Gvermi12895.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12895.t1
Unique NameGvermi12895.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1974085..1975089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702916.1
PFAMsPP2C
Max annot lvl2759|Eukaryota
KEGG koko:K01090,ko:K04457,ko:K14803,ko:K17499,ko:K17505
KEGG Pathwayko04010,map04010
GOsGO:0005575,GO:0016020
Evalue8.92e-21
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12895Gvermi12895Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1974085..1975089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12895.t1Gvermi12895.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1974085..1975089 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12895.t1.stop1Gvermi12895.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1974085..1974087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12895.t1.CDS1Gvermi12895.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1974085..1974363 -
Gvermi12895.t1.CDS2Gvermi12895.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1974478..1975089 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12895.t1.exon1Gvermi12895.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1974085..1974363 -
Gvermi12895.t1.exon2Gvermi12895.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1974478..1975089 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12895.t1.intron1Gvermi12895.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1974364..1974477 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12895.t1.start1Gvermi12895.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1975087..1975089 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12895.t1 ID=Gvermi12895.t1|Name=Gvermi12895.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=297bp
MFRDIVDQLFTPIPVVRSSTKSVMGTMHRADNIPNQDGSFILHSPDAQSH
PRRKSAKQHAGVQGIFAIGVFDGHGPKGHEASSIAAQRMKFALSRIAEDQ
KDISLEQTVKTAFAEITAALNSAPCGTDSGTTGSVVAVRNDDVVVANVGD
SAVYCVSRSKWTRRPRVNYVSPMHRPTNPAEAERVKLSGGQIQDGYVVDQ
QCKMGIGVSRTIGDRDMGQYGCIPDPTFHSFKLQRRDYTFVVATDGLWDV
PRLDSEAAVLSATRGLGVTPQQVCKRLQKRAKDPSDDCTVACMIVV*
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spliced messenger RNA

>Gvermi12895.t1 ID=Gvermi12895.t1|Name=Gvermi12895.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=891bp|location=Sequence derived from alignment at ScGOVlb_425:1974085..1975089- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCGCGACATTGTTGACCAGCTTTTCACACCAATTCCCGTGGTTAG
AAGTTCCACGAAGTCCGTCATGGGAACGATGCACCGCGCGGACAATATCC
CAAACCAGGATGGCTCCTTCATCCTGCATTCCCCTGATGCTCAATCCCAT
CCGCGCCGCAAGTCAGCAAAACAACATGCTGGCGTTCAAGGTATCTTCGC
CATAGGCGTGTTCGACGGCCACGGCCCGAAAGGCCACGAAGCAAGCTCTA
TAGCCGCACAACGAATGAAGTTCGCCCTCAGTCGCATTGCGGAAGACCAG
AAAGATATATCGTTGGAGCAAACGGTGAAAACGGCCTTCGCCGAGATTAC
GGCCGCGCTAAATTCGGCTCCGTGTGGTACGGACAGCGGCACCACTGGTT
CGGTGGTCGCCGTGAGGAACGACGACGTTGTGGTAGCCAATGTTGGCGAC
TCGGCCGTTTACTGCGTGTCTCGCTCCAAGTGGACCCGACGTCCGAGAGT
GAACTACGTCAGTCCGATGCACAGGCCGACGAATCCTGCCGAGGCCGAGC
GGGTTAAACTAAGCGGCGGGCAAATCCAAGACGGATACGTCGTGGACCAA
CAATGCAAAATGGGAATCGGAGTTAGCCGCACCATCGGCGATCGGGACAT
GGGTCAATATGGATGCATTCCAGACCCAACGTTCCATAGCTTCAAGTTAC
AACGAAGGGATTACACCTTTGTCGTAGCTACCGACGGATTGTGGGATGTG
CCCCGGCTAGACAGCGAAGCCGCCGTTTTGTCAGCAACCAGGGGATTGGG
TGTCACCCCCCAGCAGGTTTGCAAACGGTTGCAGAAGAGGGCTAAAGATC
CCAGCGACGATTGCACTGTGGCCTGTATGATAGTGGTATAG
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protein sequence of Gvermi12895.t1

>Gvermi12895.t1 ID=Gvermi12895.t1|Name=Gvermi12895.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=297bp
MFRDIVDQLFTPIPVVRSSTKSVMGTMHRADNIPNQDGSFILHSPDAQSH
PRRKSAKQHAGVQGIFAIGVFDGHGPKGHEASSIAAQRMKFALSRIAEDQ
KDISLEQTVKTAFAEITAALNSAPCGTDSGTTGSVVAVRNDDVVVANVGD
SAVYCVSRSKWTRRPRVNYVSPMHRPTNPAEAERVKLSGGQIQDGYVVDQ
QCKMGIGVSRTIGDRDMGQYGCIPDPTFHSFKLQRRDYTFVVATDGLWDV
PRLDSEAAVLSATRGLGVTPQQVCKRLQKRAKDPSDDCTVACMIVV*
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mRNA from alignment at ScGOVlb_425:1974085..1975089-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12895.t1 ID=Gvermi12895.t1|Name=Gvermi12895.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at ScGOVlb_425:1974085..1975089- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTCGCGACATTGTTGACCAGCTTTTCACACCAATTCCCGTGGTTAG
AAGTTCCACGAAGTCCGTCATGGGAACGATGCACCGCGCGGACAATATCC
CAAACCAGGATGGCTCCTTCATCCTGCATTCCCCTGATGCTCAATCCCAT
CCGCGCCGCAAGTCAGCAAAACAACATGCTGGCGTTCAAGGTATCTTCGC
CATAGGCGTGTTCGACGGCCACGGCCCGAAAGGCCACGAAGCAAGCTCTA
TAGCCGCACAACGAATGAAGTTCGCCCTCAGTCGCATTGCGGAAGACCAG
AAAGATATATCGTTGGAGCAAACGGTGAAAACGGCCTTCGCCGAGATTAC
GGCCGCGCTAAATTCGGCTCCGTGTGGTACGGACAGCGGCACCACTGGTT
CGGTGGTCGCCGTGAGGAACGACGACGTTGTGGTAGCCAATGTTGGCGAC
TCGGCCGTTTACTGCGTGTCTCGCTCCAAGTGGACCCGACGTCCGAGAGT
GAACTACGTCAGTCCGATGCACAGGCCGACGAATCCTGCCGAGGCCGAGC
GGGTTAAACTAAGCGGCGGGCAAATCCAAGACGGATACGTCGTGGACCAA
CAATGCAAAATGGTAAGTTTGGTTGCATGAAGCGCTCTTCCTTACATTGT
TTGCTGCGACTCGTGCGACTGTTCTCTAACTTCCATTTACACTTCTCATT
TGGATCCATTTTGTTCTCGTGTGAAGGGAATCGGAGTTAGCCGCACCATC
GGCGATCGGGACATGGGTCAATATGGATGCATTCCAGACCCAACGTTCCA
TAGCTTCAAGTTACAACGAAGGGATTACACCTTTGTCGTAGCTACCGACG
GATTGTGGGATGTGCCCCGGCTAGACAGCGAAGCCGCCGTTTTGTCAGCA
ACCAGGGGATTGGGTGTCACCCCCCAGCAGGTTTGCAAACGGTTGCAGAA
GAGGGCTAAAGATCCCAGCGACGATTGCACTGTGGCCTGTATGATAGTGG
TATAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1974085..1975089-

>Gvermi12895.t1 ID=Gvermi12895.t1|Name=Gvermi12895.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=891bp|location=Sequence derived from alignment at ScGOVlb_425:1974085..1975089- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTCGCGACATTGTTGACCAGCTTTTCACACCAATTCCCGTGGTTAG
AAGTTCCACGAAGTCCGTCATGGGAACGATGCACCGCGCGGACAATATCC
CAAACCAGGATGGCTCCTTCATCCTGCATTCCCCTGATGCTCAATCCCAT
CCGCGCCGCAAGTCAGCAAAACAACATGCTGGCGTTCAAGGTATCTTCGC
CATAGGCGTGTTCGACGGCCACGGCCCGAAAGGCCACGAAGCAAGCTCTA
TAGCCGCACAACGAATGAAGTTCGCCCTCAGTCGCATTGCGGAAGACCAG
AAAGATATATCGTTGGAGCAAACGGTGAAAACGGCCTTCGCCGAGATTAC
GGCCGCGCTAAATTCGGCTCCGTGTGGTACGGACAGCGGCACCACTGGTT
CGGTGGTCGCCGTGAGGAACGACGACGTTGTGGTAGCCAATGTTGGCGAC
TCGGCCGTTTACTGCGTGTCTCGCTCCAAGTGGACCCGACGTCCGAGAGT
GAACTACGTCAGTCCGATGCACAGGCCGACGAATCCTGCCGAGGCCGAGC
GGGTTAAACTAAGCGGCGGGCAAATCCAAGACGGATACGTCGTGGACCAA
CAATGCAAAATGGGAATCGGAGTTAGCCGCACCATCGGCGATCGGGACAT
GGGTCAATATGGATGCATTCCAGACCCAACGTTCCATAGCTTCAAGTTAC
AACGAAGGGATTACACCTTTGTCGTAGCTACCGACGGATTGTGGGATGTG
CCCCGGCTAGACAGCGAAGCCGCCGTTTTGTCAGCAACCAGGGGATTGGG
TGTCACCCCCCAGCAGGTTTGCAAACGGTTGCAGAAGAGGGCTAAAGATC
CCAGCGACGATTGCACTGTGGCCTGTATGATAGTGGTATAG
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