Gvermi12867.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12867.t2
Unique NameGvermi12867.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1846556..1847505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12867Gvermi12867Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1846556..1852720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12867.t2Gvermi12867.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1846556..1847505 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12867.t2.start1Gvermi12867.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1846556..1846558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12867.t2.CDS1Gvermi12867.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1846556..1847372 +
Gvermi12867.t2.CDS2Gvermi12867.t2.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1847498..1847505 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12867.t2.exon1Gvermi12867.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1846556..1847372 +
Gvermi12867.t2.exon2Gvermi12867.t2.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1847498..1847505 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12867.t2.intron1Gvermi12867.t2.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1847373..1847497 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12867.t2.stop1Gvermi12867.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1847503..1847505 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12867.t2 ID=Gvermi12867.t2|Name=Gvermi12867.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=275bp
LAFEPCASSADCQGDRSCSQLAGSASGSVDLVDCGAGMCFCTSADGCAAT
DDCLDGETCASSTCLSNSFVPGAAVLDDADPALGLNLDPCQTISDCQNPR
NCVQYVDGVFGQCSGPNCFCIKLDPSCTSASQCSQGESCTKRESANNAIC
ISETAVIADSMDEQIDDIPDSGPALPPMVNVPAMQPPAAQPSASQPPSTQ
PPAMQPAATQPPATQPPASQPPATQPPATSTAAVDVSEQPQEAETTETAE
VVETPDSEQQTQPLLPPAVSTPGV*
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spliced messenger RNA

>Gvermi12867.t2 ID=Gvermi12867.t2|Name=Gvermi12867.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=825bp|location=Sequence derived from alignment at ScGOVlb_425:1846556..1847505+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCCTTCGAGCCGTGCGCCTCGTCGGCCGACTGCCAGGGCGACCGATC
GTGCTCGCAGCTTGCCGGCTCCGCGTCCGGCTCCGTCGATCTCGTCGACT
GCGGCGCCGGCATGTGCTTCTGCACCAGCGCCGACGGCTGCGCCGCCACG
GACGACTGCCTGGACGGCGAGACGTGCGCCAGCTCCACCTGCCTGTCCAA
CTCCTTCGTGCCCGGCGCCGCCGTGCTCGACGACGCCGACCCCGCGCTGG
GCCTCAACCTGGACCCGTGCCAGACCATCTCCGACTGCCAGAACCCGCGC
AACTGCGTGCAGTACGTGGACGGCGTGTTTGGCCAGTGCTCCGGCCCCAA
CTGCTTCTGCATCAAGTTGGACCCGAGCTGCACCTCCGCGTCGCAGTGCT
CGCAGGGTGAGTCGTGCACCAAGCGCGAGAGCGCCAACAACGCCATTTGC
ATCTCCGAGACCGCCGTCATCGCCGATTCCATGGATGAGCAGATCGATGA
CATTCCCGACTCGGGTCCTGCGCTGCCGCCCATGGTGAACGTGCCTGCAA
TGCAGCCCCCAGCCGCGCAGCCTTCTGCCTCGCAGCCGCCTTCCACGCAG
CCGCCTGCCATGCAGCCTGCCGCCACGCAGCCGCCCGCCACGCAGCCGCC
TGCCTCGCAGCCGCCTGCCACGCAGCCGCCTGCCACCTCCACCGCCGCCG
TCGACGTTTCGGAACAACCGCAGGAAGCAGAAACAACCGAAACGGCCGAA
GTGGTGGAAACGCCCGATAGCGAACAGCAAACGCAGCCGCTTCTGCCGCC
GGCTGTGTCCACGCCAGgcgtctga
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protein sequence of Gvermi12867.t2

>Gvermi12867.t2 ID=Gvermi12867.t2|Name=Gvermi12867.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=275bp
LAFEPCASSADCQGDRSCSQLAGSASGSVDLVDCGAGMCFCTSADGCAAT
DDCLDGETCASSTCLSNSFVPGAAVLDDADPALGLNLDPCQTISDCQNPR
NCVQYVDGVFGQCSGPNCFCIKLDPSCTSASQCSQGESCTKRESANNAIC
ISETAVIADSMDEQIDDIPDSGPALPPMVNVPAMQPPAAQPSASQPPSTQ
PPAMQPAATQPPATQPPASQPPATQPPATSTAAVDVSEQPQEAETTETAE
VVETPDSEQQTQPLLPPAVSTPGV*
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mRNA from alignment at ScGOVlb_425:1846556..1847505+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12867.t2 ID=Gvermi12867.t2|Name=Gvermi12867.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=950bp|location=Sequence derived from alignment at ScGOVlb_425:1846556..1847505+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGCCTTCGAGCCGTGCGCCTCGTCGGCCGACTGCCAGGGCGACCGATC
GTGCTCGCAGCTTGCCGGCTCCGCGTCCGGCTCCGTCGATCTCGTCGACT
GCGGCGCCGGCATGTGCTTCTGCACCAGCGCCGACGGCTGCGCCGCCACG
GACGACTGCCTGGACGGCGAGACGTGCGCCAGCTCCACCTGCCTGTCCAA
CTCCTTCGTGCCCGGCGCCGCCGTGCTCGACGACGCCGACCCCGCGCTGG
GCCTCAACCTGGACCCGTGCCAGACCATCTCCGACTGCCAGAACCCGCGC
AACTGCGTGCAGTACGTGGACGGCGTGTTTGGCCAGTGCTCCGGCCCCAA
CTGCTTCTGCATCAAGTTGGACCCGAGCTGCACCTCCGCGTCGCAGTGCT
CGCAGGGTGAGTCGTGCACCAAGCGCGAGAGCGCCAACAACGCCATTTGC
ATCTCCGAGACCGCCGTCATCGCCGATTCCATGGATGAGCAGATCGATGA
CATTCCCGACTCGGGTCCTGCGCTGCCGCCCATGGTGAACGTGCCTGCAA
TGCAGCCCCCAGCCGCGCAGCCTTCTGCCTCGCAGCCGCCTTCCACGCAG
CCGCCTGCCATGCAGCCTGCCGCCACGCAGCCGCCCGCCACGCAGCCGCC
TGCCTCGCAGCCGCCTGCCACGCAGCCGCCTGCCACCTCCACCGCCGCCG
TCGACGTTTCGGAACAACCGCAGGAAGCAGAAACAACCGAAACGGCCGAA
GTGGTGGAAACGCCCGATAGCGAACAGCAAACGCAGCCGCTTCTGCCGCC
GGCTGTGTCCACGCCAGGTGGCGACGAAACGTTGGAAACcatggcgccgg
aagccgaggcgcccacggacacgaccgacgacgacggcggggagcccgcc
acaacggatgaggccgagcaggaggcgtctgaagcggcgcaggcgtctga
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Coding sequence (CDS) from alignment at ScGOVlb_425:1846556..1847505+

>Gvermi12867.t2 ID=Gvermi12867.t2|Name=Gvermi12867.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=825bp|location=Sequence derived from alignment at ScGOVlb_425:1846556..1847505+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGCCTTCGAGCCGTGCGCCTCGTCGGCCGACTGCCAGGGCGACCGATC
GTGCTCGCAGCTTGCCGGCTCCGCGTCCGGCTCCGTCGATCTCGTCGACT
GCGGCGCCGGCATGTGCTTCTGCACCAGCGCCGACGGCTGCGCCGCCACG
GACGACTGCCTGGACGGCGAGACGTGCGCCAGCTCCACCTGCCTGTCCAA
CTCCTTCGTGCCCGGCGCCGCCGTGCTCGACGACGCCGACCCCGCGCTGG
GCCTCAACCTGGACCCGTGCCAGACCATCTCCGACTGCCAGAACCCGCGC
AACTGCGTGCAGTACGTGGACGGCGTGTTTGGCCAGTGCTCCGGCCCCAA
CTGCTTCTGCATCAAGTTGGACCCGAGCTGCACCTCCGCGTCGCAGTGCT
CGCAGGGTGAGTCGTGCACCAAGCGCGAGAGCGCCAACAACGCCATTTGC
ATCTCCGAGACCGCCGTCATCGCCGATTCCATGGATGAGCAGATCGATGA
CATTCCCGACTCGGGTCCTGCGCTGCCGCCCATGGTGAACGTGCCTGCAA
TGCAGCCCCCAGCCGCGCAGCCTTCTGCCTCGCAGCCGCCTTCCACGCAG
CCGCCTGCCATGCAGCCTGCCGCCACGCAGCCGCCCGCCACGCAGCCGCC
TGCCTCGCAGCCGCCTGCCACGCAGCCGCCTGCCACCTCCACCGCCGCCG
TCGACGTTTCGGAACAACCGCAGGAAGCAGAAACAACCGAAACGGCCGAA
GTGGTGGAAACGCCCGATAGCGAACAGCAAACGCAGCCGCTTCTGCCGCC
GGCTGTGTCCACGCCAGgcgtctga
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