGCGCCC
TTGGCGTTGATTACCACTGTAATCTCTACGTGGAGATTATCAACAACGAA
AGGAAGGAAGCCGCTACTTTCTTTAAGGACAACGATGAAGCACGAGCAAC
AAGTCATGCGCAGGCTTCATTTCGAAACAAGCGCATAATCACCGCCCTTG
GTGCACTAGCACCGATTACGAACGCGCTTCATCAGAGAGCGGAGCCGCTG
GCCGGCTACACCTCTATTGTCGCAATCCCAGAAACCGCGCGTTCCCATAT
TATAACCATAATCTACGCCGCCAGCCGCCTAAAAATGTCTTATCTCACAG
ACATGGTTGAGTTCCTGCGTGAGCAATTCGGATCCTATCACATTGACCAA
ATTCAGCAGGGCCTCGGCGACCTGTTTAAGAATGTCAATCCAACCGTTCG
CAATTCACTCTCGACGATGATTCCTTCCCGTGACGACACAAACGCGGAGC
TAGCCTCAGCAGTGAAGGAATACTATGGCATCTCAGTAAATCCCGCCCCG
GTTCAGTCCGTTACGCAAAGTGCACCGTCGGTTCTGAATCGCGTGCCCGA
AGCGCCTTTTTCGGCACCCATTCATGGCAGTGTGCCGCATCCACCGCCGA
TCGGAACGATGAAAGAGGTACTGCGTAAGTCTCAGCCCACTCCGGTATCA
GCTCATTCCTCTGATATTGGTCCCATGTCGCCCGAACTCCATAATTCGCA
GGCTGGGCCGCGACATGAGAACAATCTCAAGACTCCGTCCCCTCCACGCC
CAGAACGGAGCAGGATGTTTGCAAGTCACACAGAAGTATCTCCACAGAAG
CGGGAGCATATACCCCAAACCAACCAACCAGCGGAAACCCCATTTGCTTC
CGATACTGAAGGTTCGGGATTGCCGACGGATCGCTCTTTGTTCGCAGACG
ACGAAGGATTGTCCAAAAACACTGAGCAGCGCGAAATGCTCACGTCACAA
CAAGGCAAATTCTCAGAAACAGGCGAGAGCTCTCCACAGGACACAGCGGC
AGAAGACATTTCGTCCCAAAGGCCTGGATCGTTGTCCCATGAGGATGTAA
AAGAAGATCGTGAGCTGCCGCAGCATCTGCGGGATTTCAAAGATTCGGAC
GAGATGCTGTTTAGAAGATACGAACAACTGAAGGAAGTGTGGGGATTCAT
TGTCGTCCACTAG
back to top