Gvermi12872.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12872.t1
Unique NameGvermi12872.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1867100..1867999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128421.JAGA01000002_gene351
Preferred namepanC
PFAMsPantoate_ligase
Max annot lvl2|Bacteria
KEGG rclassRC00096,RC00141
KEGG koko:K01918
KEGG ReactionR02473
KEGG Pathwayko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110
KEGG ModuleM00119
GOsGO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605
Evalue3.84e-68
EggNOG OGsCOG0414@1|root,COG0414@2|Bacteria,2NP0J@2323|unclassified Bacteria
EC6.3.2.1
DescriptionCatalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12872Gvermi12872Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1867100..1867999 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12872.t1.stop1Gvermi12872.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1867100..1867102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12872.t1.CDS1Gvermi12872.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1867100..1867999 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12872.t1.exon1Gvermi12872.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1867100..1867999 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12872.t1.start1Gvermi12872.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1867997..1867999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12872.t1Gvermi12872.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1867100..1867999 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12872.t1 ID=Gvermi12872.t1|Name=Gvermi12872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=300bp
MNSNVGEKRKQIEIFQTARDLVAHLDSLPKPGTLGIVMTMGALHDGHGAL
VRQCVSENDVCMVTLFVNPLQFGAHEDLSTYPRTEERDKELFEKWGASIL
FAPKVEEVYPASFDTHILCGAGNPERNELSEGAFRPIFFRGVATVVAKTL
SLSRADRCYFGLKDAQQCAVVKRVVNDLWLRCEVRLVETQREEDGLAMSS
RNAYLTEEQRRVANTLWKALCCAKEIWNGGVRDIETLRQTVRGEIEQNHM
FQLMYVSICDRWTMREMKGELSRQQGALVLCVAAMLGKARLIDNIVLAE*
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spliced messenger RNA

>Gvermi12872.t1 ID=Gvermi12872.t1|Name=Gvermi12872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=900bp|location=Sequence derived from alignment at ScGOVlb_425:1867100..1867999- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCAAATGTTGGCGAGAAAAGGAAGCAGATCGAAATCTTTCAAAC
GGCCAGGGATTTGGTCGCGCACTTAGACTCGTTGCCAAAACCAGGAACGT
TGGGAATTGTGATGACTATGGGCGCACTTCATGACGGACATGGAGCTTTG
GTAAGACAATGTGTCTCGGAAAATGATGTATGTATGGTCACATTGTTTGT
AAATCCCTTGCAGTTTGGTGCTCATGAAGATTTATCAACATATCCAAGGA
CAGAAGAACGTGACAAAGAACTATTTGAGAAATGGGGTGCAAGTATATTG
TTCGCGCCGAAAGTAGAAGAGGTGTACCCCGCGTCTTTTGACACCCATAT
ACTCTGCGGGGCAGGAAACCCAGAAAGGAATGAATTAAGCGAGGGAGCTT
TTCGACCGATATTCTTCCGCGGTGTAGCAACAGTTGTTGCGAAAACGCTG
TCCTTATCCAGAGCAGATAGGTGTTATTTTGGTTTGAAAGACGCGCAGCA
GTGTGCAGTGGTGAAGCGAGTTGTGAATGATCTGTGGCTCAGATGCGAAG
TTAGACTTGTAGAAACACAAAGGGAAGAGGATGGGCTAGCAATGTCATCA
AGGAACGCCTATCTTACCGAGGAGCAACGTAGAGTAGCCAATACACTTTG
GAAAGCTTTATGTTGTGCAAAAGAAATTTGGAATGGCGGCGTGCGTGATA
TAGAAACCCTGCGGCAGACCGTAAGAGGCGAAATCGAGCAGAACCACATG
TTTCAGTTGATGTATGTCAGTATCTGTGACCGATGGACAATGCGAGAGAT
GAAGGGCGAATTGTCTCGCCAACAGGGAGCCTTGGTGCTTTGCGTAGCAG
CCATGCTCGGAAAAGCCCGTCTAATTGACAATATCGTCCTCGCCGAGTGA
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protein sequence of Gvermi12872.t1

>Gvermi12872.t1 ID=Gvermi12872.t1|Name=Gvermi12872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=300bp
MNSNVGEKRKQIEIFQTARDLVAHLDSLPKPGTLGIVMTMGALHDGHGAL
VRQCVSENDVCMVTLFVNPLQFGAHEDLSTYPRTEERDKELFEKWGASIL
FAPKVEEVYPASFDTHILCGAGNPERNELSEGAFRPIFFRGVATVVAKTL
SLSRADRCYFGLKDAQQCAVVKRVVNDLWLRCEVRLVETQREEDGLAMSS
RNAYLTEEQRRVANTLWKALCCAKEIWNGGVRDIETLRQTVRGEIEQNHM
FQLMYVSICDRWTMREMKGELSRQQGALVLCVAAMLGKARLIDNIVLAE*
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mRNA from alignment at ScGOVlb_425:1867100..1867999-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12872.t1 ID=Gvermi12872.t1|Name=Gvermi12872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=900bp|location=Sequence derived from alignment at ScGOVlb_425:1867100..1867999- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATTCAAATGTTGGCGAGAAAAGGAAGCAGATCGAAATCTTTCAAAC
GGCCAGGGATTTGGTCGCGCACTTAGACTCGTTGCCAAAACCAGGAACGT
TGGGAATTGTGATGACTATGGGCGCACTTCATGACGGACATGGAGCTTTG
GTAAGACAATGTGTCTCGGAAAATGATGTATGTATGGTCACATTGTTTGT
AAATCCCTTGCAGTTTGGTGCTCATGAAGATTTATCAACATATCCAAGGA
CAGAAGAACGTGACAAAGAACTATTTGAGAAATGGGGTGCAAGTATATTG
TTCGCGCCGAAAGTAGAAGAGGTGTACCCCGCGTCTTTTGACACCCATAT
ACTCTGCGGGGCAGGAAACCCAGAAAGGAATGAATTAAGCGAGGGAGCTT
TTCGACCGATATTCTTCCGCGGTGTAGCAACAGTTGTTGCGAAAACGCTG
TCCTTATCCAGAGCAGATAGGTGTTATTTTGGTTTGAAAGACGCGCAGCA
GTGTGCAGTGGTGAAGCGAGTTGTGAATGATCTGTGGCTCAGATGCGAAG
TTAGACTTGTAGAAACACAAAGGGAAGAGGATGGGCTAGCAATGTCATCA
AGGAACGCCTATCTTACCGAGGAGCAACGTAGAGTAGCCAATACACTTTG
GAAAGCTTTATGTTGTGCAAAAGAAATTTGGAATGGCGGCGTGCGTGATA
TAGAAACCCTGCGGCAGACCGTAAGAGGCGAAATCGAGCAGAACCACATG
TTTCAGTTGATGTATGTCAGTATCTGTGACCGATGGACAATGCGAGAGAT
GAAGGGCGAATTGTCTCGCCAACAGGGAGCCTTGGTGCTTTGCGTAGCAG
CCATGCTCGGAAAAGCCCGTCTAATTGACAATATCGTCCTCGCCGAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1867100..1867999-

>Gvermi12872.t1 ID=Gvermi12872.t1|Name=Gvermi12872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=900bp|location=Sequence derived from alignment at ScGOVlb_425:1867100..1867999- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATTCAAATGTTGGCGAGAAAAGGAAGCAGATCGAAATCTTTCAAAC
GGCCAGGGATTTGGTCGCGCACTTAGACTCGTTGCCAAAACCAGGAACGT
TGGGAATTGTGATGACTATGGGCGCACTTCATGACGGACATGGAGCTTTG
GTAAGACAATGTGTCTCGGAAAATGATGTATGTATGGTCACATTGTTTGT
AAATCCCTTGCAGTTTGGTGCTCATGAAGATTTATCAACATATCCAAGGA
CAGAAGAACGTGACAAAGAACTATTTGAGAAATGGGGTGCAAGTATATTG
TTCGCGCCGAAAGTAGAAGAGGTGTACCCCGCGTCTTTTGACACCCATAT
ACTCTGCGGGGCAGGAAACCCAGAAAGGAATGAATTAAGCGAGGGAGCTT
TTCGACCGATATTCTTCCGCGGTGTAGCAACAGTTGTTGCGAAAACGCTG
TCCTTATCCAGAGCAGATAGGTGTTATTTTGGTTTGAAAGACGCGCAGCA
GTGTGCAGTGGTGAAGCGAGTTGTGAATGATCTGTGGCTCAGATGCGAAG
TTAGACTTGTAGAAACACAAAGGGAAGAGGATGGGCTAGCAATGTCATCA
AGGAACGCCTATCTTACCGAGGAGCAACGTAGAGTAGCCAATACACTTTG
GAAAGCTTTATGTTGTGCAAAAGAAATTTGGAATGGCGGCGTGCGTGATA
TAGAAACCCTGCGGCAGACCGTAAGAGGCGAAATCGAGCAGAACCACATG
TTTCAGTTGATGTATGTCAGTATCTGTGACCGATGGACAATGCGAGAGAT
GAAGGGCGAATTGTCTCGCCAACAGGGAGCCTTGGTGCTTTGCGTAGCAG
CCATGCTCGGAAAAGCCCGTCTAATTGACAATATCGTCCTCGCCGAGTGA
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