Gvermi12886.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12886.t1
Unique Name	Gvermi12886.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	590

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1933158..1934927 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LFV8
Preferred name	ATAD3A
PFAMs	AAA,DUF3523
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K17681
GOs	GO:0001558,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010941,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0040008,GO:0042119,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0060548,GO:0065007,GO:0070820,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0101003
Evalue	7.05e-158
EggNOG OGs	COG1223@1\|root,KOG0742@2759\|Eukaryota
Description	ATP binding
COG category	O
BRITE	ko00000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12886	Gvermi12886	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1933158..1934927 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12886.t1.stop1	Gvermi12886.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1933158..1933160 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12886.t1.CDS1	Gvermi12886.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1933158..1934927 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12886.t1.exon1	Gvermi12886.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1933158..1934927 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12886.t1.start1	Gvermi12886.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1934925..1934927 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12886.t1	Gvermi12886.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1933158..1934927 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1933158..1934927-
coding sequence from alignment at ScGOVlb_425:1933158..1934927-

mRNA sequence

>Gvermi12886.t1 ID=Gvermi12886.t1|Name=Gvermi12886.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=590bp
MFKNLGGGQNAGQNKASSSESFSGTIDPTGLERAAKAAREIDSSPNARMA
LELVREQEKTKQSELEAKSAELRAFESQQRAKNIEIQGDQQRKTLEKQAE
YARGQELYRDKLERERQKDVMGMQLQAQRQLKEEERKKDEESVLRQEAIR
RKTLEYETALRQQADIAKAKAEAEGRIEQERRNHDLIMQQKRLELREARK
TTIEGIKVATSSVGAGLSSFVSDRDKVATVVGGLSAAAAGIYFARAAASV
VGGYIAARLGKPSLVRDTSRITALSAVREPVATGRNVWHRFQTQDAERAL
DGVVLASATKDRLQRIARATKNARVHKAPFRNILLAGPPGTGKTLFAKGL
ARESGLEYAIFTGGDLAPLGASAVTELHKLFDWASTSRKGLLLFIDEADA
FLRTRSSASGATEEMRNALNAFLYRTGQPTTKFMLMMATNRPHEFDEAAA
DRVDDVVPFYLPGPEERRDMLTLYVDRLLKKPMVPIKMSADEPWDAFFTE
VVRDTESFSGREMEKLVIGWQAAGYGTRTATLSIAEAKQVLRDHVEQKSM
KESWAQSQREDGATVVSDYTRQTGSARTTAQNSQMYTTA*

spliced messenger RNA

>Gvermi12886.t1 ID=Gvermi12886.t1|Name=Gvermi12886.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1770bp|location=Sequence derived from alignment at ScGOVlb_425:1933158..1934927- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAGAATCTCGGCGGCGGCCAGAATGCCGGCCAGAACAAGGCGTC
GTCTTCCGAGTCCTTTTCGGGCACCATTGACCCCACCGGTCTCGAGCGCG
CTGCCAAGGCCGCCCGAGAAATCGACTCGTCCCCAAATGCGCGCATGGCC
CTGGAGCTCGTTCGCGAGCAAGAAAAGACGAAGCAGTCTGAGCTGGAGGC
CAAGTCAGCCGAGCTCCGCGCCTTCGAATCGCAGCAACGAGCAAAGAACA
TTGAGATCCAGGGCGACCAGCAGAGAAAGACGCTCGAGAAACAGGCTGAA
TATGCCAGGGGTCAGGAGCTGTACAGGGACAAGCTGGAGAGGGAGAGACA
AAAGGATGTCATGGGTATGCAACTGCAGGCGCAGCGTCAGTTGAAAGAAG
AGGAGCGAAAGAAGGACGAAGAGAGCGTTTTGCGTCAGGAAGCTATTCGC
CGCAAGACTCTCGAGTATGAAACCGCTTTACGACAACAGGCTGACATTGC
CAAGGCCAAGGCCGAAGCAGAAGGACGAATTGAACAAGAAAGGCGCAACC
ACGATCTTATTATGCAACAAAAGAGACTGGAGCTGCGGGAAGCTCGAAAG
ACTACTATCGAAGGCATTAAGGTCGCAACCAGTAGCGTTGGTGCTGGCCT
TTCCTCTTTTGTCTCCGATCGAGACAAAGTTGCCACTGTTGTCGGAGGTT
TGTCGGCCGCAGCAGCGGGCATATACTTTGCTCGAGCGGCCGCCTCGGTT
GTGGGCGGTTACATAGCCGCACGTCTCGGAAAACCCTCACTTGTCCGAGA
TACCAGTCGGATAACTGCCTTGTCTGCAGTCCGCGAACCCGTTGCCACTG
GCCGCAATGTTTGGCACCGATTCCAAACGCAAGATGCAGAGCGTGCGTTG
GACGGTGTTGTTCTTGCATCGGCGACCAAGGATCGACTGCAAAGAATTGC
GCGCGCTACGAAGAATGCACGGGTTCATAAAGCTCCGTTTAGAAATATAT
TGTTAGCGGGTCCTCCGGGAACGGGAAAGACGTTGTTTGCAAAGGGGCTA
GCAAGAGAAAGTGGGTTGGAATACGCGATCTTCACTGGAGGCGATCTGGC
GCCTCTTGGAGCGAGCGCAGTTACAGAGCTTCACAAGCTTTTCGATTGGG
CATCAACTTCCCGAAAAGGGCTGCTTTTGTTTATCGATGAGGCTGATGCC
TTTCTGAGAACCAGGAGCTCGGCCTCGGGTGCGACTGAAGAAATGCGGAA
CGCACTAAATGCCTTCTTGTACAGGACCGGACAACCGACTACCAAGTTCA
TGTTGATGATGGCGACCAACCGTCCGCATGAGTTCGATGAAGCCGCCGCA
GATCGTGTTGATGACGTCGTTCCGTTTTACTTGCCTGGTCCAGAAGAACG
GCGCGATATGCTGACTCTCTATGTAGATCGTCTTTTGAAAAAACCAATGG
TACCCATCAAAATGTCCGCTGACGAACCATGGGACGCGTTCTTTACAGAG
GTTGTTAGAGACACTGAAAGTTTCAGTGGTCGAGAAATGGAAAAGCTAGT
GATAGGATGGCAGGCTGCCGGATATGGCACGCGCACCGCCACCTTGAGTA
TTGCAGAAGCTAAACAAGTTCTACGGGATCACGTCGAACAAAAGTCAATG
AAGGAGAGTTGGGCCCAGTCCCAAAGAGAAGATGGTGCCACAGTGGTCTC
TGACTACACAAGACAAACAGGATCTGCGAGGACCACAGCGCAGAACAGTC
AAATGTACACAACAGCATGA

protein sequence of Gvermi12886.t1

>Gvermi12886.t1 ID=Gvermi12886.t1|Name=Gvermi12886.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=590bp
MFKNLGGGQNAGQNKASSSESFSGTIDPTGLERAAKAAREIDSSPNARMA
LELVREQEKTKQSELEAKSAELRAFESQQRAKNIEIQGDQQRKTLEKQAE
YARGQELYRDKLERERQKDVMGMQLQAQRQLKEEERKKDEESVLRQEAIR
RKTLEYETALRQQADIAKAKAEAEGRIEQERRNHDLIMQQKRLELREARK
TTIEGIKVATSSVGAGLSSFVSDRDKVATVVGGLSAAAAGIYFARAAASV
VGGYIAARLGKPSLVRDTSRITALSAVREPVATGRNVWHRFQTQDAERAL
DGVVLASATKDRLQRIARATKNARVHKAPFRNILLAGPPGTGKTLFAKGL
ARESGLEYAIFTGGDLAPLGASAVTELHKLFDWASTSRKGLLLFIDEADA
FLRTRSSASGATEEMRNALNAFLYRTGQPTTKFMLMMATNRPHEFDEAAA
DRVDDVVPFYLPGPEERRDMLTLYVDRLLKKPMVPIKMSADEPWDAFFTE
VVRDTESFSGREMEKLVIGWQAAGYGTRTATLSIAEAKQVLRDHVEQKSM
KESWAQSQREDGATVVSDYTRQTGSARTTAQNSQMYTTA*

mRNA from alignment at ScGOVlb_425:1933158..1934927-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12886.t1 ID=Gvermi12886.t1|Name=Gvermi12886.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1770bp|location=Sequence derived from alignment at ScGOVlb_425:1933158..1934927- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCAAGAATCTCGGCGGCGGCCAGAATGCCGGCCAGAACAAGGCGTC
GTCTTCCGAGTCCTTTTCGGGCACCATTGACCCCACCGGTCTCGAGCGCG
CTGCCAAGGCCGCCCGAGAAATCGACTCGTCCCCAAATGCGCGCATGGCC
CTGGAGCTCGTTCGCGAGCAAGAAAAGACGAAGCAGTCTGAGCTGGAGGC
CAAGTCAGCCGAGCTCCGCGCCTTCGAATCGCAGCAACGAGCAAAGAACA
TTGAGATCCAGGGCGACCAGCAGAGAAAGACGCTCGAGAAACAGGCTGAA
TATGCCAGGGGTCAGGAGCTGTACAGGGACAAGCTGGAGAGGGAGAGACA
AAAGGATGTCATGGGTATGCAACTGCAGGCGCAGCGTCAGTTGAAAGAAG
AGGAGCGAAAGAAGGACGAAGAGAGCGTTTTGCGTCAGGAAGCTATTCGC
CGCAAGACTCTCGAGTATGAAACCGCTTTACGACAACAGGCTGACATTGC
CAAGGCCAAGGCCGAAGCAGAAGGACGAATTGAACAAGAAAGGCGCAACC
ACGATCTTATTATGCAACAAAAGAGACTGGAGCTGCGGGAAGCTCGAAAG
ACTACTATCGAAGGCATTAAGGTCGCAACCAGTAGCGTTGGTGCTGGCCT
TTCCTCTTTTGTCTCCGATCGAGACAAAGTTGCCACTGTTGTCGGAGGTT
TGTCGGCCGCAGCAGCGGGCATATACTTTGCTCGAGCGGCCGCCTCGGTT
GTGGGCGGTTACATAGCCGCACGTCTCGGAAAACCCTCACTTGTCCGAGA
TACCAGTCGGATAACTGCCTTGTCTGCAGTCCGCGAACCCGTTGCCACTG
GCCGCAATGTTTGGCACCGATTCCAAACGCAAGATGCAGAGCGTGCGTTG
GACGGTGTTGTTCTTGCATCGGCGACCAAGGATCGACTGCAAAGAATTGC
GCGCGCTACGAAGAATGCACGGGTTCATAAAGCTCCGTTTAGAAATATAT
TGTTAGCGGGTCCTCCGGGAACGGGAAAGACGTTGTTTGCAAAGGGGCTA
GCAAGAGAAAGTGGGTTGGAATACGCGATCTTCACTGGAGGCGATCTGGC
GCCTCTTGGAGCGAGCGCAGTTACAGAGCTTCACAAGCTTTTCGATTGGG
CATCAACTTCCCGAAAAGGGCTGCTTTTGTTTATCGATGAGGCTGATGCC
TTTCTGAGAACCAGGAGCTCGGCCTCGGGTGCGACTGAAGAAATGCGGAA
CGCACTAAATGCCTTCTTGTACAGGACCGGACAACCGACTACCAAGTTCA
TGTTGATGATGGCGACCAACCGTCCGCATGAGTTCGATGAAGCCGCCGCA
GATCGTGTTGATGACGTCGTTCCGTTTTACTTGCCTGGTCCAGAAGAACG
GCGCGATATGCTGACTCTCTATGTAGATCGTCTTTTGAAAAAACCAATGG
TACCCATCAAAATGTCCGCTGACGAACCATGGGACGCGTTCTTTACAGAG
GTTGTTAGAGACACTGAAAGTTTCAGTGGTCGAGAAATGGAAAAGCTAGT
GATAGGATGGCAGGCTGCCGGATATGGCACGCGCACCGCCACCTTGAGTA
TTGCAGAAGCTAAACAAGTTCTACGGGATCACGTCGAACAAAAGTCAATG
AAGGAGAGTTGGGCCCAGTCCCAAAGAGAAGATGGTGCCACAGTGGTCTC
TGACTACACAAGACAAACAGGATCTGCGAGGACCACAGCGCAGAACAGTC
AAATGTACACAACAGCATGA

Coding sequence (CDS) from alignment at ScGOVlb_425:1933158..1934927-

>Gvermi12886.t1 ID=Gvermi12886.t1|Name=Gvermi12886.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1770bp|location=Sequence derived from alignment at ScGOVlb_425:1933158..1934927- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCAAGAATCTCGGCGGCGGCCAGAATGCCGGCCAGAACAAGGCGTC
GTCTTCCGAGTCCTTTTCGGGCACCATTGACCCCACCGGTCTCGAGCGCG
CTGCCAAGGCCGCCCGAGAAATCGACTCGTCCCCAAATGCGCGCATGGCC
CTGGAGCTCGTTCGCGAGCAAGAAAAGACGAAGCAGTCTGAGCTGGAGGC
CAAGTCAGCCGAGCTCCGCGCCTTCGAATCGCAGCAACGAGCAAAGAACA
TTGAGATCCAGGGCGACCAGCAGAGAAAGACGCTCGAGAAACAGGCTGAA
TATGCCAGGGGTCAGGAGCTGTACAGGGACAAGCTGGAGAGGGAGAGACA
AAAGGATGTCATGGGTATGCAACTGCAGGCGCAGCGTCAGTTGAAAGAAG
AGGAGCGAAAGAAGGACGAAGAGAGCGTTTTGCGTCAGGAAGCTATTCGC
CGCAAGACTCTCGAGTATGAAACCGCTTTACGACAACAGGCTGACATTGC
CAAGGCCAAGGCCGAAGCAGAAGGACGAATTGAACAAGAAAGGCGCAACC
ACGATCTTATTATGCAACAAAAGAGACTGGAGCTGCGGGAAGCTCGAAAG
ACTACTATCGAAGGCATTAAGGTCGCAACCAGTAGCGTTGGTGCTGGCCT
TTCCTCTTTTGTCTCCGATCGAGACAAAGTTGCCACTGTTGTCGGAGGTT
TGTCGGCCGCAGCAGCGGGCATATACTTTGCTCGAGCGGCCGCCTCGGTT
GTGGGCGGTTACATAGCCGCACGTCTCGGAAAACCCTCACTTGTCCGAGA
TACCAGTCGGATAACTGCCTTGTCTGCAGTCCGCGAACCCGTTGCCACTG
GCCGCAATGTTTGGCACCGATTCCAAACGCAAGATGCAGAGCGTGCGTTG
GACGGTGTTGTTCTTGCATCGGCGACCAAGGATCGACTGCAAAGAATTGC
GCGCGCTACGAAGAATGCACGGGTTCATAAAGCTCCGTTTAGAAATATAT
TGTTAGCGGGTCCTCCGGGAACGGGAAAGACGTTGTTTGCAAAGGGGCTA
GCAAGAGAAAGTGGGTTGGAATACGCGATCTTCACTGGAGGCGATCTGGC
GCCTCTTGGAGCGAGCGCAGTTACAGAGCTTCACAAGCTTTTCGATTGGG
CATCAACTTCCCGAAAAGGGCTGCTTTTGTTTATCGATGAGGCTGATGCC
TTTCTGAGAACCAGGAGCTCGGCCTCGGGTGCGACTGAAGAAATGCGGAA
CGCACTAAATGCCTTCTTGTACAGGACCGGACAACCGACTACCAAGTTCA
TGTTGATGATGGCGACCAACCGTCCGCATGAGTTCGATGAAGCCGCCGCA
GATCGTGTTGATGACGTCGTTCCGTTTTACTTGCCTGGTCCAGAAGAACG
GCGCGATATGCTGACTCTCTATGTAGATCGTCTTTTGAAAAAACCAATGG
TACCCATCAAAATGTCCGCTGACGAACCATGGGACGCGTTCTTTACAGAG
GTTGTTAGAGACACTGAAAGTTTCAGTGGTCGAGAAATGGAAAAGCTAGT
GATAGGATGGCAGGCTGCCGGATATGGCACGCGCACCGCCACCTTGAGTA
TTGCAGAAGCTAAACAAGTTCTACGGGATCACGTCGAACAAAAGTCAATG
AAGGAGAGTTGGGCCCAGTCCCAAAGAGAAGATGGTGCCACAGTGGTCTC
TGACTACACAAGACAAACAGGATCTGCGAGGACCACAGCGCAGAACAGTC
AAATGTACACAACAGCATGA