Gvermi12885.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12885.t1
Unique Name	Gvermi12885.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	575

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1931327..1933051 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	936053.I1BU93
Preferred name	SAS10
PFAMs	Sas10,Sas10_Utp3
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14767
GOs	GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue	1.88e-10
EggNOG OGs	KOG3118@1\|root,KOG3118@2759\|Eukaryota,38E46@33154\|Opisthokonta,3NYA0@4751\|Fungi,1GSHG@112252\|Fungi incertae sedis
Description	Sas10 C-terminal domain
COG category	B
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12885	Gvermi12885	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1931327..1933051 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12885.t1.start1	Gvermi12885.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1931327..1931329 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12885.t1.CDS1	Gvermi12885.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1931327..1933051 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12885.t1.exon1	Gvermi12885.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1931327..1933051 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12885.t1.stop1	Gvermi12885.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1933049..1933051 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12885.t1	Gvermi12885.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1931327..1933051 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1931327..1933051+
coding sequence from alignment at ScGOVlb_425:1931327..1933051+

mRNA sequence

>Gvermi12885.t1 ID=Gvermi12885.t1|Name=Gvermi12885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=575bp
MGKKSHRPLLRGIIPSERDAEDLRSERPGIDENDEVDEFFEDRHQTMLKD
IDSDGSQLEGEPEPELVGTEVMRVHSSESEDSGDSDEDDEKMPVPPEEDK
KGWGARRKDWYGGDTHEFEIMEDNERDEALRDEEEEALRMQRKALEALKP
EDFRDEDDSETEPEKEESEDGKKPIDQAAAIEDIAVAADLMETAAPEVPA
LVKEMIQSHRAAQVLQTEAKSNETLRVIYHLHASLVNNVAYYLSLRTDPE
TQGAVDIRSHPVLLRILSIRKLLQKSSEFSICKDDDKNDKMEHEDPAIEI
KAFNDAKVSDTKLKSSDGNSLSKKKGEEGVAEDGNHEEMNEVLSKGKKRT
RKRRGRKRKRAEVSVEEDDDEEKVHNLLNAEDPEARLDIEDKEKQAKTKK
KKLRNIVNVMESQRKNLEGKRSAPPDEDLVHREKMKAQRSVNALQAADES
NADVQSEDDDKVMQKMLAKKAKKEARKERKAAAAEPHVYRLNDKTTPDGK
RKASSQVVRNKGLTRYRPRNKKTPRTKNRMAYDKAVKRRKGAVREYVGKP
GVSYSGEASGINMSARKGSKLSEV*

spliced messenger RNA

>Gvermi12885.t1 ID=Gvermi12885.t1|Name=Gvermi12885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1725bp|location=Sequence derived from alignment at ScGOVlb_425:1931327..1933051+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAAGAAGAGCCACAGGCCTCTATTGAGAGGTATAATACCCTCGGA
GCGAGATGCTGAGGATTTGCGAAGCGAAAGACCGGGCATTGATGAAAACG
ATGAAGTCGATGAATTTTTTGAAGACAGGCATCAAACCATGTTGAAAGAC
ATTGACTCGGACGGCTCTCAATTAGAAGGAGAACCTGAACCTGAGCTTGT
TGGGACTGAAGTCATGAGAGTGCATTCATCTGAATCTGAAGACTCTGGAG
ATTCAGATGAAGATGATGAAAAGATGCCTGTCCCTCCCGAGGAAGACAAA
AAAGGATGGGGTGCGAGAAGGAAAGACTGGTATGGCGGAGACACACATGA
GTTTGAAATCATGGAAGACAATGAACGCGATGAAGCTTTACGGGATGAGG
AAGAAGAGGCCCTACGAATGCAGCGGAAAGCATTGGAAGCATTGAAACCA
GAAGACTTTCGAGACGAAGATGATAGCGAGACGGAGCCAGAGAAAGAGGA
AAGCGAGGATGGGAAGAAGCCAATAGATCAAGCTGCTGCAATCGAGGATA
TAGCGGTGGCCGCAGACTTGATGGAGACAGCAGCGCCAGAAGTTCCCGCA
CTTGTGAAGGAGATGATTCAGAGCCACAGGGCTGCCCAAGTTTTGCAAAC
TGAAGCCAAATCGAATGAAACGCTTCGGGTCATATACCACTTGCATGCCT
CTTTGGTTAATAATGTCGCATATTATCTTTCGCTTCGAACAGATCCCGAA
ACGCAAGGTGCCGTAGACATACGATCTCATCCTGTTCTTCTTCGGATCTT
GAGCATTCGTAAATTGTTGCAAAAGTCGTCAGAGTTTTCCATCTGTAAAG
ATGACGACAAGAACGACAAAATGGAACATGAAGATCCTGCTATAGAGATC
AAAGCTTTTAATGACGCAAAGGTATCCGACACAAAGCTCAAAAGCAGTGA
CGGAAACTCACTGAGCAAGAAGAAAGGAGAAGAAGGCGTGGCTGAAGATG
GAAATCACGAGGAAATGAATGAAGTTCTATCAAAAGGTAAAAAGAGGACG
AGAAAAAGACGTGGAAGAAAGCGCAAAAGGGCAGAAGTTTCCGTTGAAGA
AGATGATGACGAAGAAAAGGTCCACAACCTTTTGAACGCCGAAGACCCGG
AAGCAAGGCTTGATATTGAGGATaaggagaagcaagcaaagacgaagaag
aagaaACTGAGAAATATTGTCAATGTTATGGAGTCTCAGCGCAAGAACCT
AGAGGGCAAACGAAGTGCCCCACCCGATGAAGACCTTGTACATCGAGAGA
AAATGAAGGCTCAGAGATCGGTAAATGCTTTACAGGCTGCTGATGAGTCT
AATGCTGACGTTCAGAGCGAGGACGACGATAAGGTAATGCAGAAAATGTT
GGCGAAGAAAGCAAAGAAGGAAGCGAGGAAAGAGCGCAAGGCTGCCGCTG
CCGAACCTCATGTTTACCGCTTGAATGACAAAACTACTCCTGATGGAAAG
CGGAAGGCATCTTCCCAAGTTGTGAGGAACAAGGGCTTGACGAGATACAG
GCCCCGGAATAAGAAGACGCCTCGCACCAAGAACCGGATGGCATATGACA
AGGCCGTGAAGAGGCGAAAGGGTGCTGTGCGCGAATACGTCGGAAAACCA
GGCGTAAGTTACTCGGGAGAAGCTTCGGGTATTAACATGTCAGCACGGAA
AGGATCAAAGCTTTCCGAAGTGTGA

protein sequence of Gvermi12885.t1

>Gvermi12885.t1 ID=Gvermi12885.t1|Name=Gvermi12885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=575bp
MGKKSHRPLLRGIIPSERDAEDLRSERPGIDENDEVDEFFEDRHQTMLKD
IDSDGSQLEGEPEPELVGTEVMRVHSSESEDSGDSDEDDEKMPVPPEEDK
KGWGARRKDWYGGDTHEFEIMEDNERDEALRDEEEEALRMQRKALEALKP
EDFRDEDDSETEPEKEESEDGKKPIDQAAAIEDIAVAADLMETAAPEVPA
LVKEMIQSHRAAQVLQTEAKSNETLRVIYHLHASLVNNVAYYLSLRTDPE
TQGAVDIRSHPVLLRILSIRKLLQKSSEFSICKDDDKNDKMEHEDPAIEI
KAFNDAKVSDTKLKSSDGNSLSKKKGEEGVAEDGNHEEMNEVLSKGKKRT
RKRRGRKRKRAEVSVEEDDDEEKVHNLLNAEDPEARLDIEDKEKQAKTKK
KKLRNIVNVMESQRKNLEGKRSAPPDEDLVHREKMKAQRSVNALQAADES
NADVQSEDDDKVMQKMLAKKAKKEARKERKAAAAEPHVYRLNDKTTPDGK
RKASSQVVRNKGLTRYRPRNKKTPRTKNRMAYDKAVKRRKGAVREYVGKP
GVSYSGEASGINMSARKGSKLSEV*

mRNA from alignment at ScGOVlb_425:1931327..1933051+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12885.t1 ID=Gvermi12885.t1|Name=Gvermi12885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1725bp|location=Sequence derived from alignment at ScGOVlb_425:1931327..1933051+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTAAGAAGAGCCACAGGCCTCTATTGAGAGGTATAATACCCTCGGA
GCGAGATGCTGAGGATTTGCGAAGCGAAAGACCGGGCATTGATGAAAACG
ATGAAGTCGATGAATTTTTTGAAGACAGGCATCAAACCATGTTGAAAGAC
ATTGACTCGGACGGCTCTCAATTAGAAGGAGAACCTGAACCTGAGCTTGT
TGGGACTGAAGTCATGAGAGTGCATTCATCTGAATCTGAAGACTCTGGAG
ATTCAGATGAAGATGATGAAAAGATGCCTGTCCCTCCCGAGGAAGACAAA
AAAGGATGGGGTGCGAGAAGGAAAGACTGGTATGGCGGAGACACACATGA
GTTTGAAATCATGGAAGACAATGAACGCGATGAAGCTTTACGGGATGAGG
AAGAAGAGGCCCTACGAATGCAGCGGAAAGCATTGGAAGCATTGAAACCA
GAAGACTTTCGAGACGAAGATGATAGCGAGACGGAGCCAGAGAAAGAGGA
AAGCGAGGATGGGAAGAAGCCAATAGATCAAGCTGCTGCAATCGAGGATA
TAGCGGTGGCCGCAGACTTGATGGAGACAGCAGCGCCAGAAGTTCCCGCA
CTTGTGAAGGAGATGATTCAGAGCCACAGGGCTGCCCAAGTTTTGCAAAC
TGAAGCCAAATCGAATGAAACGCTTCGGGTCATATACCACTTGCATGCCT
CTTTGGTTAATAATGTCGCATATTATCTTTCGCTTCGAACAGATCCCGAA
ACGCAAGGTGCCGTAGACATACGATCTCATCCTGTTCTTCTTCGGATCTT
GAGCATTCGTAAATTGTTGCAAAAGTCGTCAGAGTTTTCCATCTGTAAAG
ATGACGACAAGAACGACAAAATGGAACATGAAGATCCTGCTATAGAGATC
AAAGCTTTTAATGACGCAAAGGTATCCGACACAAAGCTCAAAAGCAGTGA
CGGAAACTCACTGAGCAAGAAGAAAGGAGAAGAAGGCGTGGCTGAAGATG
GAAATCACGAGGAAATGAATGAAGTTCTATCAAAAGGTAAAAAGAGGACG
AGAAAAAGACGTGGAAGAAAGCGCAAAAGGGCAGAAGTTTCCGTTGAAGA
AGATGATGACGAAGAAAAGGTCCACAACCTTTTGAACGCCGAAGACCCGG
AAGCAAGGCTTGATATTGAGGATaaggagaagcaagcaaagacgaagaag
aagaaACTGAGAAATATTGTCAATGTTATGGAGTCTCAGCGCAAGAACCT
AGAGGGCAAACGAAGTGCCCCACCCGATGAAGACCTTGTACATCGAGAGA
AAATGAAGGCTCAGAGATCGGTAAATGCTTTACAGGCTGCTGATGAGTCT
AATGCTGACGTTCAGAGCGAGGACGACGATAAGGTAATGCAGAAAATGTT
GGCGAAGAAAGCAAAGAAGGAAGCGAGGAAAGAGCGCAAGGCTGCCGCTG
CCGAACCTCATGTTTACCGCTTGAATGACAAAACTACTCCTGATGGAAAG
CGGAAGGCATCTTCCCAAGTTGTGAGGAACAAGGGCTTGACGAGATACAG
GCCCCGGAATAAGAAGACGCCTCGCACCAAGAACCGGATGGCATATGACA
AGGCCGTGAAGAGGCGAAAGGGTGCTGTGCGCGAATACGTCGGAAAACCA
GGCGTAAGTTACTCGGGAGAAGCTTCGGGTATTAACATGTCAGCACGGAA
AGGATCAAAGCTTTCCGAAGTGTGA

Coding sequence (CDS) from alignment at ScGOVlb_425:1931327..1933051+

>Gvermi12885.t1 ID=Gvermi12885.t1|Name=Gvermi12885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1725bp|location=Sequence derived from alignment at ScGOVlb_425:1931327..1933051+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTAAGAAGAGCCACAGGCCTCTATTGAGAGGTATAATACCCTCGGA
GCGAGATGCTGAGGATTTGCGAAGCGAAAGACCGGGCATTGATGAAAACG
ATGAAGTCGATGAATTTTTTGAAGACAGGCATCAAACCATGTTGAAAGAC
ATTGACTCGGACGGCTCTCAATTAGAAGGAGAACCTGAACCTGAGCTTGT
TGGGACTGAAGTCATGAGAGTGCATTCATCTGAATCTGAAGACTCTGGAG
ATTCAGATGAAGATGATGAAAAGATGCCTGTCCCTCCCGAGGAAGACAAA
AAAGGATGGGGTGCGAGAAGGAAAGACTGGTATGGCGGAGACACACATGA
GTTTGAAATCATGGAAGACAATGAACGCGATGAAGCTTTACGGGATGAGG
AAGAAGAGGCCCTACGAATGCAGCGGAAAGCATTGGAAGCATTGAAACCA
GAAGACTTTCGAGACGAAGATGATAGCGAGACGGAGCCAGAGAAAGAGGA
AAGCGAGGATGGGAAGAAGCCAATAGATCAAGCTGCTGCAATCGAGGATA
TAGCGGTGGCCGCAGACTTGATGGAGACAGCAGCGCCAGAAGTTCCCGCA
CTTGTGAAGGAGATGATTCAGAGCCACAGGGCTGCCCAAGTTTTGCAAAC
TGAAGCCAAATCGAATGAAACGCTTCGGGTCATATACCACTTGCATGCCT
CTTTGGTTAATAATGTCGCATATTATCTTTCGCTTCGAACAGATCCCGAA
ACGCAAGGTGCCGTAGACATACGATCTCATCCTGTTCTTCTTCGGATCTT
GAGCATTCGTAAATTGTTGCAAAAGTCGTCAGAGTTTTCCATCTGTAAAG
ATGACGACAAGAACGACAAAATGGAACATGAAGATCCTGCTATAGAGATC
AAAGCTTTTAATGACGCAAAGGTATCCGACACAAAGCTCAAAAGCAGTGA
CGGAAACTCACTGAGCAAGAAGAAAGGAGAAGAAGGCGTGGCTGAAGATG
GAAATCACGAGGAAATGAATGAAGTTCTATCAAAAGGTAAAAAGAGGACG
AGAAAAAGACGTGGAAGAAAGCGCAAAAGGGCAGAAGTTTCCGTTGAAGA
AGATGATGACGAAGAAAAGGTCCACAACCTTTTGAACGCCGAAGACCCGG
AAGCAAGGCTTGATATTGAGGATaaggagaagcaagcaaagacgaagaag
aagaaACTGAGAAATATTGTCAATGTTATGGAGTCTCAGCGCAAGAACCT
AGAGGGCAAACGAAGTGCCCCACCCGATGAAGACCTTGTACATCGAGAGA
AAATGAAGGCTCAGAGATCGGTAAATGCTTTACAGGCTGCTGATGAGTCT
AATGCTGACGTTCAGAGCGAGGACGACGATAAGGTAATGCAGAAAATGTT
GGCGAAGAAAGCAAAGAAGGAAGCGAGGAAAGAGCGCAAGGCTGCCGCTG
CCGAACCTCATGTTTACCGCTTGAATGACAAAACTACTCCTGATGGAAAG
CGGAAGGCATCTTCCCAAGTTGTGAGGAACAAGGGCTTGACGAGATACAG
GCCCCGGAATAAGAAGACGCCTCGCACCAAGAACCGGATGGCATATGACA
AGGCCGTGAAGAGGCGAAAGGGTGCTGTGCGCGAATACGTCGGAAAACCA
GGCGTAAGTTACTCGGGAGAAGCTTCGGGTATTAACATGTCAGCACGGAA
AGGATCAAAGCTTTCCGAAGTGTGA