Gvermi12897.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12897.t1
Unique NameGvermi12897.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length507
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1982250..1985140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12897Gvermi12897Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1982250..1985140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12897.t1Gvermi12897.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1982250..1985140 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12897.t1.start1Gvermi12897.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1982250..1982252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12897.t1.CDS1Gvermi12897.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1982250..1982897 +
Gvermi12897.t1.CDS2Gvermi12897.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1984268..1985140 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12897.t1.exon1Gvermi12897.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1982250..1982897 +
Gvermi12897.t1.exon2Gvermi12897.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1984268..1985140 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12897.t1.intron1Gvermi12897.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1982898..1984267 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12897.t1.stop1Gvermi12897.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1985138..1985140 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12897.t1 ID=Gvermi12897.t1|Name=Gvermi12897.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp
MGEMPPETLPEEPREYRQLQFGPAAVQHMYNVTSFVDTDNVISPEWQTVT
MHNKWPGYLRLRNRFAHIRVYENAERTETFLCAIYNGYNLPSDGLGTCRM
LVEIEGLEGQTLSWRACDDPGECRGGPGTTLNGAHSFVDNLTDGWCVTPL
ERNGNSIRVTFTEATGLYGIEIQTPNSQFEYLWSDPPQHGMTGMIDSNGF
SVDGSASFTINLNGIPAPTPGKCLRTVSDGVCSVEQCSQTGMTCDCSGTN
LCTIETCSHRIAENGSLSSALEIGGIVNCVVSDNIQCVRRTGELPVENLP
TQPIEYRQLQFGSRAQLHMYNVTAFIDTDNAISADVSMHGLWPTYLRLRN
RFIHARLYENSARNETFLCSIYNGYHLPSDGLGMATASVEIESLSGQVLS
WRACDDTGECLGGPATSLSARHVYVDNLSDGWCVTPLEGNGNAIRVTFSN
VTGMYGIEIQSPGYQFEYLWSDPPQHGMAGTIDANGFSVEGSASFVINLN
GIPVPV*
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spliced messenger RNA

>Gvermi12897.t1 ID=Gvermi12897.t1|Name=Gvermi12897.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_425:1982250..1985140+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGAAATGCCGCCCGAGACTTTGCCGGAAGAACCACGTGAGTATCG
CCAACTTCAATTTGGACCTGCCGCCGTTCAACACATGTACAATGTAACTT
CATTCGTAGACACCGACAATGTCATTTCTCCGGAGTGGCAAACGGTCACT
ATGCATAATAAGTGGCCAGGTTACTTACGCCTGCGAAATCGATTTGCTCA
TATTCGAGTGTATGAAAATGCAGAAAGGACTGAAACATTCCTATGCGCCA
TATACAACGGATATAACCTGCCTTCCGACGGGCTTGGGACTTGCAGAATG
TTAGTTGAGATTGAAGGTCTTGAGGGACAGACTTTGTCGTGGAGAGCGTG
TGATGATCCTGGTGAATGCCGCGGAGGTCCTGGAACCACTTTGAATGGAG
CTCACAGTTTTGTAGACAACTTGACAGATGGATGGTGCGTCACCCCCTTG
GAGAGGAACGGGAATTCGATTCGTGTTACGTTTACCGAGGCGACGGGCCT
GTATGGTATCGAGATCCAAACTCCTAACTCCCAGTTTGAATATCTGTGGA
GCGATCCCCCGCAGCATGGCATGACAGGAATGATCGACTCTAATGGATTT
AGTGTTGACGGATCCGCATCGTTCACCATCAATTTGAATGGAATCCCGGC
TCCAACTCCTGGCAAATGTTTACGGACAGTTTCGGATGGCGTGTGCTCAG
TGGAACAATGCAGCCAGACTGGAATGACTTGTGATTGTTCGGGAACAAAC
TTGTGCACGATTGAGACTTGCTCTCACAGAATCGCGGAAAATGGAAGTCT
TTCTAGTGCTTTGGAAATTGGTGGAATTGTAAACTGCGTCGTTAGTGATA
ATATACAATGCGTAAGAAGAACTGGGGAGTTACCGGTCGAAAACTTGCCA
ACGCAACCTATTGAATACCGTCAGCTTCAATTTGGATCTCGAGCTCAATT
ACATATGTACAACGTAACAGCATTCATAGACACTGATAATGCCATTTCTG
CGGATGTCAGCATGCATGGGCTGTGGCCAACATATTTGCGTTTGCGGAAT
CGATTTATCCATGCGCGATTGTATGAAAATTCGGCAAGAAACGAGACATT
TTTGTGTTCTATTTACAATGGATATCACTTGCCGTCAGACGGCCTCGGCA
TGGCCACAGCTAGTGTTGAAATAGAGAGCCTTAGTGGTCAAGTTTTATCA
TGGAGGGCTTGTGATGATACAGGAGAATGTCTTGGAGGTCCTGCCACTTC
TCTAAGTGCAAGACATGTGTACGTGGACAATCTTTCCGATGGTTGGTGCG
TAACTCCTCTGGAAGGAAATGGAAATGCCATTCGTGTTACTTTCTCCAAT
GTAACTGGGATGTATGGAATTGAAATTCAGTCGCCTGGATACCAGTTCGA
GTACTTGTGGTCAGATCCTCCGCAACATGGCATGGCTGGCACGATCGACG
CCAATGGCTTCAGCGTTGAAGGATCTGCTTCATTTGTTATCAATCTGAAT
GGAATACCGGTGCCAGTTTAA
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protein sequence of Gvermi12897.t1

>Gvermi12897.t1 ID=Gvermi12897.t1|Name=Gvermi12897.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=507bp
MGEMPPETLPEEPREYRQLQFGPAAVQHMYNVTSFVDTDNVISPEWQTVT
MHNKWPGYLRLRNRFAHIRVYENAERTETFLCAIYNGYNLPSDGLGTCRM
LVEIEGLEGQTLSWRACDDPGECRGGPGTTLNGAHSFVDNLTDGWCVTPL
ERNGNSIRVTFTEATGLYGIEIQTPNSQFEYLWSDPPQHGMTGMIDSNGF
SVDGSASFTINLNGIPAPTPGKCLRTVSDGVCSVEQCSQTGMTCDCSGTN
LCTIETCSHRIAENGSLSSALEIGGIVNCVVSDNIQCVRRTGELPVENLP
TQPIEYRQLQFGSRAQLHMYNVTAFIDTDNAISADVSMHGLWPTYLRLRN
RFIHARLYENSARNETFLCSIYNGYHLPSDGLGMATASVEIESLSGQVLS
WRACDDTGECLGGPATSLSARHVYVDNLSDGWCVTPLEGNGNAIRVTFSN
VTGMYGIEIQSPGYQFEYLWSDPPQHGMAGTIDANGFSVEGSASFVINLN
GIPVPV*
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mRNA from alignment at ScGOVlb_425:1982250..1985140+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12897.t1 ID=Gvermi12897.t1|Name=Gvermi12897.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2891bp|location=Sequence derived from alignment at ScGOVlb_425:1982250..1985140+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGAAATGCCGCCCGAGACTTTGCCGGAAGAACCACGTGAGTATCG
CCAACTTCAATTTGGACCTGCCGCCGTTCAACACATGTACAATGTAACTT
CATTCGTAGACACCGACAATGTCATTTCTCCGGAGTGGCAAACGGTCACT
ATGCATAATAAGTGGCCAGGTTACTTACGCCTGCGAAATCGATTTGCTCA
TATTCGAGTGTATGAAAATGCAGAAAGGACTGAAACATTCCTATGCGCCA
TATACAACGGATATAACCTGCCTTCCGACGGGCTTGGGACTTGCAGAATG
TTAGTTGAGATTGAAGGTCTTGAGGGACAGACTTTGTCGTGGAGAGCGTG
TGATGATCCTGGTGAATGCCGCGGAGGTCCTGGAACCACTTTGAATGGAG
CTCACAGTTTTGTAGACAACTTGACAGATGGATGGTGCGTCACCCCCTTG
GAGAGGAACGGGAATTCGATTCGTGTTACGTTTACCGAGGCGACGGGCCT
GTATGGTATCGAGATCCAAACTCCTAACTCCCAGTTTGAATATCTGTGGA
GCGATCCCCCGCAGCATGGCATGACAGGAATGATCGACTCTAATGGATTT
AGTGTTGACGGATCCGCATCGTTCACCATCAATTTGAATGGAATCCCGGT
ACCTAACTAAGATGCAAGTGAACATTTGAATATGTAGCCAGTGTAACACT
GAACACATTATCAATAAAAGCGCAATCATGACTAACTTTGCATCTTATCC
GCTTCTTTCAGAGAATTGAGACAGAGCCCACGGTCAAATTCAATTGCATC
CCCTTCATTCTGTTGCGTACTACTCTATCAACTGCGCCAACCTCGAAGCA
GTTTTGCACGCACATTAATGATGTGATGTTCCAAGTTTCCCAATCCCACA
TATTCTGGctccttctctatttaggattctgggctttaattccagttcca
gcagagttctatattcgaagcattactctttcctccggaagttcaggacc
cgttgtggtacttctTTTTCAGGCTGTTTGACCGTTTTACGGTGGTTCTC
TTCGCTTGATAGCTTCATATACGTTTAAAAGTAAGAAGACTACATGTCTT
CGAACAATATTGAGATATCTTCCACGCCTCGGCCTTTGAGCGACGGTACA
TTTCGTCCTGATGTGGGAGTCATGCCCTGGACGACGAACGTTAAAATTGA
GCGACTTTTTTGTTTCTTGTTTTTGAAAGGATAAAACTTTAACATCAGCA
TGCAATGAAGCGTTGCAACGATCTTGAGAACACCCAAAACCAGAAGCGGA
ACTGGTTTAACCCCACATCCGATACTACAGTGTAAAAAAACGTAGTTCAA
ACACACAAGAATAAGTCACAATCTCATTTTTTGTTTCTACTGGTGTCATA
AAGGTTTTACTTTAAAAGATCCGCATTATTCTTCTTGCAGCACCGTACCT
GGAATTAACCGGTTATTTTATAAATCGATACGAGTCGATAATTCATGACC
GCGGTTTGTGTCCGTTTACTTCTTACGGGCAAGGACTTCCCTAGCTAGAC
GACCCATTAACAGCCAACAATCATTCGCGATCTTTTCTTCATGGGAAAAC
TTCAATTCGCTTCCATGGATACAAGCACAGCTGAAAGTGATATTGTAATT
GCTTCGGTGGTTAGACGTGTTTCTGGGTTACCGTTTTGTTTCATCTGAGA
ATCGTCTGACCCATTTGACTCAATTAAACCCAAGGGAACGTGCCAACCAA
TTGCAAGGAGTATATTTGACATATAAGACATATTCATAGGGAGTTCCACC
ATGGACGCACTACTCACCTATCAGATGCTTGAGGATCTCTTTTACATCAG
CCGTAATTCCATTCACATAGGCCGGTGAACTTGTATAAAGGTGAAAGCAT
GTCTCACCAAACTTTGACAGTTTCTCACATAGTGTTGTCGGCAATTCTCT
TGTTTATTGTGAGAGCTCAGAACCCAACTTCTTGTGTTTATAACGTTACG
CATTGCGCCTGTTCCCAGGCTCCAACTCCTGGCAAATGTTTACGGACAGT
TTCGGATGGCGTGTGCTCAGTGGAACAATGCAGCCAGACTGGAATGACTT
GTGATTGTTCGGGAACAAACTTGTGCACGATTGAGACTTGCTCTCACAGA
ATCGCGGAAAATGGAAGTCTTTCTAGTGCTTTGGAAATTGGTGGAATTGT
AAACTGCGTCGTTAGTGATAATATACAATGCGTAAGAAGAACTGGGGAGT
TACCGGTCGAAAACTTGCCAACGCAACCTATTGAATACCGTCAGCTTCAA
TTTGGATCTCGAGCTCAATTACATATGTACAACGTAACAGCATTCATAGA
CACTGATAATGCCATTTCTGCGGATGTCAGCATGCATGGGCTGTGGCCAA
CATATTTGCGTTTGCGGAATCGATTTATCCATGCGCGATTGTATGAAAAT
TCGGCAAGAAACGAGACATTTTTGTGTTCTATTTACAATGGATATCACTT
GCCGTCAGACGGCCTCGGCATGGCCACAGCTAGTGTTGAAATAGAGAGCC
TTAGTGGTCAAGTTTTATCATGGAGGGCTTGTGATGATACAGGAGAATGT
CTTGGAGGTCCTGCCACTTCTCTAAGTGCAAGACATGTGTACGTGGACAA
TCTTTCCGATGGTTGGTGCGTAACTCCTCTGGAAGGAAATGGAAATGCCA
TTCGTGTTACTTTCTCCAATGTAACTGGGATGTATGGAATTGAAATTCAG
TCGCCTGGATACCAGTTCGAGTACTTGTGGTCAGATCCTCCGCAACATGG
CATGGCTGGCACGATCGACGCCAATGGCTTCAGCGTTGAAGGATCTGCTT
CATTTGTTATCAATCTGAATGGAATACCGGTGCCAGTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1982250..1985140+

>Gvermi12897.t1 ID=Gvermi12897.t1|Name=Gvermi12897.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1521bp|location=Sequence derived from alignment at ScGOVlb_425:1982250..1985140+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGAAATGCCGCCCGAGACTTTGCCGGAAGAACCACGTGAGTATCG
CCAACTTCAATTTGGACCTGCCGCCGTTCAACACATGTACAATGTAACTT
CATTCGTAGACACCGACAATGTCATTTCTCCGGAGTGGCAAACGGTCACT
ATGCATAATAAGTGGCCAGGTTACTTACGCCTGCGAAATCGATTTGCTCA
TATTCGAGTGTATGAAAATGCAGAAAGGACTGAAACATTCCTATGCGCCA
TATACAACGGATATAACCTGCCTTCCGACGGGCTTGGGACTTGCAGAATG
TTAGTTGAGATTGAAGGTCTTGAGGGACAGACTTTGTCGTGGAGAGCGTG
TGATGATCCTGGTGAATGCCGCGGAGGTCCTGGAACCACTTTGAATGGAG
CTCACAGTTTTGTAGACAACTTGACAGATGGATGGTGCGTCACCCCCTTG
GAGAGGAACGGGAATTCGATTCGTGTTACGTTTACCGAGGCGACGGGCCT
GTATGGTATCGAGATCCAAACTCCTAACTCCCAGTTTGAATATCTGTGGA
GCGATCCCCCGCAGCATGGCATGACAGGAATGATCGACTCTAATGGATTT
AGTGTTGACGGATCCGCATCGTTCACCATCAATTTGAATGGAATCCCGGC
TCCAACTCCTGGCAAATGTTTACGGACAGTTTCGGATGGCGTGTGCTCAG
TGGAACAATGCAGCCAGACTGGAATGACTTGTGATTGTTCGGGAACAAAC
TTGTGCACGATTGAGACTTGCTCTCACAGAATCGCGGAAAATGGAAGTCT
TTCTAGTGCTTTGGAAATTGGTGGAATTGTAAACTGCGTCGTTAGTGATA
ATATACAATGCGTAAGAAGAACTGGGGAGTTACCGGTCGAAAACTTGCCA
ACGCAACCTATTGAATACCGTCAGCTTCAATTTGGATCTCGAGCTCAATT
ACATATGTACAACGTAACAGCATTCATAGACACTGATAATGCCATTTCTG
CGGATGTCAGCATGCATGGGCTGTGGCCAACATATTTGCGTTTGCGGAAT
CGATTTATCCATGCGCGATTGTATGAAAATTCGGCAAGAAACGAGACATT
TTTGTGTTCTATTTACAATGGATATCACTTGCCGTCAGACGGCCTCGGCA
TGGCCACAGCTAGTGTTGAAATAGAGAGCCTTAGTGGTCAAGTTTTATCA
TGGAGGGCTTGTGATGATACAGGAGAATGTCTTGGAGGTCCTGCCACTTC
TCTAAGTGCAAGACATGTGTACGTGGACAATCTTTCCGATGGTTGGTGCG
TAACTCCTCTGGAAGGAAATGGAAATGCCATTCGTGTTACTTTCTCCAAT
GTAACTGGGATGTATGGAATTGAAATTCAGTCGCCTGGATACCAGTTCGA
GTACTTGTGGTCAGATCCTCCGCAACATGGCATGGCTGGCACGATCGACG
CCAATGGCTTCAGCGTTGAAGGATCTGCTTCATTTGTTATCAATCTGAAT
GGAATACCGGTGCCAGTTTAA
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