Gvermi12888.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12888.t1
Unique NameGvermi12888.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length405
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1940177..1941586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SDV5
PFAMsB3,Mucin2_WxxW,VWD
Max annot lvl2759|Eukaryota
KEGG koko:K21125
KEGG Pathwayko04657,map04657
Evalue9.83e-23
EggNOG OGsKOG1216@1|root,KOG1216@2759|Eukaryota
Descriptionsensory perception of sound
COG categoryS
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12888Gvermi12888Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1940177..1941586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12888.t1Gvermi12888.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1940177..1941586 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12888.t1.start1Gvermi12888.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1940177..1940179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12888.t1.CDS1Gvermi12888.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1940177..1940194 +
Gvermi12888.t1.CDS2Gvermi12888.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1940390..1941586 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12888.t1.exon1Gvermi12888.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1940177..1940194 +
Gvermi12888.t1.exon2Gvermi12888.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1940390..1941586 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12888.t1.intron1Gvermi12888.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1940195..1940389 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12888.t1.stop1Gvermi12888.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1941584..1941586 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12888.t1 ID=Gvermi12888.t1|Name=Gvermi12888.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=405bp
LLTALQAIFYSLPLLRTLPFARRPSLLHTLPIPPPAMAHAAAASPSADPA
VHRQLQHQQLHPPPPAAPALAKRAPTPAFDLTALPDELISMCYAHLPATD
LVALEHVSRRLRHLIAYDAVCWRRCTQARWGHLTTNSVLLPSAARHAGTW
KHLYSEKAQCDAKNAPWLTLCHSEKLAILDLIKRHPAPHLPRPSWPAPSQ
SPEPATPPADTPSPLSFSSPISVMSAAPSSPHLDCINIVLLIDASSSVTD
DDFDAMKSFARTLVHSLRQTHPNSTVAVVQFNQHPKVEISLTPVSTPKLS
TAIDNMEQLMGSTDIAAPIRRAREILAEEASPGDRAIVLLTDGQTHADEL
CQSEKEARKAFDQVRARMFTLGVGRDVDESGLSRVAAGSQGGMNFTLRRL
GSTK*
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spliced messenger RNA

>Gvermi12888.t1 ID=Gvermi12888.t1|Name=Gvermi12888.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at ScGOVlb_425:1940177..1941586+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ctgctcaccgccctcCAAGCCATCTTCTACTCGTTGCCGCTCTTGCGCAC
GCTGCCGTTTGCCCGCCGCCCCAGCCTGCTGCACACCCTGCCCATCCCGC
CACCCGCCATGGCCCACGCCGCCGCCGCTTCGCCCTCGGCCGACCCGGCC
GTGCACCGCCAGCTGCAACACCAGCAGCTgcacccacccccgcccgccgc
ccccgccctcgccaagcgcgcccccacccccgccTTTGACCTCACCGCCC
TCCCTGACGAGCTCATCTCCATGTGCTACGCCCACCTGCCCGCCACAGAC
CTCGTCGCCCTCGAGCACGTCTCGCGCCGTCTGCGCCACCTCATCGCCTA
CGACGCTGTGTGCTGGCGCCGCTGCACTCAAGCCCGCTGGGGCCACCTCA
CCACCAATTCCGTCCTCCTCCCGTCCGCCGCCCGCCACGCCGGCACCTGG
AAGCACCTCTACTCCGAAAAGGCCCAGTGCGATGCCAAGAACGCCCCGTG
GCTTACCCTGTGCCACAGTGAGAAGCTCGCCATCCTTGACCTCATCAAGC
GCCACCCAGCCCCCCATCTGCCGCGCCCCTCGTGGCCCGCCCCTTCCCAA
TCGCCAGAGCCCGCCACCCCGCCGGCCGACACCCCCTCCCCGCTCTCCTT
TTCCTCCCCCATCAGCGTCATGTCCGCCGCCCCCTCCTCCCCCCACCTTG
ACTGCATCAACATCGTCCTGCTCATCGACGCCAGCTCCAGCGTCACCGAT
GACGACTTTGACGCCATGAAGAGTTTTGCACGCACCTTGGTCCACAGCCT
GCGTCAGACCCACCCCAATTCCACTGTCGCCGTTGTGCAGTTCAACCAGC
ACCCCAAGGTGGAGATCTCCCTCACCCCGGTCAGCACCCCCAAGCTGTCC
ACCGCCATCGACAACATGGAGCAGCTCATGGGCAGCACCGACATAGCCGC
CCCGATCCGCAGAGCGCGAGAGATTCTCGCCGAAGAGGCCAGCCCGGGCG
ACCGCGCCATCGTGCTGCTCACCGACGGCCAGACGCACGCTGACGAGCTG
TGTCAGAGCGAGAAGGAGGCCCGCAAGGCCTTCGACCAGGTGCGCGCCAG
GATGTTCACCCTGGGTGTCGGCCGTGACGTCGACGAGAGCGGGCTCAGCC
GCGTGGCCGCCGGCTCCCAGGGTGGCATGAACTTTACCCTCAGACGCCTC
GGTTCCACCAAGTAA
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protein sequence of Gvermi12888.t1

>Gvermi12888.t1 ID=Gvermi12888.t1|Name=Gvermi12888.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=405bp
LLTALQAIFYSLPLLRTLPFARRPSLLHTLPIPPPAMAHAAAASPSADPA
VHRQLQHQQLHPPPPAAPALAKRAPTPAFDLTALPDELISMCYAHLPATD
LVALEHVSRRLRHLIAYDAVCWRRCTQARWGHLTTNSVLLPSAARHAGTW
KHLYSEKAQCDAKNAPWLTLCHSEKLAILDLIKRHPAPHLPRPSWPAPSQ
SPEPATPPADTPSPLSFSSPISVMSAAPSSPHLDCINIVLLIDASSSVTD
DDFDAMKSFARTLVHSLRQTHPNSTVAVVQFNQHPKVEISLTPVSTPKLS
TAIDNMEQLMGSTDIAAPIRRAREILAEEASPGDRAIVLLTDGQTHADEL
CQSEKEARKAFDQVRARMFTLGVGRDVDESGLSRVAAGSQGGMNFTLRRL
GSTK*
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mRNA from alignment at ScGOVlb_425:1940177..1941586+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12888.t1 ID=Gvermi12888.t1|Name=Gvermi12888.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at ScGOVlb_425:1940177..1941586+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgctcaccgccctcCAAGTAAGCATTCCACACCACCGTATCTCACTGTA
TCCAACCACACGCGCCGaaaacaaaacaacaaaactcaacaaaaacaaat
aatcaaaacaaaaacaaaacaaaaaaaCCGGCCCCCCCCCCTCAACCACA
CTTGGCCCCCACGCTCACCACCGCCTTCGTCTGTCTTCTTCGCCTCCACC
TGCTACCGCACAGGCCATCTTCTACTCGTTGCCGCTCTTGCGCACGCTGC
CGTTTGCCCGCCGCCCCAGCCTGCTGCACACCCTGCCCATCCCGCCACCC
GCCATGGCCCACGCCGCCGCCGCTTCGCCCTCGGCCGACCCGGCCGTGCA
CCGCCAGCTGCAACACCAGCAGCTgcacccacccccgcccgccgcccccg
ccctcgccaagcgcgcccccacccccgccTTTGACCTCACCGCCCTCCCT
GACGAGCTCATCTCCATGTGCTACGCCCACCTGCCCGCCACAGACCTCGT
CGCCCTCGAGCACGTCTCGCGCCGTCTGCGCCACCTCATCGCCTACGACG
CTGTGTGCTGGCGCCGCTGCACTCAAGCCCGCTGGGGCCACCTCACCACC
AATTCCGTCCTCCTCCCGTCCGCCGCCCGCCACGCCGGCACCTGGAAGCA
CCTCTACTCCGAAAAGGCCCAGTGCGATGCCAAGAACGCCCCGTGGCTTA
CCCTGTGCCACAGTGAGAAGCTCGCCATCCTTGACCTCATCAAGCGCCAC
CCAGCCCCCCATCTGCCGCGCCCCTCGTGGCCCGCCCCTTCCCAATCGCC
AGAGCCCGCCACCCCGCCGGCCGACACCCCCTCCCCGCTCTCCTTTTCCT
CCCCCATCAGCGTCATGTCCGCCGCCCCCTCCTCCCCCCACCTTGACTGC
ATCAACATCGTCCTGCTCATCGACGCCAGCTCCAGCGTCACCGATGACGA
CTTTGACGCCATGAAGAGTTTTGCACGCACCTTGGTCCACAGCCTGCGTC
AGACCCACCCCAATTCCACTGTCGCCGTTGTGCAGTTCAACCAGCACCCC
AAGGTGGAGATCTCCCTCACCCCGGTCAGCACCCCCAAGCTGTCCACCGC
CATCGACAACATGGAGCAGCTCATGGGCAGCACCGACATAGCCGCCCCGA
TCCGCAGAGCGCGAGAGATTCTCGCCGAAGAGGCCAGCCCGGGCGACCGC
GCCATCGTGCTGCTCACCGACGGCCAGACGCACGCTGACGAGCTGTGTCA
GAGCGAGAAGGAGGCCCGCAAGGCCTTCGACCAGGTGCGCGCCAGGATGT
TCACCCTGGGTGTCGGCCGTGACGTCGACGAGAGCGGGCTCAGCCGCGTG
GCCGCCGGCTCCCAGGGTGGCATGAACTTTACCCTCAGACGCCTCGGTTC
CACCAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1940177..1941586+

>Gvermi12888.t1 ID=Gvermi12888.t1|Name=Gvermi12888.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1215bp|location=Sequence derived from alignment at ScGOVlb_425:1940177..1941586+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgctcaccgccctcCAAGCCATCTTCTACTCGTTGCCGCTCTTGCGCAC
GCTGCCGTTTGCCCGCCGCCCCAGCCTGCTGCACACCCTGCCCATCCCGC
CACCCGCCATGGCCCACGCCGCCGCCGCTTCGCCCTCGGCCGACCCGGCC
GTGCACCGCCAGCTGCAACACCAGCAGCTgcacccacccccgcccgccgc
ccccgccctcgccaagcgcgcccccacccccgccTTTGACCTCACCGCCC
TCCCTGACGAGCTCATCTCCATGTGCTACGCCCACCTGCCCGCCACAGAC
CTCGTCGCCCTCGAGCACGTCTCGCGCCGTCTGCGCCACCTCATCGCCTA
CGACGCTGTGTGCTGGCGCCGCTGCACTCAAGCCCGCTGGGGCCACCTCA
CCACCAATTCCGTCCTCCTCCCGTCCGCCGCCCGCCACGCCGGCACCTGG
AAGCACCTCTACTCCGAAAAGGCCCAGTGCGATGCCAAGAACGCCCCGTG
GCTTACCCTGTGCCACAGTGAGAAGCTCGCCATCCTTGACCTCATCAAGC
GCCACCCAGCCCCCCATCTGCCGCGCCCCTCGTGGCCCGCCCCTTCCCAA
TCGCCAGAGCCCGCCACCCCGCCGGCCGACACCCCCTCCCCGCTCTCCTT
TTCCTCCCCCATCAGCGTCATGTCCGCCGCCCCCTCCTCCCCCCACCTTG
ACTGCATCAACATCGTCCTGCTCATCGACGCCAGCTCCAGCGTCACCGAT
GACGACTTTGACGCCATGAAGAGTTTTGCACGCACCTTGGTCCACAGCCT
GCGTCAGACCCACCCCAATTCCACTGTCGCCGTTGTGCAGTTCAACCAGC
ACCCCAAGGTGGAGATCTCCCTCACCCCGGTCAGCACCCCCAAGCTGTCC
ACCGCCATCGACAACATGGAGCAGCTCATGGGCAGCACCGACATAGCCGC
CCCGATCCGCAGAGCGCGAGAGATTCTCGCCGAAGAGGCCAGCCCGGGCG
ACCGCGCCATCGTGCTGCTCACCGACGGCCAGACGCACGCTGACGAGCTG
TGTCAGAGCGAGAAGGAGGCCCGCAAGGCCTTCGACCAGGTGCGCGCCAG
GATGTTCACCCTGGGTGTCGGCCGTGACGTCGACGAGAGCGGGCTCAGCC
GCGTGGCCGCCGGCTCCCAGGGTGGCATGAACTTTACCCTCAGACGCCTC
GGTTCCACCAAGTAA
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