Gvermi12868.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12868.t1
Unique NameGvermi12868.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1852941..1853763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S288_37V6.1
PFAMsATC_hydrolase
Max annot lvl33090|Viridiplantae
Evalue1.37e-15
EggNOG OGs2E9G6@1|root,2SFU7@2759|Eukaryota,382RP@33090|Viridiplantae
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12868Gvermi12868Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1852941..1853763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12868.t1Gvermi12868.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1852941..1853763 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12868.t1.stop1Gvermi12868.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1852941..1852943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12868.t1.CDS1Gvermi12868.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1852941..1853146 -
Gvermi12868.t1.CDS2Gvermi12868.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1853259..1853763 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12868.t1.exon1Gvermi12868.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1852941..1853146 -
Gvermi12868.t1.exon2Gvermi12868.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1853259..1853763 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12868.t1.intron1Gvermi12868.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1853147..1853258 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12868.t1.start1Gvermi12868.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1853761..1853763 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12868.t1 ID=Gvermi12868.t1|Name=Gvermi12868.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=237bp
MPSNRAFRFVYLRTLPLVKQPELGEDVEQIVGQIEDGTRRLCEKHLRSAS
DGRAAVHLHTTALAIATHRVLSPRIKNEKRVANIIRCGFGAELLEESSVP
DEHAKQAKTMGRTRPDFWIIRAALWFSLDRMGAVRRMTENMVKDFGSTFE
TAKEDEVVDGAQHHSLFVKRCYYNELCRSEGVPHLTSIFCALDKAIYSPI
TTSSHGISFTLDKTLADESESDSTDKRCEFRFRQHK*
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spliced messenger RNA

>Gvermi12868.t1 ID=Gvermi12868.t1|Name=Gvermi12868.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=711bp|location=Sequence derived from alignment at ScGOVlb_425:1852941..1853763- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCGAACCGGGCGTTTCGATTTGTGTATCTGCGGACGCTTCCGTT
GGTGAAGCAGCCAGAGCTCGGGGAGGACGTGGAACAAATCGTGGGCCAGA
TAGAAGATGGAACTCGAAGGCTGTGCGAAAAGCACCTGCGCTCAGCCAGC
GACGGGCGCGCCGCCGTTCATTTGCACACAACGGCGCTGGCCATAGCGAC
TCATCGAGTGTTGTCGCCGCGCATCAAGAACGAAAAGCGCGTGGCAAACA
TCATCAGGTGTGGGTTTGGCGCCGAGCTGTTGGAAGAGTCGTCTGTTCCG
GACGAACATGCAAAGCAAGCGAAGACGATGGGCAGAACAAGACCAGACTT
TTGGATAATACGAGCGGCTCTGTGGTTCTCGTTGGACCGCATGGGCGCCG
TTCGGCGCATGACGGAGAACATGGTGAAGGACTTTGGGTCGACGTTCGAA
ACGGCCAAGGAGGACGAAGTGGTGGACGGGGCTCAGCACCATTCGCTGTT
TGTGAAAAGGTGCTACTACAACGAACTGTGCCGAAGTGAAGGGGTGCCGC
ATCTGACGAGCATATTCTGCGCGTTGGACAAGGCCATCTACTCGCCCATC
ACGACGAGCAGTCACGGCATCTCCTTCACGCTAGACAAGACATTAGCGGA
CGAGAGTGAGAGTGACAGCACAGACAAGCGCTGCGAGTTCCGATTCAGGC
AGCACAAGTAG
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protein sequence of Gvermi12868.t1

>Gvermi12868.t1 ID=Gvermi12868.t1|Name=Gvermi12868.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=237bp
MPSNRAFRFVYLRTLPLVKQPELGEDVEQIVGQIEDGTRRLCEKHLRSAS
DGRAAVHLHTTALAIATHRVLSPRIKNEKRVANIIRCGFGAELLEESSVP
DEHAKQAKTMGRTRPDFWIIRAALWFSLDRMGAVRRMTENMVKDFGSTFE
TAKEDEVVDGAQHHSLFVKRCYYNELCRSEGVPHLTSIFCALDKAIYSPI
TTSSHGISFTLDKTLADESESDSTDKRCEFRFRQHK*
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mRNA from alignment at ScGOVlb_425:1852941..1853763-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12868.t1 ID=Gvermi12868.t1|Name=Gvermi12868.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=823bp|location=Sequence derived from alignment at ScGOVlb_425:1852941..1853763- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCGAACCGGGCGTTTCGATTTGTGTATCTGCGGACGCTTCCGTT
GGTGAAGCAGCCAGAGCTCGGGGAGGACGTGGAACAAATCGTGGGCCAGA
TAGAAGATGGAACTCGAAGGCTGTGCGAAAAGCACCTGCGCTCAGCCAGC
GACGGGCGCGCCGCCGTTCATTTGCACACAACGGCGCTGGCCATAGCGAC
TCATCGAGTGTTGTCGCCGCGCATCAAGAACGAAAAGCGCGTGGCAAACA
TCATCAGGTGTGGGTTTGGCGCCGAGCTGTTGGAAGAGTCGTCTGTTCCG
GACGAACATGCAAAGCAAGCGAAGACGATGGGCAGAACAAGACCAGACTT
TTGGATAATACGAGCGGCTCTGTGGTTCTCGTTGGACCGCATGGGCGCCG
TTCGGCGCATGACGGAGAACATGGTGAAGGACTTTGGGTCGACGTTCGAA
ACGGCCAAGGAGGACGAAGTGGTGGACGGGGCTCAGCACCATTCGCTGTT
TGTGAGTAAGTGAGCGCAGCGCGACTTGGTGGTGGAAGGGGTATCGATGC
GCGGGGAAGGGGGCTCGTCGAATCTAACTCAACATGTTGTTTTGTCGGAA
ATACAAATCATTTACAGAAAGGTGCTACTACAACGAACTGTGCCGAAGTG
AAGGGGTGCCGCATCTGACGAGCATATTCTGCGCGTTGGACAAGGCCATC
TACTCGCCCATCACGACGAGCAGTCACGGCATCTCCTTCACGCTAGACAA
GACATTAGCGGACGAGAGTGAGAGTGACAGCACAGACAAGCGCTGCGAGT
TCCGATTCAGGCAGCACAAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1852941..1853763-

>Gvermi12868.t1 ID=Gvermi12868.t1|Name=Gvermi12868.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=711bp|location=Sequence derived from alignment at ScGOVlb_425:1852941..1853763- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCGAACCGGGCGTTTCGATTTGTGTATCTGCGGACGCTTCCGTT
GGTGAAGCAGCCAGAGCTCGGGGAGGACGTGGAACAAATCGTGGGCCAGA
TAGAAGATGGAACTCGAAGGCTGTGCGAAAAGCACCTGCGCTCAGCCAGC
GACGGGCGCGCCGCCGTTCATTTGCACACAACGGCGCTGGCCATAGCGAC
TCATCGAGTGTTGTCGCCGCGCATCAAGAACGAAAAGCGCGTGGCAAACA
TCATCAGGTGTGGGTTTGGCGCCGAGCTGTTGGAAGAGTCGTCTGTTCCG
GACGAACATGCAAAGCAAGCGAAGACGATGGGCAGAACAAGACCAGACTT
TTGGATAATACGAGCGGCTCTGTGGTTCTCGTTGGACCGCATGGGCGCCG
TTCGGCGCATGACGGAGAACATGGTGAAGGACTTTGGGTCGACGTTCGAA
ACGGCCAAGGAGGACGAAGTGGTGGACGGGGCTCAGCACCATTCGCTGTT
TGTGAAAAGGTGCTACTACAACGAACTGTGCCGAAGTGAAGGGGTGCCGC
ATCTGACGAGCATATTCTGCGCGTTGGACAAGGCCATCTACTCGCCCATC
ACGACGAGCAGTCACGGCATCTCCTTCACGCTAGACAAGACATTAGCGGA
CGAGAGTGAGAGTGACAGCACAGACAAGCGCTGCGAGTTCCGATTCAGGC
AGCACAAGTAG
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