Gvermi12893.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12893.t1
Unique NameGvermi12893.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length110
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1971555..1971976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR213CT
Preferred nameTIMM9
PFAMszf-Tim10_DDP
Max annot lvl2759|Eukaryota
KEGG koko:K17777,ko:K17779
KEGG TC3.A.8.1
GOsGO:0000003,GO:0001666,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007155,GO:0007160,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008565,GO:0009628,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022610,GO:0022804,GO:0022857,GO:0022884,GO:0031090,GO:0031224,GO:0031589,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0036293,GO:0036294,GO:0040008,GO:0040014,GO:0042221,GO:0042719,GO:0042721,GO:0042802,GO:0042803,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048638,GO:0050789,GO:0050793,GO:0050877,GO:0050896,GO:0050954,GO:0051082,GO:0051087,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070482,GO:0070585,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
Evalue1.37e-17
EggNOG OGsKOG3479@1|root,KOG3479@2759|Eukaryota
Descriptionchaperone-mediated protein transport
COG categoryO
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12893Gvermi12893Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1971555..1971976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12893.t1Gvermi12893.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1971555..1971976 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12893.t1.stop1Gvermi12893.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1971555..1971557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12893.t1.CDS1Gvermi12893.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1971555..1971677 -
Gvermi12893.t1.CDS2Gvermi12893.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1971770..1971976 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12893.t1.exon1Gvermi12893.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1971555..1971677 -
Gvermi12893.t1.exon2Gvermi12893.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1971770..1971976 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12893.t1.intron1Gvermi12893.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1971678..1971769 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12893.t1.start1Gvermi12893.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1971974..1971976 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12893.t1 ID=Gvermi12893.t1|Name=Gvermi12893.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=110bp
MAGLGGMGGFGGLGGMNSQAQQQQEQMRFMEMMQEMQVADSLRMYNDLVQ
KCFGHCVENFRSRKLDGKEEACIVRCCQKFLKFTQRATQRFQEHQQEMAE
EAAKAQQGK*
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spliced messenger RNA

>Gvermi12893.t1 ID=Gvermi12893.t1|Name=Gvermi12893.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=330bp|location=Sequence derived from alignment at ScGOVlb_425:1971555..1971976- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGACTTGGTGGCATGGGGGGCTTTGGGGGGCTTGGGGGCATGAA
TTCCCAAGCGCAGCAACAACAGGAACAAATGCGCTTCATGGAGATGATGC
AGGAAATGCAAGTTGCTGACTCATTACGAATGTACAATGATTTGGTTCAA
AAATGCTTTGGTCACTGTGTGGAAAACTTTCGATCAAGAAAGCTTGACGG
TAAAGAGGAAGCTTGTATCGTTCGGTGCTGTCAAAAGTTTTTGAAGTTTA
CGCAACGAGCAACACAACGCTTTCAAGAACATCAACAAGAGATGGCGGAA
GAGGCTGCAAAAGCACAACAGGGCAAGTGA
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protein sequence of Gvermi12893.t1

>Gvermi12893.t1 ID=Gvermi12893.t1|Name=Gvermi12893.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=110bp
MAGLGGMGGFGGLGGMNSQAQQQQEQMRFMEMMQEMQVADSLRMYNDLVQ
KCFGHCVENFRSRKLDGKEEACIVRCCQKFLKFTQRATQRFQEHQQEMAE
EAAKAQQGK*
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mRNA from alignment at ScGOVlb_425:1971555..1971976-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12893.t1 ID=Gvermi12893.t1|Name=Gvermi12893.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=422bp|location=Sequence derived from alignment at ScGOVlb_425:1971555..1971976- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGGACTTGGTGGCATGGGGGGCTTTGGGGGGCTTGGGGGCATGAA
TTCCCAAGCGCAGCAACAACAGGAACAAATGCGCTTCATGGAGATGATGC
AGGAAATGCAAGTTGCTGACTCATTACGAATGTACAATGATTTGGTTCAA
AAATGCTTTGGTCACTGTGTGGAAAACTTTCGATCAAGAAAGCTTGACGG
TAAAGAGGTTGGTTTTATAACTCGATCGGTCTGCAGCGGTTTGACTGCAA
GCTGAATCTAACTGATTTTTTTTCTCCTCGATCCTGAACCCTTTCATAGG
AAGCTTGTATCGTTCGGTGCTGTCAAAAGTTTTTGAAGTTTACGCAACGA
GCAACACAACGCTTTCAAGAACATCAACAAGAGATGGCGGAAGAGGCTGC
AAAAGCACAACAGGGCAAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1971555..1971976-

>Gvermi12893.t1 ID=Gvermi12893.t1|Name=Gvermi12893.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=330bp|location=Sequence derived from alignment at ScGOVlb_425:1971555..1971976- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGGACTTGGTGGCATGGGGGGCTTTGGGGGGCTTGGGGGCATGAA
TTCCCAAGCGCAGCAACAACAGGAACAAATGCGCTTCATGGAGATGATGC
AGGAAATGCAAGTTGCTGACTCATTACGAATGTACAATGATTTGGTTCAA
AAATGCTTTGGTCACTGTGTGGAAAACTTTCGATCAAGAAAGCTTGACGG
TAAAGAGGAAGCTTGTATCGTTCGGTGCTGTCAAAAGTTTTTGAAGTTTA
CGCAACGAGCAACACAACGCTTTCAAGAACATCAACAAGAGATGGCGGAA
GAGGCTGCAAAAGCACAACAGGGCAAGTGA
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