Gvermi12877.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12877.t1
Unique NameGvermi12877.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length641
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1875632..1877554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP08851
PFAMsGlyco_trans_1_4
Max annot lvl3041|Chlorophyta
KEGG rclassRC00005,RC00059
KEGG koko:K09480
KEGG ReactionR04469
KEGG Pathwayko00561,ko01100,map00561,map01100
Evalue1.34e-128
EggNOG OGs2CMFA@1|root,2QQ73@2759|Eukaryota,37MAG@33090|Viridiplantae,34J3H@3041|Chlorophyta
EC2.4.1.241
DescriptionGlycosyltransferase family 4 protein
COG categoryS
CAZyGT4
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12877Gvermi12877Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1875632..1877554 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12877.t1.stop1Gvermi12877.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1875632..1875634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12877.t1.CDS1Gvermi12877.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1875632..1877554 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12877.t1.exon1Gvermi12877.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1875632..1877554 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12877.t1.start1Gvermi12877.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1877552..1877554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12877.t1Gvermi12877.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1875632..1877554 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12877.t1 ID=Gvermi12877.t1|Name=Gvermi12877.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=641bp
MKPIVSAAAAALLLFGSRRGGSDAKSLPNVEDSLDDECDNGNQEAASQRN
HFIEWDWSKSPDNSSIWNATAAVLSGLRSPLDLDALESGKKNDVLEGLSA
ALRGLKVFSGASSRDDDDGASEKDDPHDVRPLIAVTIGVTLFLLTRSPRA
SRRADLDAGAGDGTLVLDDDDINPVPRDYSSLSNFRSASRDIVVVTTAAL
PWMTGTAVNPLLRAVYLAKDGHNVTLVVPWLESPEDQRKVYPKGTLFTSR
SEQEMVILQWAREQVPNVQIAVAFYEGVYSKEFGSILPLGDITAMFDDDH
PRDICVLEEPEHLTWHHTGARWTSLFKFCVGVVHTNYIEYAKKHGMFGPQ
RALFLNFLNKWVCRSYCHRVIKLSDAVQTLPHSVTCNVHGVRDKFIDIGL
SRNGSPFEKGAYFLGKVLWAKGYRQLVDLMEEHYHRTEERLPIDFFGAGP
DLDAVKATVQDSYSLSKVQIHGFVVDHASEYLQRYKVYVNPSKSDVVCTA
TAEALAMGKFVVCLNHPSNEFFATFDNCLIYDTPEEFSKKLEYALANDPK
PLSDNDAFRLSWEAATERFYDASHVPASITTSGVDSALALTHKTICATLV
TPPANNAVRERYRAERKLQKELARRRQKRIRRAGQKLSVP*
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spliced messenger RNA

>Gvermi12877.t1 ID=Gvermi12877.t1|Name=Gvermi12877.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at ScGOVlb_425:1875632..1877554- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCATCGTCTCTGCCGCTGCTGCCGCGCTGCTTCTCTTTGGTAG
CCGGCGTGGCGGCAGCGACGCCAAGTCCCTACCGAATGTCGAGGACAGCC
TTGACGACGAATGTGATAATGGAAATCAAGAGGCTGCCTCTCAAAGAAAC
CATTTTATCGAATGGGATTGGTCCAAATCCCCAGATAACTCCTCGATATG
GAACGCTACGGCCGCAGTTTTGAGCGGCTTACGATCACCTCTCGACCTCG
ACGCATTGGAGTCTGGTAAGAAGAATGATGTTCTTGAGGGGCTGTCTGCA
GCACTACGCGGTCTCAAGGTTTTCTCGGGCGCTTCTTCCCGAGATGACGA
CGACGGTGCTTCTGAGAAGGACGACCCACACGATGTTCGTCCTCTCATCG
CTGTAACAATTGGTGTTACTCTGTTTCTTTTAACGCGTTCACCGCGCGCA
TCTCGGCGAGCAGACCTCGATGCTGGCGCGGGCGACGGCACTTTGGTTTT
GGATGACGATGACATCAATCCCGTTCCGCGCGACTACTCTTCGCTGTCCA
ATTTCCGTTCTGCTTCCAGGGATATTGTAGTCGTCACAACCGCCGCTCTG
CCGTGGATGACCGGTACCGCTGTCAACCCTCTTCTTAGGGCAGTATACCT
CGCGAAAGATGGACACAATGTGACTCTCGTAGTGCCATGGCTGGAGAGCC
CCGAGGATCAACGAAAGGTTTATCCGAAGGGCACGTTGTTCACCTCGCGC
AGTGAACAGGAGATGGTCATTTTGCAATGGGCCCGCGAGCAAGTACCGAA
TGTGCAAATTGCTGTCGCGTTTTATGAAGGCGTTTATTCAAAGGAATTCG
GCTCTATTCTTCCTTTGGGTGACATCACGGCTATGTTTGATGATGATCAT
CCGAGAGATATATGCGTGCTTGAGGAACCGGAACATCTTACTTGGCATCA
TACAGGCGCCCGATGGACCAGCTTATTCAAATTCTGTGTCGGTGTAGTAC
ATACAAACTACATTGAATACGCCAAGAAGCACGGTATGTTTGGACCTCAA
CGAGCTCTCTTTCTCAACTTTTTGAACAAATGGGTCTGCAGAAGTTATTG
TCATCGTGTCATCAAATTGTCGGATGCGGTGCAAACGCTCCCACACTCTG
TTACGTGCAATGTCCATGGTGTTCGCGACAAGTTCATCGACATCGGTCTC
TCACGAAATGGCAGTCCGTTTGAGAAAGGCGCTTATTTCTTAGGAAAGGT
TTTGTGGGCAAAAGGATACAGACAACTCGTGGACTTGATGGAAGAGCACT
ATCACAGAACTGAGGAACGTTTGCCCATCGACTTTTTCGGGGCCGGGCCA
GATTTGGATGCCGTGAAGGCAACAGTACAAGATAGCTACAGTCTCAGCAA
GGTGCAAATACATGGCTTTGTCGTCGATCATGCATCGGAATATTTGCAAA
GATATAAGGTGTACGTCAATCCGTCGAAGAGCGATGTTGTCTGTACGGCT
ACTGCCGAGGCATTGGCTATGGGCAAGTTTGTCGTATGCCTTAATCATCC
TAGCAACGAGTTCTTTGCAACTTTTGACAATTGCCTCATTTACGACACCC
CAGAAGAGTTTTCCAAGAAGCTTGAGTACGCATTGGCAAACGATCCCAAG
CCCTTGTCGGACAATGATGCTTTTAGGCTGTCTTGGGAGGCTGCTACGGA
GCGGTTTTACGACGCGTCTCACGTTCCCGCATCAATTACAACCTCTGGAG
TGGATTCTGCACTTGCATTGACCCACAAAACGATATGTGCGACTCTTGTA
ACGCCACCTGCGAACAATGCTGTAAGAGAACGTTACAGAGCTGAAAGGAA
GCTGCAGAAGGAACTCGCGCGTCGACGACAGAAGCGAATACGACGAGCGG
GTCAGAAACTATCAGTACCTTGA
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protein sequence of Gvermi12877.t1

>Gvermi12877.t1 ID=Gvermi12877.t1|Name=Gvermi12877.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=641bp
MKPIVSAAAAALLLFGSRRGGSDAKSLPNVEDSLDDECDNGNQEAASQRN
HFIEWDWSKSPDNSSIWNATAAVLSGLRSPLDLDALESGKKNDVLEGLSA
ALRGLKVFSGASSRDDDDGASEKDDPHDVRPLIAVTIGVTLFLLTRSPRA
SRRADLDAGAGDGTLVLDDDDINPVPRDYSSLSNFRSASRDIVVVTTAAL
PWMTGTAVNPLLRAVYLAKDGHNVTLVVPWLESPEDQRKVYPKGTLFTSR
SEQEMVILQWAREQVPNVQIAVAFYEGVYSKEFGSILPLGDITAMFDDDH
PRDICVLEEPEHLTWHHTGARWTSLFKFCVGVVHTNYIEYAKKHGMFGPQ
RALFLNFLNKWVCRSYCHRVIKLSDAVQTLPHSVTCNVHGVRDKFIDIGL
SRNGSPFEKGAYFLGKVLWAKGYRQLVDLMEEHYHRTEERLPIDFFGAGP
DLDAVKATVQDSYSLSKVQIHGFVVDHASEYLQRYKVYVNPSKSDVVCTA
TAEALAMGKFVVCLNHPSNEFFATFDNCLIYDTPEEFSKKLEYALANDPK
PLSDNDAFRLSWEAATERFYDASHVPASITTSGVDSALALTHKTICATLV
TPPANNAVRERYRAERKLQKELARRRQKRIRRAGQKLSVP*
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mRNA from alignment at ScGOVlb_425:1875632..1877554-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12877.t1 ID=Gvermi12877.t1|Name=Gvermi12877.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at ScGOVlb_425:1875632..1877554- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCCATCGTCTCTGCCGCTGCTGCCGCGCTGCTTCTCTTTGGTAG
CCGGCGTGGCGGCAGCGACGCCAAGTCCCTACCGAATGTCGAGGACAGCC
TTGACGACGAATGTGATAATGGAAATCAAGAGGCTGCCTCTCAAAGAAAC
CATTTTATCGAATGGGATTGGTCCAAATCCCCAGATAACTCCTCGATATG
GAACGCTACGGCCGCAGTTTTGAGCGGCTTACGATCACCTCTCGACCTCG
ACGCATTGGAGTCTGGTAAGAAGAATGATGTTCTTGAGGGGCTGTCTGCA
GCACTACGCGGTCTCAAGGTTTTCTCGGGCGCTTCTTCCCGAGATGACGA
CGACGGTGCTTCTGAGAAGGACGACCCACACGATGTTCGTCCTCTCATCG
CTGTAACAATTGGTGTTACTCTGTTTCTTTTAACGCGTTCACCGCGCGCA
TCTCGGCGAGCAGACCTCGATGCTGGCGCGGGCGACGGCACTTTGGTTTT
GGATGACGATGACATCAATCCCGTTCCGCGCGACTACTCTTCGCTGTCCA
ATTTCCGTTCTGCTTCCAGGGATATTGTAGTCGTCACAACCGCCGCTCTG
CCGTGGATGACCGGTACCGCTGTCAACCCTCTTCTTAGGGCAGTATACCT
CGCGAAAGATGGACACAATGTGACTCTCGTAGTGCCATGGCTGGAGAGCC
CCGAGGATCAACGAAAGGTTTATCCGAAGGGCACGTTGTTCACCTCGCGC
AGTGAACAGGAGATGGTCATTTTGCAATGGGCCCGCGAGCAAGTACCGAA
TGTGCAAATTGCTGTCGCGTTTTATGAAGGCGTTTATTCAAAGGAATTCG
GCTCTATTCTTCCTTTGGGTGACATCACGGCTATGTTTGATGATGATCAT
CCGAGAGATATATGCGTGCTTGAGGAACCGGAACATCTTACTTGGCATCA
TACAGGCGCCCGATGGACCAGCTTATTCAAATTCTGTGTCGGTGTAGTAC
ATACAAACTACATTGAATACGCCAAGAAGCACGGTATGTTTGGACCTCAA
CGAGCTCTCTTTCTCAACTTTTTGAACAAATGGGTCTGCAGAAGTTATTG
TCATCGTGTCATCAAATTGTCGGATGCGGTGCAAACGCTCCCACACTCTG
TTACGTGCAATGTCCATGGTGTTCGCGACAAGTTCATCGACATCGGTCTC
TCACGAAATGGCAGTCCGTTTGAGAAAGGCGCTTATTTCTTAGGAAAGGT
TTTGTGGGCAAAAGGATACAGACAACTCGTGGACTTGATGGAAGAGCACT
ATCACAGAACTGAGGAACGTTTGCCCATCGACTTTTTCGGGGCCGGGCCA
GATTTGGATGCCGTGAAGGCAACAGTACAAGATAGCTACAGTCTCAGCAA
GGTGCAAATACATGGCTTTGTCGTCGATCATGCATCGGAATATTTGCAAA
GATATAAGGTGTACGTCAATCCGTCGAAGAGCGATGTTGTCTGTACGGCT
ACTGCCGAGGCATTGGCTATGGGCAAGTTTGTCGTATGCCTTAATCATCC
TAGCAACGAGTTCTTTGCAACTTTTGACAATTGCCTCATTTACGACACCC
CAGAAGAGTTTTCCAAGAAGCTTGAGTACGCATTGGCAAACGATCCCAAG
CCCTTGTCGGACAATGATGCTTTTAGGCTGTCTTGGGAGGCTGCTACGGA
GCGGTTTTACGACGCGTCTCACGTTCCCGCATCAATTACAACCTCTGGAG
TGGATTCTGCACTTGCATTGACCCACAAAACGATATGTGCGACTCTTGTA
ACGCCACCTGCGAACAATGCTGTAAGAGAACGTTACAGAGCTGAAAGGAA
GCTGCAGAAGGAACTCGCGCGTCGACGACAGAAGCGAATACGACGAGCGG
GTCAGAAACTATCAGTACCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1875632..1877554-

>Gvermi12877.t1 ID=Gvermi12877.t1|Name=Gvermi12877.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1923bp|location=Sequence derived from alignment at ScGOVlb_425:1875632..1877554- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCCATCGTCTCTGCCGCTGCTGCCGCGCTGCTTCTCTTTGGTAG
CCGGCGTGGCGGCAGCGACGCCAAGTCCCTACCGAATGTCGAGGACAGCC
TTGACGACGAATGTGATAATGGAAATCAAGAGGCTGCCTCTCAAAGAAAC
CATTTTATCGAATGGGATTGGTCCAAATCCCCAGATAACTCCTCGATATG
GAACGCTACGGCCGCAGTTTTGAGCGGCTTACGATCACCTCTCGACCTCG
ACGCATTGGAGTCTGGTAAGAAGAATGATGTTCTTGAGGGGCTGTCTGCA
GCACTACGCGGTCTCAAGGTTTTCTCGGGCGCTTCTTCCCGAGATGACGA
CGACGGTGCTTCTGAGAAGGACGACCCACACGATGTTCGTCCTCTCATCG
CTGTAACAATTGGTGTTACTCTGTTTCTTTTAACGCGTTCACCGCGCGCA
TCTCGGCGAGCAGACCTCGATGCTGGCGCGGGCGACGGCACTTTGGTTTT
GGATGACGATGACATCAATCCCGTTCCGCGCGACTACTCTTCGCTGTCCA
ATTTCCGTTCTGCTTCCAGGGATATTGTAGTCGTCACAACCGCCGCTCTG
CCGTGGATGACCGGTACCGCTGTCAACCCTCTTCTTAGGGCAGTATACCT
CGCGAAAGATGGACACAATGTGACTCTCGTAGTGCCATGGCTGGAGAGCC
CCGAGGATCAACGAAAGGTTTATCCGAAGGGCACGTTGTTCACCTCGCGC
AGTGAACAGGAGATGGTCATTTTGCAATGGGCCCGCGAGCAAGTACCGAA
TGTGCAAATTGCTGTCGCGTTTTATGAAGGCGTTTATTCAAAGGAATTCG
GCTCTATTCTTCCTTTGGGTGACATCACGGCTATGTTTGATGATGATCAT
CCGAGAGATATATGCGTGCTTGAGGAACCGGAACATCTTACTTGGCATCA
TACAGGCGCCCGATGGACCAGCTTATTCAAATTCTGTGTCGGTGTAGTAC
ATACAAACTACATTGAATACGCCAAGAAGCACGGTATGTTTGGACCTCAA
CGAGCTCTCTTTCTCAACTTTTTGAACAAATGGGTCTGCAGAAGTTATTG
TCATCGTGTCATCAAATTGTCGGATGCGGTGCAAACGCTCCCACACTCTG
TTACGTGCAATGTCCATGGTGTTCGCGACAAGTTCATCGACATCGGTCTC
TCACGAAATGGCAGTCCGTTTGAGAAAGGCGCTTATTTCTTAGGAAAGGT
TTTGTGGGCAAAAGGATACAGACAACTCGTGGACTTGATGGAAGAGCACT
ATCACAGAACTGAGGAACGTTTGCCCATCGACTTTTTCGGGGCCGGGCCA
GATTTGGATGCCGTGAAGGCAACAGTACAAGATAGCTACAGTCTCAGCAA
GGTGCAAATACATGGCTTTGTCGTCGATCATGCATCGGAATATTTGCAAA
GATATAAGGTGTACGTCAATCCGTCGAAGAGCGATGTTGTCTGTACGGCT
ACTGCCGAGGCATTGGCTATGGGCAAGTTTGTCGTATGCCTTAATCATCC
TAGCAACGAGTTCTTTGCAACTTTTGACAATTGCCTCATTTACGACACCC
CAGAAGAGTTTTCCAAGAAGCTTGAGTACGCATTGGCAAACGATCCCAAG
CCCTTGTCGGACAATGATGCTTTTAGGCTGTCTTGGGAGGCTGCTACGGA
GCGGTTTTACGACGCGTCTCACGTTCCCGCATCAATTACAACCTCTGGAG
TGGATTCTGCACTTGCATTGACCCACAAAACGATATGTGCGACTCTTGTA
ACGCCACCTGCGAACAATGCTGTAAGAGAACGTTACAGAGCTGAAAGGAA
GCTGCAGAAGGAACTCGCGCGTCGACGACAGAAGCGAATACGACGAGCGG
GTCAGAAACTATCAGTACCTTGA
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