Gvermi12876.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12876.t1
Unique NameGvermi12876.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1874296..1875279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705059.1
Preferred nameATPAF2
PFAMsATP12
Max annot lvl2759|Eukaryota
KEGG koko:K07556,ko:K20456
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0016043,GO:0016604,GO:0016607,GO:0019904,GO:0022607,GO:0031974,GO:0031981,GO:0033615,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043461,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0051082,GO:0065003,GO:0070013,GO:0070071,GO:0071840
Evalue1.46e-35
EggNOG OGsCOG5387@1|root,KOG3015@2759|Eukaryota
Descriptionproton-transporting ATP synthase complex assembly
COG categoryO
BRITEko00000,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12876Gvermi12876Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1874296..1875279 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12876.t1.stop1Gvermi12876.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1874296..1874298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12876.t1.CDS1Gvermi12876.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1874296..1875279 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12876.t1.exon1Gvermi12876.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1874296..1875279 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12876.t1.start1Gvermi12876.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1875277..1875279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12876.t1Gvermi12876.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1874296..1875279 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12876.t1 ID=Gvermi12876.t1|Name=Gvermi12876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=328bp
MRKEVTCCAIRQIPCCISASSETLDTIRARAAIAMTILYSMRSTLSNARS
FSPTWKQFTRQLANQSKSASPRMTDSSGLGPRRFYENVTVESTSSPCPKE
RKKIRQGFAVHLDGKLALTPARHSLVAPSQTLAIAIADEWDAQQERIRPS
SMPLTRLLSASLDVVEDDMERFQQGIMRYIHTDSFALRAAYPKELVSRQE
EVFEPVETHLDEMDIHFRVVKGALDGTQDDETVNAVKDIVIGLDALQLAA
MDSAAGCGKSAAVALALWHGLDGDLAAKAARSEELWQADVWGSVEGGHDI
DHADVTVRMRAAEVVFRCAALDATEGR*
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spliced messenger RNA

>Gvermi12876.t1 ID=Gvermi12876.t1|Name=Gvermi12876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_425:1874296..1875279- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAAAGAGGTGACATGCTGCGCGATCAGGCAAATCCCGTGTTGCAT
TTCGGCTTCATCTGAGACGCTCGACACGATCCGGGCCAGAGCCGCCATTG
CCATGACGATTTTGTACAGCATGCGATCGACCCTCTCAAACGCCCGGTCA
TTTTCGCCAACATGGAAGCAATTCACGAGACAGCTTGCTAATCAAAGTAA
GTCCGCATCACCGCGAATGACAGATTCTTCCGGTCTCGGTCCGCGCCGCT
TTTATGAAAACGTGACTGTGGAATCCACTTCATCGCCGTGTCCCAAGGAG
CGGAAGAAAATCAGGCAGGGGTTTGCCGTCCATCTAGATGGTAAACTTGC
CCTGACGCCCGCGCGACATTCGCTGGTGGCACCATCACAAACGTTGGCTA
TCGCGATAGCAGATGAATGGGATGCACAACAGGAACGAATCCGTCCTTCC
TCTATGCCTCTTACTCGGTTGCTTTCCGCTTCTCTTGACGTTGTTGAAGA
TGACATGGAGCGCTTTCAACAAGGCATCATGCGATACATCCACACTGATT
CATTCGCTCTTCGAGCGGCATATCCAAAAGAACTTGTTTCTAGACAAGAA
GAAGTTTTCGAGCCCGTCGAAACGCATCTGGACGAAATGGACATTCATTT
TCGAGTGGTAAAGGGTGCCTTGGATGGAACGCAAGATGACGAAACAGTGA
ATGCTGTGAAAGATATTGTAATAGGTTTAGATGCGCTACAATTGGCGGCA
ATGGATAGTGCGGCGGGCTGTGGGAAAAGTGCTGCTGTGGCTCTGGCTTT
GTGGCATGGATTGGATGGAGATCTGGCTGCCAAAGCTGCACGCTCTGAAG
AGCTGTGGCAGGCGGATGTTTGGGGAAGTGTTGAAGGTGGACATGATATT
GACCATGCGGATGTGACTGTGAGAATGCGAGCAGCAGAAGTGGTTTTTCG
ATGCGCGGCACTAGACGCGACGGAGGGGAGGTGA
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protein sequence of Gvermi12876.t1

>Gvermi12876.t1 ID=Gvermi12876.t1|Name=Gvermi12876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=328bp
MRKEVTCCAIRQIPCCISASSETLDTIRARAAIAMTILYSMRSTLSNARS
FSPTWKQFTRQLANQSKSASPRMTDSSGLGPRRFYENVTVESTSSPCPKE
RKKIRQGFAVHLDGKLALTPARHSLVAPSQTLAIAIADEWDAQQERIRPS
SMPLTRLLSASLDVVEDDMERFQQGIMRYIHTDSFALRAAYPKELVSRQE
EVFEPVETHLDEMDIHFRVVKGALDGTQDDETVNAVKDIVIGLDALQLAA
MDSAAGCGKSAAVALALWHGLDGDLAAKAARSEELWQADVWGSVEGGHDI
DHADVTVRMRAAEVVFRCAALDATEGR*
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mRNA from alignment at ScGOVlb_425:1874296..1875279-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12876.t1 ID=Gvermi12876.t1|Name=Gvermi12876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_425:1874296..1875279- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGAAAAGAGGTGACATGCTGCGCGATCAGGCAAATCCCGTGTTGCAT
TTCGGCTTCATCTGAGACGCTCGACACGATCCGGGCCAGAGCCGCCATTG
CCATGACGATTTTGTACAGCATGCGATCGACCCTCTCAAACGCCCGGTCA
TTTTCGCCAACATGGAAGCAATTCACGAGACAGCTTGCTAATCAAAGTAA
GTCCGCATCACCGCGAATGACAGATTCTTCCGGTCTCGGTCCGCGCCGCT
TTTATGAAAACGTGACTGTGGAATCCACTTCATCGCCGTGTCCCAAGGAG
CGGAAGAAAATCAGGCAGGGGTTTGCCGTCCATCTAGATGGTAAACTTGC
CCTGACGCCCGCGCGACATTCGCTGGTGGCACCATCACAAACGTTGGCTA
TCGCGATAGCAGATGAATGGGATGCACAACAGGAACGAATCCGTCCTTCC
TCTATGCCTCTTACTCGGTTGCTTTCCGCTTCTCTTGACGTTGTTGAAGA
TGACATGGAGCGCTTTCAACAAGGCATCATGCGATACATCCACACTGATT
CATTCGCTCTTCGAGCGGCATATCCAAAAGAACTTGTTTCTAGACAAGAA
GAAGTTTTCGAGCCCGTCGAAACGCATCTGGACGAAATGGACATTCATTT
TCGAGTGGTAAAGGGTGCCTTGGATGGAACGCAAGATGACGAAACAGTGA
ATGCTGTGAAAGATATTGTAATAGGTTTAGATGCGCTACAATTGGCGGCA
ATGGATAGTGCGGCGGGCTGTGGGAAAAGTGCTGCTGTGGCTCTGGCTTT
GTGGCATGGATTGGATGGAGATCTGGCTGCCAAAGCTGCACGCTCTGAAG
AGCTGTGGCAGGCGGATGTTTGGGGAAGTGTTGAAGGTGGACATGATATT
GACCATGCGGATGTGACTGTGAGAATGCGAGCAGCAGAAGTGGTTTTTCG
ATGCGCGGCACTAGACGCGACGGAGGGGAGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1874296..1875279-

>Gvermi12876.t1 ID=Gvermi12876.t1|Name=Gvermi12876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=984bp|location=Sequence derived from alignment at ScGOVlb_425:1874296..1875279- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGAAAAGAGGTGACATGCTGCGCGATCAGGCAAATCCCGTGTTGCAT
TTCGGCTTCATCTGAGACGCTCGACACGATCCGGGCCAGAGCCGCCATTG
CCATGACGATTTTGTACAGCATGCGATCGACCCTCTCAAACGCCCGGTCA
TTTTCGCCAACATGGAAGCAATTCACGAGACAGCTTGCTAATCAAAGTAA
GTCCGCATCACCGCGAATGACAGATTCTTCCGGTCTCGGTCCGCGCCGCT
TTTATGAAAACGTGACTGTGGAATCCACTTCATCGCCGTGTCCCAAGGAG
CGGAAGAAAATCAGGCAGGGGTTTGCCGTCCATCTAGATGGTAAACTTGC
CCTGACGCCCGCGCGACATTCGCTGGTGGCACCATCACAAACGTTGGCTA
TCGCGATAGCAGATGAATGGGATGCACAACAGGAACGAATCCGTCCTTCC
TCTATGCCTCTTACTCGGTTGCTTTCCGCTTCTCTTGACGTTGTTGAAGA
TGACATGGAGCGCTTTCAACAAGGCATCATGCGATACATCCACACTGATT
CATTCGCTCTTCGAGCGGCATATCCAAAAGAACTTGTTTCTAGACAAGAA
GAAGTTTTCGAGCCCGTCGAAACGCATCTGGACGAAATGGACATTCATTT
TCGAGTGGTAAAGGGTGCCTTGGATGGAACGCAAGATGACGAAACAGTGA
ATGCTGTGAAAGATATTGTAATAGGTTTAGATGCGCTACAATTGGCGGCA
ATGGATAGTGCGGCGGGCTGTGGGAAAAGTGCTGCTGTGGCTCTGGCTTT
GTGGCATGGATTGGATGGAGATCTGGCTGCCAAAGCTGCACGCTCTGAAG
AGCTGTGGCAGGCGGATGTTTGGGGAAGTGTTGAAGGTGGACATGATATT
GACCATGCGGATGTGACTGTGAGAATGCGAGCAGCAGAAGTGGTTTTTCG
ATGCGCGGCACTAGACGCGACGGAGGGGAGGTGA
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