Gvermi12874.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12874.t1
Unique NameGvermi12874.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length566
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1871395..1873092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP08851
PFAMsGlyco_trans_1_4
Max annot lvl3041|Chlorophyta
KEGG rclassRC00005,RC00059
KEGG koko:K09480
KEGG ReactionR04469
KEGG Pathwayko00561,ko01100,map00561,map01100
Evalue4.86e-114
EggNOG OGs2CMFA@1|root,2QQ73@2759|Eukaryota,37MAG@33090|Viridiplantae,34J3H@3041|Chlorophyta
EC2.4.1.241
DescriptionGlycosyltransferase family 4 protein
COG categoryS
CAZyGT4
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12874Gvermi12874Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1871395..1873092 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12874.t1.stop1Gvermi12874.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1871395..1871397 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12874.t1.CDS1Gvermi12874.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1871395..1873092 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12874.t1.exon1Gvermi12874.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1871395..1873092 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12874.t1.start1Gvermi12874.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1873090..1873092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12874.t1Gvermi12874.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1871395..1873092 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12874.t1 ID=Gvermi12874.t1|Name=Gvermi12874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=566bp
MAPLLASILTALLTSSRPPFNQRHARPRPAPHYHLRHQVERPAEDAKQHP
VVALAAAYALFLIGRENAVARRLKRGRAPRQLAVSIDLFGSDHVEANVLH
GTPTRPTEAPRKKERAFLAEAHLTAASDMRTAKRDIAIVTTAAIPWMTGT
SVNPALRALYLAKDGHRVTLVVPWIPTVQQQMEIFSKGSPTFSSQEQQRE
YIKQWSFRQVPVLLDVLFYDGVYAPHLGSILPVGAVTDVIDAQLAKKDIC
ILEEPEHLTWHHSGKIWTQLFNYVVGIIHTNYIEYARGEHYGPQKAVALL
LLNMWVSKSYCHRIIKLSDAVQLFPNSITCNTHGVRDKFIEIGRKRCGPF
PRGAYFMGKVLWAKGYAELINCMIADYNMTGEPLHIDFYGAGPDVSAVRD
MLDTNPALTAVNFDARVADPASEWLQGYKVFVNASRSDVVCTATAEALAM
GKLVVCLDHPSNEFFATFPNCKTYRTPEEFSKVFRSAMQSKPIPLSNQDA
YRFTWEAATERLYDAMRMPLNQSKPSKVGAALANAHKTLSLIYPQPGKKL
QTTRSKESLSARSDS*
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spliced messenger RNA

>Gvermi12874.t1 ID=Gvermi12874.t1|Name=Gvermi12874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at ScGOVlb_425:1871395..1873092- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGTTGTTGGCTTCCATACTCACCGCGCTGCTCACCTCCTCGCG
TCCGCCGTTCAACCAGCGCCACGCGCGCCCGCGCCCCGCTCCCCACTATC
ACCTCCGCCACCAAGTCGAGCGCCCTGCTGAAGATGCAAAACAACACCCT
GTCGTGGCGCTGGCCGCCGCTTACGCACTGTTCCTTATCGGCAGGGAGAA
CGCCGTCGCCAGGAGATTGAAGCGGGGGAGGGCCCCCAGACAGCTGGCCG
TCTCCATCGACCTTTTCGGCAGCGATCATGTTGAGGCCAACGTGTTGCAC
GGAACGCCCACCAGACCCACCGAGGCACCTCGCAAGAAAGAGCGTGCATT
CCTTGCCGAGGCTCACCTCACCGCGGCGTCCGACATGCGCACTGCCAAGA
GAGACATCGCAATTGTCACTACCGCGGCTATCCCGTGGATGACTGGAACA
TCGGTGAACCCTGCGTTGCGAGCGTTGTACTTGGCGAAAGACGGCCACCG
CGTCACACTGGTAGTACCATGGATTCCCACCGTGCAGCAGCAGATGGAGA
TTTTTTCCAAAGGAAGTCCTACTTTTTCATCGCAGGAGCAGCAGCGCGAG
TACATCAAGCAGTGGTCTTTCAGACAGGTTCCCGTTCTCCTTGATGTCCT
GTTCTATGACGGTGTGTATGCGCCTCACCTCGGTTCCATTTTGCCTGTCG
GAGCCGTTACCGACGTTATTGACGCCCAACTTGCAAAAAAAGACATCTGC
ATTCTTGAGGAGCCTGAGCATTTAACTTGGCACCATTCGGGAAAGATATG
GACTCAATTATTTAACTACGTTGTTGGAATAATCCACACTAACTACATCG
AATACGCGAGGGGTGAGCATTACGGTCCACAAAAAGCCGTCGCTCTTTTG
CTGCTCAACATGTGGGTTTCGAAAAGCTACTGCCATCGGATCATAAAGCT
CTCGGACGCAGTTCAGCTCTTTCCTAACTCCATAACCTGCAACACGCACG
GTGTTCGAGACAAATTTATCGAAATTGGCAGAAAACGATGTGGGCCTTTT
CCTCGCGGTGCCTACTTTATGGGTAAAGTATTGTGGGCAAAGGGGTATGC
AGAGCTTATCAATTGTATGATTGCGGACTACAACATGACCGGCGAACCGT
TGCATATTGATTTCTACGGAGCAGGACCGGATGTCTCTGCAGTTCGTGAC
ATGCTTGATACGAACCCTGCTTTGACCGCGGTCAACTTCGATGCGCGCGT
TGCAGATCCTGCAAGCGAATGGCTACAAGGCTACAAGGTATTTGTCAATG
CATCCAGAAGCGATGTCGTTTGCACGGCAACTGCAGAGGCGTTGGCTATG
GGAAAGCTGGTCGTATGTCTTGATCATCCAAGCAATGAGTTTTTTGCAAC
CTTTCCAAATTGCAAGACCTATCGCACACCTGAAGAGTTTTCTAAGGTTT
TTCGAAGTGCAATGCAAAGCAAACCGATTCCGCTCTCAAATCAAGATGCA
TACAGATTCACATGGGAGGCGGCTACGGAAAGGTTATATGATGCAATGCG
AATGCCGTTGAACCAGAGCAAGCCCAGCAAAGTTGGCGCCGCTTTAGCTA
ATGCTCACAAGACTCTTTCACTAATCTACCCGCAACCTGGAAAGAAGCTC
CAAACAACGAGGTCGAAAGAGTCTCTCTCAGCTCGTTCCGATTCTTGA
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protein sequence of Gvermi12874.t1

>Gvermi12874.t1 ID=Gvermi12874.t1|Name=Gvermi12874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=566bp
MAPLLASILTALLTSSRPPFNQRHARPRPAPHYHLRHQVERPAEDAKQHP
VVALAAAYALFLIGRENAVARRLKRGRAPRQLAVSIDLFGSDHVEANVLH
GTPTRPTEAPRKKERAFLAEAHLTAASDMRTAKRDIAIVTTAAIPWMTGT
SVNPALRALYLAKDGHRVTLVVPWIPTVQQQMEIFSKGSPTFSSQEQQRE
YIKQWSFRQVPVLLDVLFYDGVYAPHLGSILPVGAVTDVIDAQLAKKDIC
ILEEPEHLTWHHSGKIWTQLFNYVVGIIHTNYIEYARGEHYGPQKAVALL
LLNMWVSKSYCHRIIKLSDAVQLFPNSITCNTHGVRDKFIEIGRKRCGPF
PRGAYFMGKVLWAKGYAELINCMIADYNMTGEPLHIDFYGAGPDVSAVRD
MLDTNPALTAVNFDARVADPASEWLQGYKVFVNASRSDVVCTATAEALAM
GKLVVCLDHPSNEFFATFPNCKTYRTPEEFSKVFRSAMQSKPIPLSNQDA
YRFTWEAATERLYDAMRMPLNQSKPSKVGAALANAHKTLSLIYPQPGKKL
QTTRSKESLSARSDS*
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mRNA from alignment at ScGOVlb_425:1871395..1873092-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12874.t1 ID=Gvermi12874.t1|Name=Gvermi12874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at ScGOVlb_425:1871395..1873092- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGTTGTTGGCTTCCATACTCACCGCGCTGCTCACCTCCTCGCG
TCCGCCGTTCAACCAGCGCCACGCGCGCCCGCGCCCCGCTCCCCACTATC
ACCTCCGCCACCAAGTCGAGCGCCCTGCTGAAGATGCAAAACAACACCCT
GTCGTGGCGCTGGCCGCCGCTTACGCACTGTTCCTTATCGGCAGGGAGAA
CGCCGTCGCCAGGAGATTGAAGCGGGGGAGGGCCCCCAGACAGCTGGCCG
TCTCCATCGACCTTTTCGGCAGCGATCATGTTGAGGCCAACGTGTTGCAC
GGAACGCCCACCAGACCCACCGAGGCACCTCGCAAGAAAGAGCGTGCATT
CCTTGCCGAGGCTCACCTCACCGCGGCGTCCGACATGCGCACTGCCAAGA
GAGACATCGCAATTGTCACTACCGCGGCTATCCCGTGGATGACTGGAACA
TCGGTGAACCCTGCGTTGCGAGCGTTGTACTTGGCGAAAGACGGCCACCG
CGTCACACTGGTAGTACCATGGATTCCCACCGTGCAGCAGCAGATGGAGA
TTTTTTCCAAAGGAAGTCCTACTTTTTCATCGCAGGAGCAGCAGCGCGAG
TACATCAAGCAGTGGTCTTTCAGACAGGTTCCCGTTCTCCTTGATGTCCT
GTTCTATGACGGTGTGTATGCGCCTCACCTCGGTTCCATTTTGCCTGTCG
GAGCCGTTACCGACGTTATTGACGCCCAACTTGCAAAAAAAGACATCTGC
ATTCTTGAGGAGCCTGAGCATTTAACTTGGCACCATTCGGGAAAGATATG
GACTCAATTATTTAACTACGTTGTTGGAATAATCCACACTAACTACATCG
AATACGCGAGGGGTGAGCATTACGGTCCACAAAAAGCCGTCGCTCTTTTG
CTGCTCAACATGTGGGTTTCGAAAAGCTACTGCCATCGGATCATAAAGCT
CTCGGACGCAGTTCAGCTCTTTCCTAACTCCATAACCTGCAACACGCACG
GTGTTCGAGACAAATTTATCGAAATTGGCAGAAAACGATGTGGGCCTTTT
CCTCGCGGTGCCTACTTTATGGGTAAAGTATTGTGGGCAAAGGGGTATGC
AGAGCTTATCAATTGTATGATTGCGGACTACAACATGACCGGCGAACCGT
TGCATATTGATTTCTACGGAGCAGGACCGGATGTCTCTGCAGTTCGTGAC
ATGCTTGATACGAACCCTGCTTTGACCGCGGTCAACTTCGATGCGCGCGT
TGCAGATCCTGCAAGCGAATGGCTACAAGGCTACAAGGTATTTGTCAATG
CATCCAGAAGCGATGTCGTTTGCACGGCAACTGCAGAGGCGTTGGCTATG
GGAAAGCTGGTCGTATGTCTTGATCATCCAAGCAATGAGTTTTTTGCAAC
CTTTCCAAATTGCAAGACCTATCGCACACCTGAAGAGTTTTCTAAGGTTT
TTCGAAGTGCAATGCAAAGCAAACCGATTCCGCTCTCAAATCAAGATGCA
TACAGATTCACATGGGAGGCGGCTACGGAAAGGTTATATGATGCAATGCG
AATGCCGTTGAACCAGAGCAAGCCCAGCAAAGTTGGCGCCGCTTTAGCTA
ATGCTCACAAGACTCTTTCACTAATCTACCCGCAACCTGGAAAGAAGCTC
CAAACAACGAGGTCGAAAGAGTCTCTCTCAGCTCGTTCCGATTCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1871395..1873092-

>Gvermi12874.t1 ID=Gvermi12874.t1|Name=Gvermi12874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1698bp|location=Sequence derived from alignment at ScGOVlb_425:1871395..1873092- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGTTGTTGGCTTCCATACTCACCGCGCTGCTCACCTCCTCGCG
TCCGCCGTTCAACCAGCGCCACGCGCGCCCGCGCCCCGCTCCCCACTATC
ACCTCCGCCACCAAGTCGAGCGCCCTGCTGAAGATGCAAAACAACACCCT
GTCGTGGCGCTGGCCGCCGCTTACGCACTGTTCCTTATCGGCAGGGAGAA
CGCCGTCGCCAGGAGATTGAAGCGGGGGAGGGCCCCCAGACAGCTGGCCG
TCTCCATCGACCTTTTCGGCAGCGATCATGTTGAGGCCAACGTGTTGCAC
GGAACGCCCACCAGACCCACCGAGGCACCTCGCAAGAAAGAGCGTGCATT
CCTTGCCGAGGCTCACCTCACCGCGGCGTCCGACATGCGCACTGCCAAGA
GAGACATCGCAATTGTCACTACCGCGGCTATCCCGTGGATGACTGGAACA
TCGGTGAACCCTGCGTTGCGAGCGTTGTACTTGGCGAAAGACGGCCACCG
CGTCACACTGGTAGTACCATGGATTCCCACCGTGCAGCAGCAGATGGAGA
TTTTTTCCAAAGGAAGTCCTACTTTTTCATCGCAGGAGCAGCAGCGCGAG
TACATCAAGCAGTGGTCTTTCAGACAGGTTCCCGTTCTCCTTGATGTCCT
GTTCTATGACGGTGTGTATGCGCCTCACCTCGGTTCCATTTTGCCTGTCG
GAGCCGTTACCGACGTTATTGACGCCCAACTTGCAAAAAAAGACATCTGC
ATTCTTGAGGAGCCTGAGCATTTAACTTGGCACCATTCGGGAAAGATATG
GACTCAATTATTTAACTACGTTGTTGGAATAATCCACACTAACTACATCG
AATACGCGAGGGGTGAGCATTACGGTCCACAAAAAGCCGTCGCTCTTTTG
CTGCTCAACATGTGGGTTTCGAAAAGCTACTGCCATCGGATCATAAAGCT
CTCGGACGCAGTTCAGCTCTTTCCTAACTCCATAACCTGCAACACGCACG
GTGTTCGAGACAAATTTATCGAAATTGGCAGAAAACGATGTGGGCCTTTT
CCTCGCGGTGCCTACTTTATGGGTAAAGTATTGTGGGCAAAGGGGTATGC
AGAGCTTATCAATTGTATGATTGCGGACTACAACATGACCGGCGAACCGT
TGCATATTGATTTCTACGGAGCAGGACCGGATGTCTCTGCAGTTCGTGAC
ATGCTTGATACGAACCCTGCTTTGACCGCGGTCAACTTCGATGCGCGCGT
TGCAGATCCTGCAAGCGAATGGCTACAAGGCTACAAGGTATTTGTCAATG
CATCCAGAAGCGATGTCGTTTGCACGGCAACTGCAGAGGCGTTGGCTATG
GGAAAGCTGGTCGTATGTCTTGATCATCCAAGCAATGAGTTTTTTGCAAC
CTTTCCAAATTGCAAGACCTATCGCACACCTGAAGAGTTTTCTAAGGTTT
TTCGAAGTGCAATGCAAAGCAAACCGATTCCGCTCTCAAATCAAGATGCA
TACAGATTCACATGGGAGGCGGCTACGGAAAGGTTATATGATGCAATGCG
AATGCCGTTGAACCAGAGCAAGCCCAGCAAAGTTGGCGCCGCTTTAGCTA
ATGCTCACAAGACTCTTTCACTAATCTACCCGCAACCTGGAAAGAAGCTC
CAAACAACGAGGTCGAAAGAGTCTCTCTCAGCTCGTTCCGATTCTTGA
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